View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18603_low_11 (Length: 375)

Name: NF18603_low_11
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18603_low_11
NF18603_low_11
[»] chr4 (7 HSPs)
chr4 (71-357)||(50744205-50744500)
chr4 (1-59)||(621572-621630)
chr4 (1-59)||(620511-620569)
chr4 (4-59)||(49681304-49681359)
chr4 (3-59)||(27454957-27455013)
chr4 (5-59)||(31633652-31633706)
chr4 (2-59)||(23102318-23102375)
[»] chr3 (10 HSPs)
chr3 (1-59)||(1576527-1576585)
chr3 (1-59)||(1577547-1577604)
chr3 (1-59)||(47471512-47471570)
chr3 (1-59)||(54560853-54560911)
chr3 (1-59)||(54560074-54560132)
chr3 (1-59)||(50837501-50837558)
chr3 (1-59)||(50838295-50838353)
chr3 (3-49)||(43546417-43546463)
chr3 (1-59)||(50382776-50382834)
chr3 (25-70)||(42078694-42078739)
[»] chr8 (3 HSPs)
chr8 (1-59)||(14790713-14790771)
chr8 (1-59)||(14791490-14791548)
chr8 (1-51)||(20112312-20112362)
[»] chr6 (8 HSPs)
chr6 (1-59)||(15347473-15347531)
chr6 (1-59)||(30710315-30710372)
chr6 (1-59)||(6008682-6008740)
chr6 (1-59)||(17732852-17732910)
chr6 (1-51)||(15348233-15348283)
chr6 (1-59)||(17732056-17732114)
chr6 (1-49)||(6009464-6009512)
chr6 (3-59)||(30709532-30709588)
[»] chr5 (4 HSPs)
chr5 (1-59)||(5347764-5347822)
chr5 (1-59)||(5348542-5348600)
chr5 (3-59)||(36429323-36429379)
chr5 (1-50)||(31808327-31808376)
[»] scaffold0102 (1 HSPs)
scaffold0102 (1-58)||(33180-33238)
[»] chr2 (5 HSPs)
chr2 (1-59)||(4592668-4592726)
chr2 (1-59)||(10256526-10256583)
chr2 (3-57)||(4593442-4593496)
chr2 (1-59)||(45114929-45114987)
chr2 (1-58)||(33002919-33002975)
[»] chr1 (5 HSPs)
chr1 (1-59)||(47445029-47445087)
chr1 (1-58)||(47445811-47445868)
chr1 (1-45)||(27585345-27585388)
chr1 (1-58)||(786778-786835)
chr1 (1-42)||(26991053-26991094)
[»] chr7 (2 HSPs)
chr7 (1-59)||(36068143-36068201)
chr7 (1-57)||(32390927-32390982)
[»] scaffold0169 (1 HSPs)
scaffold0169 (1-43)||(26741-26783)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 71 - 357
Target Start/End: Original strand, 50744205 - 50744500
Alignment:
Q  71 ttcatataatgggttaggcactgaaaaccgaagcccaattacgttgctttctccaaccgagtc---------actcactccgacgaaaagccctccacca 161  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  50744205 ttcatataatgggttgggcactgaaaaccgaagcccaattacgttgctttctccaaccgagtcgagtcactcactcactccgacgaaaagccctccacca 50744304  T
Q  162 cagccgcaacatttaacatcgaagttattccggcgagtcaatttcataatctcctttacctcttgtccaaactagttctcatcgtctttctcttcttctc 261  Q
    |  ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50744305 ccaccgaaacatttaacatcgaagtgattccggcgagtcaatttcataatctcctttacctcttgtccagactagttctcatcgtctttctcttcttctc 50744404  T
Q  262 aaatcataatttccttacctcttgccccatcaacaacttgcccttttagaccttggaagtaacaattcacttcgacacaagcttcgaccacgggta 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50744405 aaatcataatttccttacctcttgccccatcaacaacttgcccttttagaccttggaagtaacaattcacttcgacacaagcttcaaccacgggta 50744500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 621572 - 621630
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  621572 taacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcaggggggtttttg 621630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 620569 - 620511
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  620569 taacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcagggggatttttg 620511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 49681359 - 49681304
Alignment:
Q  4 cgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||||||||||||||| | |||||||||||||| |||||||||||||| |||||||    
T  49681359 cgtttgacaatttcagaggggtttttgaagttttctaaaaatcaggggagtttttg 49681304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 27455013 - 27454957
Alignment:
Q  3 acgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||||||| |||||||  | ||||||| ||||||| |||||||||||||||||||||    
T  27455013 acgtttgataatttcaaaggggtttttcaagtttcttaaaaatcaggggggtttttg 27454957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 31633652 - 31633706
Alignment:
Q  5 gtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||||||||||| | || ||||||||||||||| ||||||| | |||||||||||    
T  31633652 gtttgacaattttatgggggtttttgaagtttcttaaaaattaagggggtttttg 31633706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 23102318 - 23102375
Alignment:
Q  2 aacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||| ||||||||||||||| ||| ||||||||||   |||| |||||||||||||||    
T  23102318 aacgcttgacaatttcaggggggtatttgaagttttgcaaaattcaggggggtttttg 23102375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 1576585 - 1576527
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1576585 taacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcaggggggtttttg 1576527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 1577547 - 1577604
