View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18603_low_17 (Length: 301)

Name: NF18603_low_17
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18603_low_17
NF18603_low_17
[»] chr6 (13 HSPs)
chr6 (68-293)||(17732246-17732469)
chr6 (68-293)||(30709965-30710188)
chr6 (1-293)||(6008800-6009088)
chr6 (90-293)||(15347897-15348098)
chr6 (1-48)||(17732179-17732227)
chr6 (1-48)||(30710206-30710254)
chr6 (1-48)||(15348124-15348172)
chr6 (68-107)||(17732681-17732720)
chr6 (68-105)||(6009295-6009332)
chr6 (1-45)||(30709652-30709697)
chr6 (1-33)||(6009368-6009400)
chr6 (1-33)||(15347596-15347628)
chr6 (1-33)||(17732756-17732788)
[»] scaffold0102 (4 HSPs)
scaffold0102 (68-293)||(32824-33047)
scaffold0102 (68-107)||(32583-32622)
scaffold0102 (1-45)||(32515-32560)
scaffold0102 (5-48)||(33067-33111)
[»] chr8 (7 HSPs)
chr8 (68-293)||(14791142-14791362)
chr8 (68-293)||(20111722-20111939)
chr8 (1-48)||(20111656-20111704)
chr8 (1-48)||(14791382-14791430)
chr8 (68-107)||(20112140-20112179)
chr8 (1-45)||(20112203-20112248)
chr8 (1-33)||(14790836-14790868)
[»] chr4 (17 HSPs)
chr4 (68-293)||(27455392-27455615)
chr4 (68-274)||(49681488-49681691)
chr4 (1-48)||(27455632-27455680)
chr4 (1-48)||(49681421-49681469)
chr4 (1-48)||(621459-621507)
chr4 (68-104)||(21224481-21224517)
chr4 (68-107)||(27455149-27455188)
chr4 (68-101)||(21225014-21225047)
chr4 (68-101)||(21226405-21226438)
chr4 (68-105)||(49681900-49681937)
chr4 (1-33)||(21225963-21225995)
chr4 (1-33)||(21226475-21226507)
chr4 (1-33)||(27455080-27455112)
chr4 (1-33)||(49681973-49682005)
chr4 (68-102)||(21226032-21226066)
chr4 (6-35)||(21225081-21225110)
chr4 (1-33)||(21224410-21224442)
[»] chr3 (16 HSPs)
chr3 (68-293)||(47471165-47471385)
chr3 (68-293)||(50837688-50837912)
chr3 (1-293)||(54560498-54560786)
chr3 (1-48)||(47471403-47471451)
chr3 (1-48)||(50837622-50837670)
chr3 (1-48)||(1576649-1576697)
chr3 (68-107)||(47470925-47470964)
chr3 (1-45)||(35942265-35942310)
chr3 (1-45)||(35942718-35942763)
chr3 (1-45)||(43546528-43546573)
chr3 (1-45)||(47470857-47470902)
chr3 (70-107)||(50838122-50838159)
chr3 (68-104)||(35942660-35942696)
chr3 (1-33)||(50838199-50838231)
chr3 (68-104)||(35942333-35942369)
chr3 (1-33)||(54560197-54560229)
[»] chr7 (7 HSPs)
chr7 (68-286)||(36067794-36068010)
chr7 (1-48)||(36068029-36068077)
chr7 (68-107)||(3987104-3987143)
chr7 (1-45)||(3987169-3987214)
chr7 (68-100)||(30480579-30480611)
chr7 (1-45)||(36067457-36067502)
chr7 (68-101)||(36067525-36067558)
[»] chr5 (19 HSPs)
chr5 (68-293)||(5348188-5348408)
chr5 (68-293)||(36429754-36429974)
chr5 (146-293)||(26380164-26380321)
chr5 (1-48)||(5348427-5348475)
chr5 (1-48)||(36429993-36430041)
chr5 (68-101)||(29500239-29500272)
chr5 (1-45)||(29500643-29500688)
chr5 (1-45)||(31808441-31808486)
chr5 (1-45)||(36429445-36429490)
chr5 (1-45)||(36681775-36681820)
chr5 (1-33)||(5347887-5347919)
chr5 (68-104)||(7491478-7491514)
chr5 (68-104)||(29500584-29500620)
chr5 (68-104)||(31808509-31808545)
chr5 (68-100)||(36429513-36429545)
chr5 (73-106)||(933835-933868)
chr5 (1-45)||(7491411-7491456)
chr5 (68-97)||(36681722-36681751)
chr5 (68-104)||(14278564-14278600)
[»] chr2 (11 HSPs)
chr2 (68-293)||(4593084-4593304)
chr2 (68-293)||(10256169-10256392)
chr2 (1-48)||(10256411-10256459)
chr2 (1-48)||(4593324-4593372)
chr2 (68-104)||(33003114-33003150)
chr2 (68-107)||(10255900-10255939)
chr2 (1-45)||(10255832-10255877)
chr2 (1-33)||(4592791-4592823)
chr2 (1-33)||(22539055-22539087)
chr2 (68-107)||(33003594-33003633)
chr2 (1-30)||(33003671-33003700)
[»] chr1 (12 HSPs)
chr1 (68-293)||(47445212-47445435)
chr1 (68-107)||(36475511-36475550)
chr1 (3-48)||(47445147-47445193)
chr1 (68-104)||(27585864-27585900)
chr1 (68-104)||(36475842-36475878)
chr1 (1-45)||(36475444-36475489)
chr1 (68-105)||(47445642-47445679)
chr1 (1-45)||(47445702-47445747)
chr1 (1-33)||(27585462-27585494)
chr1 (68-104)||(27585529-27585565)
chr1 (1-45)||(27585924-27585969)
chr1 (1-45)||(36475901-36475946)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 68 - 293
Target Start/End: Original strand, 17732246 - 17732469
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    |||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17732246 ttaagaaacaacaaccattaacaacatcatcatcatc---tcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaa 17732342  T
Q  168 agatcaagaga-aattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgat 266  Q
    ||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17732343 agatcaagagacaattgatgatgatgatcagtgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgat 17732442  T
Q  267 tctgaagaggagacatgagtgatgatg 293  Q
    |||||||||||||||||||||||||||    
T  17732443 tctgaagaggagacatgagtgatgatg 17732469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 30710188 - 30709965
