View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18603_high_5 (Length: 456)
Name: NF18603_high_5
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18603_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Original strand, 48500011 - 48500443
Alignment:
| Q |
17 |
atattatacatccagtacagaaaaagtccttataatatgttatatacatgataaataaaacatttatttcactaatgcagcaccaacggcttgcatacta |
116 |
Q |
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| T |
48500011 |
atattatacatccagtacagaaaaagtccttataatatgttatatacatgataaataaaacatttatttcactaatgcagcaccaacggcttgcatacta |
48500110 |
T |
|
| Q |
117 |
ctagctaagacctaaaccatagtatcatacactataacattaaccttgcctttctcgtcgcacagcttccttcaatataatccacaaactttccccctcc |
216 |
Q |
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| T |
48500111 |
ctagctaagacctaaaccatagtatcatacactataacattaaccttgcctttctcgtcgcacagcttccttcaatataatccacaaactttccccctcc |
48500210 |
T |
|
| Q |
217 |
ttttgtggttgattaaatttgaaaggaggtgtttcatataattattcacattcagggtaattttccatgaattagaggcaaatcaacttcatcacaccac |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48500211 |
ttttgtggttgatttaatttgaaaggaggtgtttcatataattattcacattcagggtaattttccatgaattagaggcaaatcaacttcatcacaccac |
48500310 |
T |
|
| Q |
317 |
tcaatacatctagtttcaaaatgactcccttttgcttggtccggcaagtaactaacccaaaattctccccctatcctccacttcaacacactcccttcca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48500311 |
tcaatacatctagtttcaaaatgactcccttttgcttggtccggcaagtaactaacccaaaattctccccctatcctccacttcaacacactcccttcca |
48500410 |
T |
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| Q |
417 |
tctctttacttaacctccaccctacttcttctc |
449 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
48500411 |
tctctttacttaacctccaccctacttcttctc |
48500443 |
T |
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