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1577547 taacgtttgtcaatttcaggg-ggtttttgaagtttcctaaaaatcaggggggtttttg 1577604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 47471512 - 47471570
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  47471512 taacgtttggcaatttcaggggggtttttgaagtttcctaaaaatcagggggggttttg 47471570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 54560853 - 54560911
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
T  54560853 taacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggtttttg 54560911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 54560132 - 54560074
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||||||||| ||||||| || ||||||||||||||| |||||||||||||||||||||    
T  54560132 taacgtttgataatttcatgggggtttttgaagtttcttaaaaatcaggggggtttttg 54560074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 50837558 - 50837501
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    ||||||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||    
T  50837558 taacgtttgtcaatttcaggg-ggtttttgaaattttctaaaaatcaggggggtttttg 50837501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 50838295 - 50838353
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||||||||| ||||||||||  |||||||||||||| ||||||| |||||||||||||    
T  50838295 taacgtttgataatttcaggggagtttttgaagtttcttaaaaattaggggggtttttg 50838353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 43546463 - 43546417
Alignment:
Q  3 acgtttgacaatttcagggaggtttttgaagtttcctaaaaatcagg 49  Q
    |||||||| |||||||| | ||||||||||||||| |||||||||||    
T  43546463 acgtttgataatttcagaggggtttttgaagtttcttaaaaatcagg 43546417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 50382776 - 50382834
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    ||||||||||| |||||| || ||| ||||||||||| ||||| ||||||| |||||||    
T  50382776 taacgtttgaccatttcatgggggtgtttgaagtttcttaaaagtcaggggagtttttg 50382834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 42078694 - 42078739
Alignment:
Q  25 tttttgaagtttcctaaaaatcaggggggtttttgcctatttactc 70  Q
    ||||||||||||| ||||||| |||| |||||||||||||| ||||    
T  42078694 tttttgaagtttcttaaaaattagggtggtttttgcctattcactc 42078739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 14790771 - 14790713
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  14790771 taacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttttg 14790713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 14791490 - 14791548
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
T  14791490 taacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggtttttg 14791548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20112312 - 20112362
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcagggg 51  Q
    |||||||||| |||||||| | ||||||||||||||| |||||||||||||    
T  20112312 taacgtttgataatttcagtggggtttttgaagtttcttaaaaatcagggg 20112362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 15347531 - 15347473
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  15347531 taacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttttg 15347473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30710315 - 30710372
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30710315 taacgtttggcaatttcaggg-ggtttttgaagtttcctaaaaatcaggggggtttttg 30710372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6008740 - 6008682
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  6008740 taacgtttgtcaatttcagggggctttttgaagtttcctaaaaatcagggaggtttttg 6008682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17732852 - 17732910
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||||||||| |||||||||| ||||||||||||||| |||||||||||||| ||||||    
T  17732852 taacgtttgataatttcaggggggtttttgaagtttcttaaaaatcagggggttttttg 17732910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15348233 - 15348283
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcagggg 51  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  15348233 taacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcagggg 15348283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17732114 - 17732056
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    ||||||||| ||||||||||| | |||||||| ||| ||||||||||||||| ||||||    
T  17732114 taacgtttgtcaatttcagggggttttttgaaattttctaaaaatcagggggatttttg 17732056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6009464 - 6009512
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcagg 49  Q
    |||||||||| ||||||||||  |||||||||||||| |||||||||||    
T  6009464 taacgtttgataatttcaggggagtttttgaagtttcttaaaaatcagg 6009512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 30709588 - 30709532
Alignment:
Q  3 acgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||||||| |||||||| |  |||||||||||||| |||||||||||||| ||||||    
T  30709588 acgtttgataatttcagaggcgtttttgaagtttcttaaaaatcagggggatttttg 30709532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5347822 - 5347764