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    |||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30710188 ttaagaaacaacaaccattaacaacatcatcatcatc---tcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaa 30710092  T
Q  168 agatcaagaga-aattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgat 266  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  30710091 agatcaagagacaattgatgatgatgatcattgttgttggtaatctcatcgctgctccaaaaaagaaatccatttgaatgagggttaaaaagtgattgat 30709992  T
Q  267 tctgaagaggagacatgagtgatgatg 293  Q
    |||||||||||||||||||||||||||    
T  30709991 tctgaagaggagacatgagtgatgatg 30709965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 6008800 - 6009088
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttatnnnnnnnnnnnnnnnnnnnttaagaaacaacaaccattaacaacatcatca 99  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||                   |||||||||||||||||||||||      |||    
T  6008800 tcttcatcttcttccttccacttttttcatcatcttcatgaatatttataaaaaatccagaaaaaaaattaagaaacaacaaccattaaca------tca 6008893  T
Q  100 tcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagaga-aattgatgatgatgatcatt 198  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6008894 tcatcatctcattactagcttctcttgtttgttgctcattattgttatccaaaagggtcgtagcagaaagatcaagagacaattgatgatgatgatcatt 6008993  T
Q  199 gttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 293  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6008994 gttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttcaaaagtgattgattctgaagaggagacatgagtgatgatg 6009088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 90 - 293
Target Start/End: Complemental strand, 15348098 - 15347897
Alignment:
Q  90 aacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagagaaattgatgatg 189  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |  |||||    
T  15348098 aacaacatcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaagatcaagagacaat--tgatg 15348001  T
Q  190 atgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgat 289  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15348000 atgatcattgttgttgataatctcatcgctgctccaaaatggaaatccatttgaatgagggttaaaaagtgattgattctaaagaggagacatgagtgat 15347901  T
Q  290 gatg 293  Q
    ||||    
T  15347900 gatg 15347897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17732179 - 17732227
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatca-tttcatgaatatttat 48  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17732179 tcttcatcttcttccttccacttttttcatcattttcatgaatatttat 17732227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30710254 - 30710206
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30710254 tcttcatcttcttccttccacttttttcatcatcttcatgaatatttat 30710206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15348172 - 15348124
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  15348172 tcttcatcttcttccttgcacttttttcatcatcttcatgaatatttat 15348124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 17732720 - 17732681
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatc 107  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  17732720 ttaagaaacaacaaccattaacaacaacatcatcatcatc 17732681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 6009332 - 6009295
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatca 105  Q
    |||||||||||||||||||||||||| |||||||||||    
T  6009332 ttaagaaacaacaaccattaacaacaacatcatcatca 6009295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30709652 - 30709697
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  30709652 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 30709697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6009400 - 6009368
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    |||||||||||||||||||||||||||||||||    
T  6009400 tcttcatcttcttccttccacttttttcatcat 6009368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 15347596 - 15347628
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    ||||||||||||||||| |||||||||||||||    
T  15347596 tcttcatcttcttcctttcacttttttcatcat 15347628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17732788 - 17732756
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    |||||||||||||||||| ||||||||||||||    
T  17732788 tcttcatcttcttccttcgacttttttcatcat 17732756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 33047 - 32824
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    |||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33047 ttaagaaacaacaaccattaacaacatcatcatcatc---tcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaa 32951  T
Q  168 agatcaagaga-aattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgat 266  Q
    ||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32950 agatcaagagacaattgatgatgatgatcattgttgttggtaatctcatcactgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgat 32851  T
