View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18603_low_10 (Length: 409)
Name: NF18603_low_10
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18603_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 17392081 - 17391697
Alignment:
| Q |
7 |
tcgaagaatatgttaaacataaacaacgtttcgagcaaaggaagatcaacggaacagtgaaccatagagcctatacttatgctcgttgtcaaatttgtca |
106 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17392081 |
tcgaaaaaaatgttaaacacaaacaacgtttcgagcaaaggaagatcaacggaacagtgaaccatagagcctacacttatgctcgttgtcaaatttgtca |
17391982 |
T |
|
| Q |
107 |
aatacagacgcagaagtgttttacagcagaaaatggtaggtgccaatggaacatttaacaagtgtagatagagacgctccacgccacgtagttttgctgc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17391981 |
aatacagacgcagaagtgttttacagcagaaaatggtaggtgccaatggaacatttaacaagtgtagatagagacgctccatgccacgtagttttgctgc |
17391882 |
T |
|
| Q |
207 |
ttcaagccaattgtcgaaactcaaacagccatcagcctcttcctcccagagttcagaccaacacctaagagaaagagatttgagggtaaggcgttgagtg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| | |
|
|
| T |
17391881 |
ttcaagccaattgtcgaaactcaaacagccatcagcctcttcctcccagagttcagaccagcagctaagagaaagagatttgagggtaaggcgttgagcg |
17391782 |
T |
|
| Q |
307 |
agtggagacagcataactttgtccataagacgacggaagtaaatccagtcctcagaattgttgacaccttcatcattgatgttga |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17391781 |
agtggagacagcataactttgtccataagacgacggaagtaaatccagtcctcagaattgttgacaccttcatcattgatgttga |
17391697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 23 - 382
Target Start/End: Complemental strand, 17383258 - 17382929
Alignment:
| Q |
23 |
acataaacaacgtttcgagcaaaggaagatcaacggaacagtgaaccatagagcctatacttatgctcgttgtcaaatttgtcaaatacagacgcagaag |
122 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||| ||||| ||||| |||| ||| ||| |
|
|
| T |
17383258 |
acataatcaaggtttcgagcaaaggaagatcaacggaacagtgaagcatagagcctacacgtatcctcgt------------caaatgcagatgcataag |
17383171 |
T |
|
| Q |
123 |
tgttttacagcagaaaatggtaggtgccaatggaacatttaacaagtgtagatagagacgctccacgccacgtagttttgctgcttcaagccaattgtcg |
222 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |||||| |||| |||| ||||||||||||| ||||||||||||| ||| |
|
|
| T |
17383170 |
tgttttacagcagaaaatgctaggtgccaattgaacattgaacaagactagagtgagattctccacgccacgtcgttttgctgcttcgagc--------- |
17383080 |
T |
|
| Q |
223 |
aaactcaaacagccatcagcctcttcctcccagagttcagaccaacacctaagagaaagagatttgagggtaaggcgttgagtgagtggagacagcataa |
322 |
Q |
| |
|
||| |||||| ||| ||||||||||||| |||||||||||| ||| |||||||||||| |||| || ||||| ||||||||| ||||| |
|
|
| T |
17383079 |
---------cagtcatcaggctcatcctcccagagttgagaccaacacctgagatcaagagatttgagagtaatgctttgagcacgtggagacaacataa |
17382989 |
T |
|
| Q |
323 |
ctttgtccataagacgacggaagtaaatccagtcctcagaattgttgacaccttcatcat |
382 |
Q |
| |
|
|||||||||||| | ||| ||||||||| |||| | ||| |||||||| |||| ||||| |
|
|
| T |
17382988 |
ctttgtccataaatctacgaaagtaaatcaagtctttagagttgttgacgcctttatcat |
17382929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 236 - 374
Target Start/End: Complemental strand, 17376698 - 17376560
Alignment:
| Q |
236 |
catcagcctcttcctcccagagttcagaccaacacctaagagaaagagatttgagggtaaggcgttgagtgagtggagacagcataactttgtccataag |
335 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||||||||| ||| |||||||||||| ||||||| ||||| | | ||||||| ||||||||||||||||| |
|
|
| T |
17376698 |
catcaggctcatcctcccagagttgagaccaacacccgagatcaagagatttgagagtaaggctttgagcgcgcggagacaacataactttgtccataaa |
17376599 |
T |
|
| Q |
336 |
acgacggaagtaaatccagtcctcagaattgttgacacc |
374 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||| |
|
|
| T |
17376598 |
tcgacggaagtaaatccagtcttttgagttgttgacacc |
17376560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 17376875 - 17376815
Alignment:
| Q |
30 |
caacgtttcgagcaaaggaagatcaacggaacagtgaaccatagagcctatacttatgctc |
90 |
Q |
| |
|
||||| || ||| ||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
17376875 |
caacgatttgaggaaaggaagatcaacggaacagtgaagcatagagcctacacttatgctc |
17376815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 7 - 382
Target Start/End: Original strand, 26053778 - 26054147
Alignment:
| Q |
7 |
tcgaagaatatgttaaacataaacaacgtttcgagcaaaggaagatcaacggaacagtgaaccatagagcctatacttatgctcgttgtcaaatttgtca |
106 |
Q |
| |
|
||||| || |||| ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| ||||||| |
|
|
| T |
26053778 |
tcgaaaaaaatgtgaaacagaaataacgtttcgagcaaaggaagatcaacggaacagtgaagcatagagcctacacttatcctcgtcgtcaaatg----- |
26053872 |
T |
|
| Q |
107 |
aatacagacgcagaagtgttttacagcagaaaatggtaggtgccaatggaacatttaacaagtgtagatagagacgctccacgccacgtagttttgctgc |
206 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| ||| |
|
|
| T |
26053873 |
----cagatgcacaagtgttttacagcagaaaatggtaggtgccaatggaacatctaacaagtgtagatagagatcctccacgccacgtcgttttgttgc |
26053968 |
T |
|
| Q |
207 |
ttcaagccaattgtcgaaactcaaacagccatcagcctcttcctcccagagttcagaccaacacctaagagaaagagatttgagggtaaggcgttgagtg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26053969 |
ttcaagccaattgtcgaaactcaaacagctgtcagcctcgtcctcccagagttcagactgatacctaagagaaagagatttgagggtgaggcgttgagcc |
26054068 |
T |
|
| Q |
307 |
agtggaga-cagcataac--tttgtccataagacgacggaagtaaatccagtcctcagaattgttgacaccttcatcat |
382 |
Q |
| |
|
|||||| || |||||| ||||||||||| ||| ||| ||||||||||||| || | ||| ||||||||||||| |
|
|
| T |
26054069 |
catggagaccaacataacaatttgtccataaatcgaaagaattaaatccagtcctttgagtcgtttacaccttcatcat |
26054147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University