View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18603_low_23 (Length: 243)
Name: NF18603_low_23
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18603_low_23 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 32262059 - 32261834
Alignment:
| Q |
18 |
caactctctttgcaattgtttgaccaacgatttatcagacaccactacattgacttttgcattagttgacacttctttagcgcaacttgcaaataagagg |
117 |
Q |
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| T |
32262059 |
caactctctttgcaattgtttgaccaacgatttatcagacaccactacattgacttttgcattagttgacacttctttagcgcaacttgcaaataagagg |
32261960 |
T |
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| Q |
118 |
gtgtttctagtttgttcaacatagctccgtgcaggactcatggtacagatgattgctgttctagcattgcctcctattgaagactgcagtatgcgggtta |
217 |
Q |
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| T |
32261959 |
gtgtttctagtttgttcaacatagctccgtgcaggactcatggtacagatgattgctgttctagcattgcctcctattgaagactgcagtatgcgggtta |
32261860 |
T |
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| Q |
218 |
gctttgaatctctgaaagggatgtgt |
243 |
Q |
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| T |
32261859 |
gctttgaatctctgaaagggatgtgt |
32261834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 6315825 - 6315707
Alignment:
| Q |
80 |
tagttgacacttctttagcgcaacttgcaaataagagggtgtttctagtttgttcaacatagctccgtgc----aggactcatggtacagatgattgctg |
175 |
Q |
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| T |
6315825 |
tagttgccacttctttagcacacctttcaaatgggagggtgtttttggtttgttcaacataactccatgcatgtagggctcatggtatgaatgattgatg |
6315726 |
T |
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| Q |
176 |
ttctagcattgcctcctat |
194 |
Q |
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| T |
6315725 |
ttctagcattgcctcctat |
6315707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 8395554 - 8395366
Alignment:
| Q |
48 |
tttatcagacaccactacattgacttttgcattagttgacacttctttagcgcaacttgcaaataagagggtgtttctagtttgttcaacatagctccgt |
147 |
Q |
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| T |
8395554 |
tttatcagataccactacattgacttgtgcattagtttcaacttctttagcacaacttgcaaagaagagagtgtttcgggtttgttcaacatggctccgc |
8395455 |
T |
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| Q |
148 |
gcaggactcatggtacagatgattgctgttctagcattgcctcctattgaagactgcagtatgcgggttagctttgaatctctgaaagg |
236 |
Q |
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| T |
8395454 |
gcagggctcatggtgcagatgattgcagttctagcattgcctcctaatgatgattgcaatatgcgcgttagctttgaatctctgaaagg |
8395366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 27279549 - 27279336
Alignment:
| Q |
18 |
caactctctttgcaattgtttgaccaacgatttatcagacaccactacattgacttttgcattagttgacacttctttagcgcaacttgcaaataagagg |
117 |
Q |
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| T |
27279549 |
caactctttttgcaattgcttgaccaaggccttatcagacatcactacattaacctgtgctttagtggtaacttcttttgcacaacaagcaaaaagaagc |
27279450 |
T |
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| Q |
118 |
gtgtttctagtttgttcaacatagctccgtgcaggactcatggtacagatgattgctgttctagcattgcctcctattgaagactgcagtatgcgggtta |
217 |
Q |
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| T |
27279449 |
gtgtttctagtttgttcaacatgactccgtgcagggctcaaagtgcaaatgatagctgttctagcattgccacctaagcaaggctgcagtatgcgtgtca |
27279350 |
T |
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| Q |
218 |
gctttgaatctctg |
231 |
Q |
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||| ||||||||| |
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| T |
27279349 |
acttagaatctctg |
27279336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 52845757 - 52845660
Alignment:
| Q |
145 |
cgtgcaggactcatggtacagatgattgctgttctagcattgcctcctattgaagactgcagtatgcgggttagctttgaatctctgaaagggatgtg |
242 |
Q |
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| T |
52845757 |
cgtgcaggactaattgtacaaatgatggctgttctggcattgcctcctaaagagttatgcagaatgcgagtaagcttagaatctctgtaaggtatgtg |
52845660 |
T |
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