Q  267 tctgaagaggagacatgagtgatgatg 293  Q
    |||||| ||||||||||||||||||||    
T  32850 tctgaaaaggagacatgagtgatgatg 32824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 32583 - 32622
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatc 107  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  32583 ttaagaaacaacaaccattaacaacatcatcatcaacatc 32622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32515 - 32560
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  32515 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 32560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 33111 - 33067
Alignment:
Q  5 catcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  33111 catcttcttccttccactttttttatcatcttcatgaatatttat 33067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 14791362 - 14791142
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    |||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14791362 ttaagaaacaacaaccattaacaacatcatcatcatc---tcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaa 14791266  T
Q  168 agatcaagagaaattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgatt 267  Q
    ||||||||||| | |  ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14791265 agatcaagagacaat--tgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgatt 14791168  T
Q  268 ctgaagaggagacatgagtgatgatg 293  Q
    ||||||||||||||||||||||||||    
T  14791167 ctgaagaggagacatgagtgatgatg 14791142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 68 - 293
Target Start/End: Original strand, 20111722 - 20111939
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    ||||||||||||||| ||||||||||||||||||      || |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  20111722 ttaagaaacaacaacgattaacaacatcatcatc------tcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtggcagaa 20111815  T
Q  168 agatcaagagaaattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgatt 267  Q
    ||||||||||| | |  ||||||||||||||||||||| | |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  20111816 agatcaagagacaat--tgatgatgatcattgttgttggtaatctcatcgctgctccaaaaagaaaatccatttgaatgagggttaaaaagtgattgatt 20111913  T
Q  268 ctgaagaggagacatgagtgatgatg 293  Q
     |||||| ||||||||||||||||||    
T  20111914 ttgaagatgagacatgagtgatgatg 20111939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20111656 - 20111704
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20111656 tcttcatcttcttccttccacttttttcatcatcttcatgaatatttat 20111704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14791430 - 14791382
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  14791430 tcttcatcttcttccttgcacttttttcatcatcttcatgaatatttat 14791382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 20112179 - 20112140
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatc 107  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  20112179 ttaagaaacaacaaccattaacaacatcatcatcaacatc 20112140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20112248 - 20112203
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  20112248 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 20112203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 14790836 - 14790868
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    |||||||||||||||||||||||||||||||||    
T  14790836 tcttcatcttcttccttccacttttttcatcat 14790868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 27455615 - 27455392
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    |||||||||||||||||||||||||||||||||||||   || |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27455615 ttaagaaacaacaaccattaacaacatcatcatcatc---tcattactaacttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaa 27455519  T
Q  168 agatcaagaga-aattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgat 266  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  27455518 agatcaagagacaattgatgatgatgatcattgttgttggtaatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgatttat 27455419  T
Q  267 tctgaagaggagacatgagtgatgatg 293  Q
    |||||||||||||||||||||||||||    
T  27455418 tctgaagaggagacatgagtgatgatg 27455392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 68 - 274
Target Start/End: Original strand, 49681488 - 49681691
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    |||||||||||||||||||||||||||||| ||||||   || ||||||||||||||||||||||  |||||||||||||||||||||||||||||  ||    
T  49681488 ttaagaaacaacaaccattaacaacatcattatcatc---tcattactagcttctcttgtttgttgatcattgttgttatccaaaagggtcgtagct-aa 49681583  T
Q  168 agatcaagaga-aattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgat 266  Q
    ||||  ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  49681584 agatatagagacaattgatgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaacccatttgaatgagggttaaaaagtgattgat 49681683  T