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  5347822 taacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttttg 5347764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5348542 - 5348600
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
T  5348542 taacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggtttttg 5348600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 36429379 - 36429323
Alignment:
Q  3 acgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||||||| ||||||||||  |||||||||||||| |||||||||||||| ||||||    
T  36429379 acgtttgataatttcaggggcgtttttgaagtttcttaaaaatcagggggatttttg 36429323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31808376 - 31808327
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggg 50  Q
    |||||||| |||||||||||   |||||||||||||| ||||||||||||    
T  31808376 taacgtttaacaatttcaggagagtttttgaagtttcttaaaaatcaggg 31808327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33180 - 33238
Alignment:
Q  1 taacgtttgacaatttcagggaggttttt-gaagtttcctaaaaatcaggggggttttt 58  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  33180 taacgtttgacaatttcaggggggtttttggaagtttcctaaaaatcaggggagttttt 33238  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 4592726 - 4592668
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||||||||| ||||||| || ||||||||||||||| |||||||||||||||||||||    
T  4592726 taacgtttgataatttcatgggggtttttgaagtttcttaaaaatcaggggggtttttg 4592668  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10256526 - 10256583
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  10256526 taacgtttggcaatttcaggg-ggtttttgaagtttcctagaaatcaggggggtttttg 10256583  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 4593442 - 4593496
Alignment:
Q  3 acgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttt 57  Q
    ||||||| ||||||||||| | |||||||||||||||||||||||||||| ||||    
T  4593442 acgtttgtcaatttcagggggttttttgaagtttcctaaaaatcagggggttttt 4593496  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 45114929 - 45114987
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||||||||||||||||| |  || |||||||||||| ||||| ||| |||||||||||    
T  45114929 taacgtttgacaatttcatgaggggttttgaagtttcttaaaagtcaagggggtttttg 45114987  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 33002975 - 33002919
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggttttt 58  Q
    ||||||||||||||||||  ||| ||||||||||||| ||||||||| |||| |||||    
T  33002975 taacgtttgacaatttcatcgag-tttttgaagtttcttaaaaatcaaggggtttttt 33002919  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 47445087 - 47445029
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||    
T  47445087 taacgtttgacaatttcatgggggtttttgaagtttcctgaaaatcagggggggttttg 47445029  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 47445811 - 47445868
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggttttt 58  Q
    |||||||||| ||||||||||   ||||||||||||| ||||||||||||||| ||||    
T  47445811 taacgtttgataatttcaggggtttttttgaagtttcttaaaaatcaggggggatttt 47445868  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27585388 - 27585345
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaat 45  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||    
T  27585388 taacgtttgacaatttcaggg-ggtttttgaagtttcttaaaaat 27585345  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 786835 - 786778
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggttttt 58  Q
    |||||||||| ||||| | || | ||||||||||||| |||||||||||||| |||||    
T  786835 taacgtttgataattttatggggttttttgaagtttcttaaaaatcagggggattttt 786778  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26991053 - 26991094
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaa 42  Q
    |||||||||||||||| ||||| |||||||||||||| ||||    
T  26991053 taacgtttgacaattttagggaagtttttgaagtttcttaaa 26991094  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 36068143 - 36068201
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttttg 59  Q
    |||| |||||||||||||||| | |||||||| ||||||||||||||||||| ||||||    
T  36068143 taacatttgacaatttcagggggttttttgaaatttcctaaaaatcagggggttttttg 36068201  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32390927 - 32390982
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaaatcaggggggtttt 57  Q
    |||||||||| |||||||||| | ||||||||||||| ||||  |||||||||||||    
T  32390927 taacgtttgataatttcaggg-gatttttgaagtttcttaaatgtcaggggggtttt 32390982  T

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Target: scaffold0169 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26783 - 26741
Alignment:
Q  1 taacgtttgacaatttcagggaggtttttgaagtttcctaaaa 43  Q
    |||||||||||||||||||| || ||||||||||||| |||||    
T  26783 taacgtttgacaatttcaggaagatttttgaagtttcttaaaa 26741  T

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