View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18603_high_18 (Length: 235)
Name: NF18603_high_18
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18603_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 5178769 - 5178879
Alignment:
| Q |
18 |
catttgaagagctacgcctcctcgacttgtccaagaaccatattcaaggctggattgacaacgaaggtactactttggtccttatataagagttctttaa |
117 |
Q |
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||||||||||| |||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5178769 |
catttgaagagttacgtctcctcgacttgtccaagaacaatattcaaggttggattgacaacgaaggtactactttggtccttatataagagttctttaa |
5178868 |
T |
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| Q |
118 |
caaatttatac |
128 |
Q |
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| T |
5178869 |
caaatttatac |
5178879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 5141428 - 5141536
Alignment:
| Q |
20 |
tttgaagagctacgcctcctcgacttgtccaagaaccatattcaaggctggattgacaacgaaggtactactttggtccttatataagagttctttaaca |
119 |
Q |
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||||||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5141428 |
tttgaagagctacgcctcctcaacttatcctccaaccatattcaaggctggattggcaacgaaggtactactttggtccctatataagagttctttaaca |
5141527 |
T |
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| Q |
120 |
aatttatac |
128 |
Q |
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||||||||| |
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| T |
5141528 |
aatttatac |
5141536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 4846369 - 4846282
Alignment:
| Q |
18 |
catttgaagagctacgcctcctcgacttgtccaagaaccatattcaaggctggattgacaacgaaggtactactttggtccttatata |
105 |
Q |
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||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
4846369 |
catttaaagagctacgcctcctcgacttgtccgacaacgatattcaaggctggattggcaacgaaggtactatgttggtccttatata |
4846282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 5165589 - 5165676
Alignment:
| Q |
18 |
catttgaagagctacgcctcctcgacttgtccaagaaccatattcaaggctggattgacaacgaaggtactactttggtccttatata |
105 |
Q |
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|||||||||||||||||||||| ||||||||| | ||| ||||||| ||||||| ||| ||||||||||| |||| ||||||||| |
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| T |
5165589 |
catttgaagagctacgcctccttgacttgtcctataactcctttcaaggttggattggcaatgaaggtactacgttggcccttatata |
5165676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 5192909 - 5192996
Alignment:
| Q |
18 |
catttgaagagctacgcctcctcgacttgtccaagaaccatattcaaggctggattgacaacgaaggtactactttggtccttatata |
105 |
Q |
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||||| |||||||||| ||||||||||||||| | ||| ||| ||||||||||| ||||||||||||||| || ||||||||||| |
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| T |
5192909 |
catttaaagagctacggctcctcgacttgtcctacaactcctttctaggctggattggcaacgaaggtactacgttcgtccttatata |
5192996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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