Q  267 tctgaaga 274  Q
    ||| ||||    
T  49681684 tctaaaga 49681691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27455680 - 27455632
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27455680 tcttcatcttcttccttccacttttttcatcatcttcatgaatatttat 27455632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 49681421 - 49681469
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49681421 tcttcatcttcttccttccacttttttcatcatcttcatgaatatttat 49681469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 621507 - 621459
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  621507 tcttcatcttcttccttgcacttttttcatcatcttcatgaatatttat 621459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 21224481 - 21224517
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatc 104  Q
    |||||||||||||||||||||||||||||||||||||    
T  21224481 ttaagaaacaacaaccattaacaacatcatcatcatc 21224517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 27455149 - 27455188
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatc 107  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  27455149 ttaagaaacaacaaccattaacaacatcatcatcaacatc 27455188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 101
Target Start/End: Complemental strand, 21225047 - 21225014
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatc 101  Q
    ||||||||||||||||||||||||||||||||||    
T  21225047 ttaagaaacaacaaccattaacaacatcatcatc 21225014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 101
Target Start/End: Complemental strand, 21226438 - 21226405
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatc 101  Q
    ||||||||||||||||||||||||||||||||||    
T  21226438 ttaagaaacaacaaccattaacaacatcatcatc 21226405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 49681937 - 49681900
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatca 105  Q
    |||||||||||||||||||||||||| |||||||||||    
T  49681937 ttaagaaacaacaaccattaacaacaacatcatcatca 49681900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 21225963 - 21225995
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    |||||||||||||||||||||||||||||||||    
T  21225963 tcttcatcttcttccttccacttttttcatcat 21225995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 21226507 - 21226475
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    |||||||||||||||||||||||||||||||||    
T  21226507 tcttcatcttcttccttccacttttttcatcat 21226475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27455080 - 27455112
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    |||||||||||||||||||||||||||||||||    
T  27455080 tcttcatcttcttccttccacttttttcatcat 27455112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 49682005 - 49681973
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    |||||||||||||||||||||||||||||||||    
T  49682005 tcttcatcttcttccttccacttttttcatcat 49681973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 21226032 - 21226066
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatca 102  Q
    ||||||||||||||||||||| |||||||||||||    
T  21226032 ttaagaaacaacaaccattaaaaacatcatcatca 21226066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 21225110 - 21225081
Alignment:
Q  6 atcttcttccttccacttttttcatcattt 35  Q
    ||||||||||||||||||||||||||||||    
T  21225110 atcttcttccttccacttttttcatcattt 21225081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 21224410 - 21224442
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    ||||||| |||||||||||||||||||||||||    
T  21224410 tcttcatattcttccttccacttttttcatcat 21224442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 47471385 - 47471165
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    |||||||||||||||||||||||      ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47471385 ttaagaaacaacaaccattaaca------tcatcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaa 47471292  T
Q  168 agatcaagaga-aattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgat 266  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47471291 agatcaagagacaattgatgatgatgatcattgttgttggtaatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgat 47471192  T
Q  267 tctgaagaggagacatgagtgatgatg 293  Q
    |||||||||||||||||||||||||||    
T  47471191 tctgaagaggagacatgagtgatgatg 47471165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 68 - 293
Target Start/End: Original strand, 50837688 - 50837912
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    ||||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50837688 ttaagaaacaacaaccattaacaacatc---atcatcatctcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaa 50837784  T
Q  168 agatcaagaga-aattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatga-gggttaaaaagtgattga 265  Q
