View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18603_low_5 (Length: 477)
Name: NF18603_low_5
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18603_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 203 - 371
Target Start/End: Complemental strand, 12849625 - 12849461
Alignment:
| Q |
203 |
tagataagaagataaatatatatcaataatcatttcataaattaattaatttagtgaaagaattagaggataaaaagtgttaagatataagagagctcac |
302 |
Q |
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| T |
12849625 |
tagataagaagataaatatatatcattaatcatttcataaattaatt----tagtgaaataattagaggataaaatgtgttaagatttcagagagctcac |
12849530 |
T |
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| Q |
303 |
agatcaagcaatagcttcctccaaaaagtatcaagagtcaagtctcagatcttcctccaaatattagtt |
371 |
Q |
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| T |
12849529 |
agatcaagcaatagcttcctccaaaaagtgtcaagagtcaagtttcagatcttcctccaaaaattagtt |
12849461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 367 - 462
Target Start/End: Complemental strand, 12849429 - 12849334
Alignment:
| Q |
367 |
tagttcaaagatataaagagaacttcttaaatcagacaaagattttcaaagtaatatgaaaaagttcaaacaataaccaaccaagatataattaat |
462 |
Q |
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| T |
12849429 |
tagttcaaagatataaagagaacttcttaaatcagacaaagattttcaaagtaccaagaaaaagttcaaacaataaccaaccaagatataattaat |
12849334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12849813 - 12849759
Alignment:
| Q |
1 |
aaatttaaacttagggtttttaggaaatgtgaaggattcaagttaatgaaaaatc |
55 |
Q |
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| T |
12849813 |
aaatttgaacttagggtttttagcgaatgtggaagattcaaattaatgaaaaatc |
12849759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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