View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18603_low_2 (Length: 638)
Name: NF18603_low_2
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18603_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 19 - 628
Target Start/End: Original strand, 36603608 - 36604216
Alignment:
| Q |
19 |
acctggacatgtccaaacagatgatgtgtctttgcatatgtctggtatgctttccattaaccaccatgcagtgcttaaatacactagacccgcaattagt |
118 |
Q |
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| T |
36603608 |
acctggacatgtccaaacagatgatgtgtctttgcatatgtctggtatgctttccattaaccaccatgcagtgcttaaatacactagacccgcaattagt |
36603707 |
T |
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| Q |
119 |
gttcccacaacctaatgatcaagttcaagggaaggtttaattaaatccattttttataaatttaatcataaagtctagaaatgaaagtaagatgaatatt |
218 |
Q |
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| T |
36603708 |
gttcccacaacctaatgatcaagttcaagggaaggtttaattaaatccattttttataaatttaatcataaagtctagaaatgaacgtaagatgaatatt |
36603807 |
T |
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| Q |
219 |
tagaaatccgcggccagaaatttgacttattttcatagttagcacatatgtgatcactggatcgagatcagacgatatatattttgatgtagactatttt |
318 |
Q |
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| T |
36603808 |
tagaaatccgcggccagaaatttgacttattctcacagtcagcacatctgtgattactggatcgagatcagacgatatagattttgatgtagactatttt |
36603907 |
T |
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| Q |
319 |
attttaaaataaaaaatatcgatcttgaagtttagatcatttgatcttcatcgaacaatcacatatgtgctaattgcataaatgcatcaaattgcgggcc |
418 |
Q |
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| T |
36603908 |
a-tttgaaataaaaaatattgatcttgaagtttagatcatttgatcttcatctaacgatcacatatgtgctaattgcataaatgcgtcaaattgtgggcc |
36604006 |
T |
|
| Q |
419 |
gcagacaattctgattcgaatatttggtagtgggacaaacctgtgccatgaacatggttctaggagggattttcatgtagtggcctagtttgaagtcttg |
518 |
Q |
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| T |
36604007 |
gcagacaattctgatttgaatatttggtagtgtgacaaacctgtgccatgaacatggttctaggagggattttcatgtagtggcctagtttgaagtcttg |
36604106 |
T |
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| Q |
519 |
caagaaagtgatggcttgtgtcatactaatgtaaccataaaccttgaagcacatgttagctacaggatatccagggtagatatatcctatgatgtactcc |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36604107 |
caagaaagtgatggcttgtgtcatactaatgtaaccataaaccttgaagcacatgttagctacaggatatccagggtagatatatcctatgatgtactcc |
36604206 |
T |
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| Q |
619 |
gtgatgatgt |
628 |
Q |
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| T |
36604207 |
gtgattatgt |
36604216 |
T |
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