    ||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  50837785 agatcaagagacaattgatgatgatgatcagtgttgttgataatttcatcgctgctccaaaaaggaaatccatttgaatgaggggttaaaaagtgattga 50837884  T
Q  266 ttctgaagaggagacatgagtgatgatg 293  Q
    ||||||||||||||||||||||||||||    
T  50837885 ttctgaagaggagacatgagtgatgatg 50837912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 54560786 - 54560498
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttatnnnnnnnnnnnnnnnnnnnttaagaaacaacaaccattaacaacatcatca 99  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||                   ||||||||||||||||||||||||||||||||    
T  54560786 tcttcatcttcttccttccacttttttcatcatcttcatgaatatttataaaaaaatccagaaaaaaattaagaaacaacaaccattaacaacatcatca 54560687  T
Q  100 tcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaaagatcaagagaaattgatgatgatgatcattg 199  Q
    |||||   || |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |  |||||||||||||||    
T  54560686 tcatc---tcattacaagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaaagatcaagagacaat--tgatgatgatcattg 54560592  T
Q  200 ttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 293  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  54560591 ttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgattatgaagaggagacatgagtgatgatg 54560498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 47471451 - 47471403
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47471451 tcttcatcttcttccttccacttttttcatcatcttcatgaatatttat 47471403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 50837622 - 50837670
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatca-tttcatgaatatttat 48  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50837622 tcttcatcttcttccttccacttttttcatcattttcatgaatatttat 50837670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1576649 - 1576697
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  1576649 tcttcatcttcttccttgcacttttttcatcatcttcatgaatatttat 1576697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 47470925 - 47470964
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatc 107  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  47470925 ttaagaaacaacaaccattaacaacatcatcatcaacatc 47470964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35942265 - 35942310
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  35942265 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 35942310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35942763 - 35942718
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  35942763 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 35942718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43546528 - 43546573
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  43546528 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 43546573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 47470857 - 47470902
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  47470857 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 47470902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 50838159 - 50838122
Alignment:
Q  70 aagaaacaacaaccattaacaacatcatcatcatcatc 107  Q
    |||||||||||||||||||||||| |||||||||||||    
T  50838159 aagaaacaacaaccattaacaacaacatcatcatcatc 50838122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 35942696 - 35942660
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatc 104  Q
    ||||||||||||||||||||||||||||| |||||||    
T  35942696 ttaagaaacaacaaccattaacaacatcaccatcatc 35942660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 50838231 - 50838199
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    |||||||||||||||||||||||||||||||||    
T  50838231 tcttcatcttcttccttccacttttttcatcat 50838199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 35942333 - 35942369
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatc 104  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  35942333 ttaagaagcaacaactattaacaacatcatcatcatc 35942369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 54560197 - 54560229
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    ||||| |||||||||||||||||||||||||||    
T  54560197 tcttcttcttcttccttccacttttttcatcat 54560229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 68 - 286
Target Start/End: Complemental strand, 36068010 - 36067794
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    |||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36068010 ttaagaaacaacaaccattaacaacatcatcatcatc---tcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaa 36067914  T
Q  168 agatcaagaga-aattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgat 266  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  36067913 agatcaagagacaattgatgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagagttaaaaagtgattgat 36067814  T
