View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18603_high_3 (Length: 485)

Name: NF18603_high_3
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18603_high_3
NF18603_high_3
[»] chr3 (1 HSPs)
chr3 (68-467)||(34601662-34602058)
[»] chr5 (1 HSPs)
chr5 (123-467)||(14261032-14261376)
[»] chr4 (2 HSPs)
chr4 (123-344)||(49425291-49425511)
chr4 (409-467)||(49425234-49425292)
[»] chr8 (1 HSPs)
chr8 (123-465)||(29101595-29101940)
[»] chr1 (1 HSPs)
chr1 (123-223)||(31889907-31890012)


Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 68 - 467
Target Start/End: Complemental strand, 34602058 - 34601662
Alignment:
Q  68 ggggctaacaaccctaatttgttcgaaacaaaataccattnnnnnnnntaaaatcaagcagtaagaacaacagcaccaccagcttccttgatcttcttct 167  Q
    |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34602058 ggggctaacaaccctaatttgttcgaaacaaaataccataaaaaaa---aaaatcaagcagtaagaacaacagcaccaccagcttccttgatcttcttct 34601962  T
Q  168 cagcaatcttcgaaatcagcttagtcttaacaacaaaaggctgattctgaggcaaaacaccttttccaagaagcttaaagaacccaaactgagtgacatc 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34601961 cagcaatcttcgaaatcagcttagtcttaacaacaaaaggctgattctgaggcaaaacaccttttccaagaagcttaaagaatccaaactgagtgacatc 34601862  T
Q  268 aatcacaggagctttattctccttcaaagctttctccttgacatcttgtggaatgagagaagcgatcttgtcgatgttgacaatagggttatagaatttg 367  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34601861 aatcataggagctttattctccttcaaagctttctccttcacatcttgtggaatgagagaagcgatcttgtcgatgttgacaatagggttatagaatttg 34601762  T
Q  368 ttacggagcttgtgaaagtaacgcataccaaccttaccgaagtaacctggatgatacttgtcgaagaggatacgatggtggtgcattcctccggcgttac 467  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34601761 ttacgaagcttgtgaaagtagcgcataccaaccttaccgaagtaacctggatgatacttgtcgaagaggatacgatggtggtgcattcctccggcgttac 34601662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 123 - 467
Target Start/End: Complemental strand, 14261376 - 14261032
Alignment:
Q  123 aagcagtaagaacaacagcaccaccagcttccttgatcttcttctcagcaatcttcgaaatcagcttagtcttaacaacaaaaggctgattctgaggcaa 222  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  14261376 aagcagtaagaacaacagcaccaccagcttccttaatcttcttctccgcaatcttcgaaatcagcttcgtcttcacaacaaaaggctgattctgcggcaa 14261277  T
Q  223 aacaccttttccaagaagcttaaagaacccaaactgagtgacatcaatcacaggagctttattctccttcaaagctttctccttgacatcttgtggaatg 322  Q
    ||||||||| || | ||||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| |||||||| |||||     
T  14261276 aacacctttccctaaaagcttaaaaaacccaaactgagtaacatcaatcaccggcgctttgttctccttcaaagctttctccttaacatcttgaggaatc 14261177  T
Q  323 agagaagcgatcttgtcgatgttgacaatagggttatagaatttgttacggagcttgtgaaagtaacgcataccaaccttaccgaagtaacctggatgat 422  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  14261176 aaagaagcgatcttgtcgatgttgacaatggggttatagaatttgttacggagcttgtgaaagtaacgcataccaactttaccgaagtaacctggatggt 14261077  T
Q  423 acttgtcgaagaggatacgatggtggtgcattcctccggcgttac 467  Q
    |||||||||||||||| |||||||| ||||| |||||||||||||    
T  14261076 acttgtcgaagaggatgcgatggtgatgcatacctccggcgttac 14261032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 123 - 344
