View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18603_low_16 (Length: 331)
Name: NF18603_low_16
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18603_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 5 - 317
Target Start/End: Complemental strand, 49180703 - 49180391
Alignment:
| Q |
5 |
aggggcatagcaaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgcttacaatccagacaaaagtttctttccaaaaaacacagatt |
104 |
Q |
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| T |
49180703 |
aggggcatagcaaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgcttacaatccagacaaaagtttctttcagaaaaacacagatt |
49180604 |
T |
|
| Q |
105 |
gatccatgcttgcacaggcgtatctcacaaaactcaccannnnnnngcaaggattgggcatatcattttatctataataacatgtgaggaaccatgaata |
204 |
Q |
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| T |
49180603 |
gatccatgcttgcacaggcgtatctcacaaaactcaccattttttcgcaaggattgggcatatcattttatctgtaataacatgtgaggaaccatgaata |
49180504 |
T |
|
| Q |
205 |
gtatgcatagtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacctgacttccagccctgtagcagcaaactcatcttatacgtggcata |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49180503 |
gtatgcatagtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacctgacttccagccctgtagcagcaaactcatcttatacgtggcata |
49180404 |
T |
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| Q |
305 |
tagccatttttgt |
317 |
Q |
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||||||||||||| |
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| T |
49180403 |
tagccatttttgt |
49180391 |
T |
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