Q  267 tctgaagaggagacatgagt 286  Q
    | ||||||||||||||||||    
T  36067813 tttgaagaggagacatgagt 36067794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 36068077 - 36068029
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36068077 tcttcatcttcttccttccacttttttcatcatcttcatgaatatttat 36068029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 3987143 - 3987104
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatc 107  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  3987143 ttaagaaacaacaaccattaacaatatcatcatcatcatc 3987104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3987214 - 3987169
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  3987214 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 3987169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 30480611 - 30480579
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcat 100  Q
    |||||||||||||||||||||||||||||||||    
T  30480611 ttaagaaacaacaaccattaacaacatcatcat 30480579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36067457 - 36067502
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||    
T  36067457 tctttatcttcttccttccacttttttcatcatcttcatcaatatt 36067502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 36067525 - 36067558
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatc 101  Q
    |||||||||||||||||||||||||| |||||||    
T  36067525 ttaagaaacaacaaccattaacaacaacatcatc 36067558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 5348408 - 5348188
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    |||||||||||||||||||||||||||||||||||||   || |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5348408 ttaagaaacaacaaccattaacaacatcatcatcatc---tcattacaagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaa 5348312  T
Q  168 agatcaagagaaattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgatt 267  Q
    ||||||||||| | |  ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5348311 agatcaagagacaat--tgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgatt 5348214  T
Q  268 ctgaagaggagacatgagtgatgatg 293  Q
    ||||||||||||||||||||||||||    
T  5348213 ctgaagaggagacatgagtgatgatg 5348188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 36429974 - 36429754
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    |||||||||| ||||||||||||||||||||||||||   || |||||||||||||||||||||| |||||||||   ||||||||||||||||||||||    
T  36429974 ttaagaaacagcaaccattaacaacatcatcatcatc---tcattactagcttctcttgtttgttgctcattgtt---atccaaaagggtcgtagcagaa 36429881  T
Q  168 agatcaagaga-aattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgat 266  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  36429880 agatcaagagacaattgatgatgatgatcattgttgttggtaatctcatcgctgctccaaaaaagaaatccatttgaatgagggttaaaaagtgattgat 36429781  T
Q  267 tctgaagaggagacatgagtgatgatg 293  Q
    |||||||||||||||||||||||||||    
T  36429780 tctgaagaggagacatgagtgatgatg 36429754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 293
Target Start/End: Complemental strand, 26380321 - 26380164
Alignment:
Q  146 atccaaaagggtcgtagcagaaagatcaagaga-aattgatgatgatgat---cattgttgttgatgatctcatcgctgctccaaaaaggaaattcattt 241  Q
    ||||||||||||| | ||||| ||||||||||| ||||||||||||||||   ||||||| ||||| ||||||||||||||||||||||||||  |||||    
T  26380321 atccaaaagggtcattgcagagagatcaagagacaattgatgatgatgatgatcattgttattgataatctcatcgctgctccaaaaaggaaacccattt 26380222  T
Q  242 gaa------tgagggttaaaaagtgattgattctgaagaggagacatgagtgatgatg 293  Q
    |||      ||||||||||| | |||||||||||||||| ||||||||||||||||||    
T  26380221 gaatgagcctgagggttaaagattgattgattctgaagatgagacatgagtgatgatg 26380164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 5348475 - 5348427
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5348475 tcttcatcttcttccttccacttttttcatcatcttcatgaatatttat 5348427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 36430041 - 36429993
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36430041 tcttcatcttcttccttccacttttttcatcatcttcatgaatatttat 36429993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 29500239 - 29500272
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatc 101  Q
    ||||||||||||||||||||||||||||||||||    
T  29500239 ttaagaaacaacaaccattaacaacatcatcatc 29500272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29500688 - 29500643
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  29500688 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 29500643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31808441 - 31808486
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  31808441 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 31808486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36429445 - 36429490