Target Start/End: Complemental strand, 49425511 - 49425291
Alignment:
Q  123 aagcagtaagaacaacagcaccaccagcttccttgatcttcttctcagcaatcttcgaaatcagcttagtcttaacaacaaaaggctgattctgaggcaa 222  Q
    |||||| ||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49425511 aagcagcaagaacaccagcaccaacaacttccttgttcttcttctcagcaatcttcgaaatcagcttagtcttaacaacaaaaggttgattctgaggcaa 49425412  T
Q  223 aacaccttttccaagaagcttaaagaacccaaactgagtgacatcaatcacaggagctttattctccttcaaagctttctccttgacatcttgtggaatg 322  Q
    ||||  ||||||||||| ||||||| ||||||| | ||| ||||||||||||||| |||| ||||||||||||||||| ||||| ||||||| |||||||    
T  49425411 aacatattttccaagaa-cttaaagtacccaaattaagtaacatcaatcacaggacctttgttctccttcaaagctttttccttcacatcttttggaatg 49425313  T
Q  323 agagaagcgatcttgtcgatgt 344  Q
    ||||||||||||||||||||||    
T  49425312 agagaagcgatcttgtcgatgt 49425291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 409 - 467
Target Start/End: Complemental strand, 49425292 - 49425234
Alignment:
Q  409 gtaacctggatgatacttgtcgaagaggatacgatggtggtgcattcctccggcgttac 467  Q
    ||||||||||||||||||||||||||||||||| || |||| ||||||| || ||||||    
T  49425292 gtaacctggatgatacttgtcgaagaggatacggtgatggttcattccttcgtcgttac 49425234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 123 - 465
Target Start/End: Complemental strand, 29101940 - 29101595
Alignment:
Q  123 aagcagtaagaacaacagcaccaccagcttccttgatcttcttctcagcaatcttcgaaatcagcttagtcttaacaacaaaaggctgattctgaggcaa 222  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| | ||||||||||| |  ||||||||  |||||    
T  29101940 aagcagtaagaagaacagcaccaccagcttccttaatcttcttctccgcaatcttcgaaaccagcttcgccttaacaacaacactctgattcttcggcaa 29101841  T
Q  223 aacaccttttccaagaagcttaaagaacccaaactgagtgacatcaatcacaggag---ctttattctccttcaaagctttctccttgacatcttgtgga 319  Q
     || ||||| ||||| | |||||||||||||||||| || ||||||||||||||||   | |  |||  |||  ||||||| ||||| || ||||| ||     
T  29101840 cactcctttcccaagcaccttaaagaacccaaactgcgtaacatcaatcacaggagcaacatccttcgacttagaagctttgtccttcacttcttgaggt 29101741  T
Q  320 atgagagaagcgatcttgtcgatgttgacaatagggttatagaatttgttacggagcttgtgaaagtaacgcataccaaccttaccgaagtaacctggat 419  Q
    |  |||||   ||   | || ||||| ||  | ||  | | ||||||||| ||||| |||||||||||||||||||| || || ||||||||||| || |    
T  29101740 agaagagaccagagagtatcaatgttcacggtgggactgtggaatttgttgcggagtttgtgaaagtaacgcatacccactttgccgaagtaaccagggt 29101641  T
Q  420 gatacttgtcgaagaggatacgatggtggtgcattcctccggcgtt 465  Q
    ||||||||||||||||||| || || |||||||| |||||||||||    
T  29101640 gatacttgtcgaagaggatgcggtgatggtgcatacctccggcgtt 29101595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 31889907 - 31890012
Alignment:
Q  123 aagcagtaagaacaacagcaccaccagcttccttgatcttcttctc---agcaatcttcgaaatcagcttagtcttaac--aacaaaaggctgattctga 217  Q
    |||||| ||||||| || ||||| ||| |||||||||||||||||    ||||||||| |||||||||| |||||||||  || ||||||||||||||||    
T  31889907 aagcagcaagaacaccaacaccaacagtttccttgatcttcttcttcttagcaatctttgaaatcagctcagtcttaacaaaaaaaaaggctgattctga 31890006  T
Q  218 ggcaaa 223  Q
    ||||||    
T  31890007 ggcaaa 31890012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University