View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18603_low_14 (Length: 347)
Name: NF18603_low_14
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18603_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 42768787 - 42768462
Alignment:
| Q |
17 |
atcagggaatgatgttctttctgatcctcatgtgcttcctgcttcacaccttggctatgatgatggaagctacatttttagttacctcaacaacaccaag |
116 |
Q |
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| T |
42768787 |
atcagggaatgatgttctttctgatcctcatgtgcttcctgcttcacaccttggctatgatgatggaagctacatttttagttacctcaacaacaccaag |
42768688 |
T |
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| Q |
117 |
taaannnnnnnn------------attaatatgcttcttcatagttcatatatacagaataaaatttggataagattcctacagaacaatttattttata |
204 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42768687 |
taattttttattttttatttttttattaatatgcttcttcatagttcatatatacagaataaaatttggataagattcctacagaacaatttattttata |
42768588 |
T |
|
| Q |
205 |
tgctatacatatatgatgcaggtctcctaaggcttcaatttctaaagtggaaacaaaattagggcaaagtccatctccaattatggcttcattttcatca |
304 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42768587 |
tgttatacatatatgatgcaggtctcctaaggcttcaatttctaaagtggaaacaaaattagggcaaagtccatctccaattatggcttcattttcatca |
42768488 |
T |
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| Q |
305 |
agaggacctaatatcattgacccatc |
330 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42768487 |
agaggacctaatatcattgacccatc |
42768462 |
T |
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