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  36429445 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 36429490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36681820 - 36681775
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  36681820 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 36681775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5347887 - 5347919
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    |||||||||||||||||||||||||||||||||    
T  5347887 tcttcatcttcttccttccacttttttcatcat 5347919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 7491478 - 7491514
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatc 104  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7491478 ttaagaaacaataaccattaacaacatcatcatcatc 7491514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 29500620 - 29500584
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatc 104  Q
    |||||||| ||||||||||||||||||||||||||||    
T  29500620 ttaagaaataacaaccattaacaacatcatcatcatc 29500584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 31808509 - 31808545
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatc 104  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31808509 ttaagatacaacaaccattaacaacatcatcatcatc 31808545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 36429513 - 36429545
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcat 100  Q
    |||||||||||||||||||||||||||||||||    
T  36429513 ttaagaaacaacaaccattaacaacatcatcat 36429545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 933835 - 933868
Alignment:
Q  73 aaacaacaaccattaacaacatcatcatcatcat 106  Q
    ||||||||| ||||||||||||||||||||||||    
T  933835 aaacaacaatcattaacaacatcatcatcatcat 933868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7491411 - 7491456
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  7491411 tcttcatcttcttccttccacctttttcatcatcttcatcaatatt 7491456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 97
Target Start/End: Complemental strand, 36681751 - 36681722
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcat 97  Q
    ||||||||||||||||||||||||||||||    
T  36681751 ttaagaaacaacaaccattaacaacatcat 36681722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 14278600 - 14278564
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatc 104  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  14278600 ttaagaaacaacaatcatcaacaacatcatcatcatc 14278564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 4593304 - 4593084
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    |||||||||||||||||||||||||||||||||||||   || |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4593304 ttaagaaacaacaaccattaacaacatcatcatcatc---tcattacaagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaa 4593208  T
Q  168 agatcaagagaaattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgatt 267  Q
    ||||||||||| | |  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4593207 agatcaagagacaat--tgatgatgatcattgttgttgataatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgatt 4593110  T
Q  268 ctgaagaggagacatgagtgatgatg 293  Q
     |||||||||||||||||||||||||    
T  4593109 atgaagaggagacatgagtgatgatg 4593084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 10256392 - 10256169
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    |||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10256392 ttaagaaacaacaaccattaacaacatcatcatcatc---tcattactagcttctcttgtttgttgctcattgttgttatccaaaagggtcgtagcagaa 10256296  T
Q  168 agatcaagaga-aattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgat 266  Q
    ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||    
T  10256295 agatcaagagacaattgatgatgatgatcattgttgttggtaatctcatcgctgctccaaaatggaaatccatttgaatgagggttagaaagtgattgat 10256196  T
Q  267 tctgaagaggagacatgagtgatgatg 293  Q
    ||| |||||||||||||||||||||||    
T  10256195 tctcaagaggagacatgagtgatgatg 10256169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10256459 - 10256411
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10256459 tcttcatcttcttccttccacttttttcatcatcttcatgaatatttat 10256411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4593372 - 4593324
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  4593372 tcttcatcttcttccttccacttttttcaccatcttcatgaatatttat 4593324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 33003114 - 33003150
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatc 104  Q
    |||||||||||||||||||||||||||||||||||||    
T  33003114 ttaagaaacaacaaccattaacaacatcatcatcatc 33003150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 10255900 - 10255939
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatc 107  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  10255900 ttaagaaacaacaaccattaacaacatcatcatcaacatc 10255939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10255832 - 10255877
