View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18603_low_1 (Length: 672)
Name: NF18603_low_1
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18603_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 605; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 18 - 666
Target Start/End: Complemental strand, 27447959 - 27447304
Alignment:
| Q |
18 |
tctcttaatctttatatgaaattaatttcttagcatcttagggtt------gagtaggtcaagtgggttaggtcaaaatgttaattaaactgaaagagtt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27447959 |
tctcttaatctttatatgaaattaatttcttagcatcttagggttagggttgagtaggtcaagtgggttaggtcaaaatgttaattaaattgaaagagtt |
27447860 |
T |
|
| Q |
112 |
tctgattcaaactctgttgaaggatacatagacatgacaactaattgatatttgttaatgacttaatgttattacaaaaaagttcctctacttctatatc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27447859 |
tctgattcaaactctgttgaaggatacatagacatgacaactaattgatatttgttaatgacttaatgttattacaaaaaagttcctctacttctatatc |
27447760 |
T |
|
| Q |
212 |
tcttctatgctatgggcctaaatgaatatatatttat-gtgatttgcaggaactattacaggtgcactcacaaaaatgatcaaggttgcaaagcaataaa |
310 |
Q |
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| T |
27447759 |
tcttctatgctataggcctaaatgaatatatatttattgtgatttgcaggaactattacagatgcactcacaaaaatgatcaaggttgcaaagcaataaa |
27447660 |
T |
|
| Q |
311 |
acaagtccagagaattcaagaggatccacctctttacaggacaacctattcaggccatcatacttgtagaatcttgcaaaaccctgagatcatagtagat |
410 |
Q |
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| T |
27447659 |
acaagtccaaagaattcaagaggatccacctcttcacaggacaacctattcaggccatcatacttgtagaatcttgcaaaaccctgagatcatagtagat |
27447560 |
T |
|
| Q |
411 |
tatcctactgatcactcttccatgtttcttagttttgacaactctttcccaacaccagccaaacaagactgtccttttctctcagtgaaaaaggaggagt |
510 |
Q |
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| T |
27447559 |
tatcctactgatcactcttccatgtttcttagttttgacaactctttcccaacaccagccaaacaagactgtccttttctctcagtgaaaaaggaggagt |
27447460 |
T |
|
| Q |
511 |
gcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggactcacttttgatgatccagaaaaggatgtcacactatcatcaacact |
610 |
Q |
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| T |
27447459 |
gcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggactcacttttgatgatccagaaaaggatgtcacactatcatcaacact |
27447360 |
T |
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| Q |
611 |
tgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtcc |
666 |
Q |
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| T |
27447359 |
tgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtcc |
27447304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 492 - 666
Target Start/End: Complemental strand, 27430201 - 27430027
Alignment:
| Q |
492 |
tcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggactcacttttgatgatccagaaaaggatg |
591 |
Q |
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| T |
27430201 |
tcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatg |
27430102 |
T |
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| Q |
592 |
tcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtcc |
666 |
Q |
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| T |
27430101 |
tcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
27430027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 253 - 494
Target Start/End: Complemental strand, 27430470 - 27430229
Alignment:
| Q |
253 |
tttgcaggaactattacaggtgcactcacaaaaatgatcaaggttgcaaagcaataaaacaagtccagagaattcaagaggatccacctctttacaggac |
352 |
Q |
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| T |
27430470 |
tttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatccacctctttacaaaac |
27430371 |
T |
|
| Q |
353 |
aacctattcaggccatcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaac |
452 |
Q |
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| T |
27430370 |
aacctactatgcccatcatacttgtagaatcttgcaaagctctgagatcataatggattctccttgtgaccagtcttccatgttccttagctttgacaac |
27430271 |
T |
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| Q |
453 |
tctttcccaacaccagccaaacaagactgtccttttctctca |
494 |
Q |
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| T |
27430270 |
tctttcccaacaccagccaaacaagattgcccttttctctca |
27430229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 332
Target Start/End: Original strand, 304006 - 304083
Alignment:
| Q |
255 |
tgcaggaactattacaggtgcactcacaaaaatgatcaaggttgcaaagcaataaaacaagtccagagaattcaagag |
332 |
Q |
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|||||| |||| |||||||| |||||||| | |||||| | |||||||||| ||||| || ||||||||||||||| |
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| T |
304006 |
tgcagggactactacaggtgtactcacaagatagatcaaagatgcaaagcaaccaaacaggtgcagagaattcaagag |
304083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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