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  10255832 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 10255877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4592791 - 4592823
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    |||||||||||||||||||||||||||||||||    
T  4592791 tcttcatcttcttccttccacttttttcatcat 4592823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22539087 - 22539055
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    |||||||||||||||||||||||||||||||||    
T  22539087 tcttcatcttcttccttccacttttttcatcat 22539055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 33003633 - 33003594
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatc 107  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  33003633 ttaagaaacaacaatcattatcaacatcatcatcatcatc 33003594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 33003700 - 33003671
Alignment:
Q  1 tcttcatcttcttccttccacttttttcat 30  Q
    ||||||||||||||||||||||||||||||    
T  33003700 tcttcatcttcttccttccacttttttcat 33003671  T

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Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 68 - 293
Target Start/End: Original strand, 47445212 - 47445435
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatctcgttactagcttctcttgtttgttactcattgttgttatccaaaagggtcgtagcagaa 167  Q
    |||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  47445212 ttaagaaacaacaaccattaacaacatcatcatcatc---tcattactagcttctcttgtttgttgctcattgttgttattcaaaagggtcgtagcagaa 47445308  T
Q  168 agatcaagaga-aattgatgatgatgatcattgttgttgatgatctcatcgctgctccaaaaaggaaattcatttgaatgagggttaaaaagtgattgat 266  Q
    ||||||||||| |||| |||||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47445309 agatcaagagacaatttatgatgatgatcattgttgttggtaatctcatcgttgctccaaaaaggaaatccatttgaatgagggttaaaaagtgattgat 47445408  T
Q  267 tctgaagaggagacatgagtgatgatg 293  Q
    ||||||||||||||||||||| |||||    
T  47445409 tctgaagaggagacatgagtggtgatg 47445435  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 36475511 - 36475550
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatcatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36475511 ttaagaaacaacaaccattaacaacatcatcatcatcatc 36475550  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 47445147 - 47445193
Alignment:
Q  3 ttcatcttcttccttccacttttttcatcat-ttcatgaatatttat 48  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  47445147 ttcatcttcttccttccacttttttcatcatcttcatgaatatttat 47445193  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 27585900 - 27585864
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatc 104  Q
    |||||||||||||||||||||||||||||||||||||    
T  27585900 ttaagaaacaacaaccattaacaacatcatcatcatc 27585864  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 36475878 - 36475842
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatc 104  Q
    |||||||||||||||||||||||||||||||||||||    
T  36475878 ttaagaaacaacaaccattaacaacatcatcatcatc 36475842  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36475444 - 36475489
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  36475444 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 36475489  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 47445679 - 47445642
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatca 105  Q
    |||||||||||||||||||||||||| |||||||||||    
T  47445679 ttaagaaacaacaaccattaacaacaacatcatcatca 47445642  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 47445747 - 47445702
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  47445747 tcttcatcttcttccttccacttttttcatcatcttcatcaatatt 47445702  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27585462 - 27585494
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat 33  Q
    |||||||||||||||||||||||||||||||||    
T  27585462 tcttcatcttcttccttccacttttttcatcat 27585494  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 27585529 - 27585565
Alignment:
Q  68 ttaagaaacaacaaccattaacaacatcatcatcatc 104  Q
    ||||||||||| |||||||||||||||||||||||||    
T  27585529 ttaagaaacaataaccattaacaacatcatcatcatc 27585565  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27585969 - 27585924
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||    
T  27585969 tcttaatcttcttccttccacttttttcatcatcttcatcaatatt 27585924  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36475946 - 36475901
Alignment:
Q  1 tcttcatcttcttccttccacttttttcatcat-ttcatgaatatt 45  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||||    
T  36475946 tcttcatcttcttccttccacttttttcgtcatcttcatcaatatt 36475901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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