View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18603_low_6 (Length: 470)
Name: NF18603_low_6
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18603_low_6 |
 | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
| [»] scaffold0854 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 7 - 460
Target Start/End: Original strand, 17749184 - 17749637
Alignment:
| Q |
7 |
ggacatcatcatcgggcatgtttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatg |
106 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17749184 |
ggacatcaacatcgggcatttttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatg |
17749283 |
T |
|
| Q |
107 |
gacaacttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatgg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17749284 |
gacaacttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatgg |
17749383 |
T |
|
| Q |
207 |
agaagacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcatacc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17749384 |
agaagacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattgaagctcaactaaatcattcatacc |
17749483 |
T |
|
| Q |
307 |
ttgattcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgtt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17749484 |
ttgattcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgcatacagtacttgagtgtt |
17749583 |
T |
|
| Q |
407 |
gtttcagataggaaaatgtcatctctaactttaagaaacacacactttgatgat |
460 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17749584 |
gtttcagataggaaaatgtcaattctaactttaagaaacacacactttgatgat |
17749637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 7 - 460
Target Start/End: Original strand, 19050504 - 19050957
Alignment:
| Q |
7 |
ggacatcatcatcgggcatgtttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatg |
106 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19050504 |
ggacatcaacatcgggcatttttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatg |
19050603 |
T |
|
| Q |
107 |
gacaacttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatgg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19050604 |
gacaacttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatgg |
19050703 |
T |
|
| Q |
207 |
agaagacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcatacc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19050704 |
agaagacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattgaagctcaactaaatcattcatacc |
19050803 |
T |
|
| Q |
307 |
ttgattcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgtt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19050804 |
ttgattcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgcatacagtacttgagtgtt |
19050903 |
T |
|
| Q |
407 |
gtttcagataggaaaatgtcatctctaactttaagaaacacacactttgatgat |
460 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19050904 |
gtttcagataggaaaatgtcaattctaactttaagaaacacacactttgatgat |
19050957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 37 - 427
Target Start/End: Original strand, 27464248 - 27464638
Alignment:
| Q |
37 |
cacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggacaacttctctaaactgtttagagagtca |
136 |
Q |
| |
|
||||||||| | |||| | |||||||| ||||||||||||||||| |||||||||| || | |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27464248 |
cacactcttcaaattgcagaggtttagcttgcacttaaataagctctgcaaatgttcacagttcttgatggacaacttctctaaattgtttagagagtca |
27464347 |
T |
|
| Q |
137 |
aaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaagacatttggtacttgagaagcaatat |
236 |
Q |
| |
|
|| |||| ||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||||| || ||| |
|
|
| T |
27464348 |
aaggaaacaggaccattgaacaattcttccaaattttctaggttccaaagatctagtacaaccaacttggagaagacatttggaaattgagaatcagtat |
27464447 |
T |
|
| Q |
237 |
gcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcataccttgattcaacggaacaatatcaggtatgat |
336 |
Q |
| |
|
||| ||||||||||||||| ||| |||||||| || || | |||||| |||| |||||||||||| |||| || |||||||| ||||||||||| |
|
|
| T |
27464448 |
gctgagtgtcaatgaggcagtgcaactgtgaaatggatatcaaattaagctcgactagatcattcataccatgatccataggaacaatctcaggtatgat |
27464547 |
T |
|
| Q |
337 |
atttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgtttcagataggaaaatgtca |
427 |
Q |
| |
|
||||||||||||||||| |||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27464548 |
gtttctccatcccccctccattcttgttagtctaagaacctctgcttcttgcatacagtacttgagtgttgtttcagataggaaaatgtca |
27464638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 423
Target Start/End: Complemental strand, 27910050 - 27909638
Alignment:
| Q |
11 |
atcatcatcgggcatgtttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggaca |
110 |
Q |
| |
|
|||| |||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
27910050 |
atcaacatcgggcatctttccaacgacacactctttagattgaataggtttagtttgcacttaaataagcttttcaaatgtttgcaattactgatggaca |
27909951 |
T |
|
| Q |
111 |
acttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttctag-cctccaaagatctagtacaaccaacatggaga |
209 |
Q |
| |
|
| |||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||| || | ||| | | | ||||||||||||||| |||||| |
|
|
| T |
27909950 |
gatcctctaaactgttcagagagtcaaaggaaagaggaccattgaacaattcttccaaattatccattccttcga-gctctagtacaaccaacttggaga |
27909852 |
T |
|
| Q |
210 |
agacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcataccttg |
309 |
Q |
| |
|
|||| |||| ||||||||| | ||||||||||||||| |||||| | | ||||||||| || |||||||||||||||| |||||||||||| || |
|
|
| T |
27909851 |
agacttttgatacttgagagatgacatgcttagtgtcaataaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatg |
27909752 |
T |
|
| Q |
310 |
attcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgtt |
409 |
Q |
| |
|
||||| |||| || |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27909751 |
tttcaaaggaatcatctcaggtatgatatttctccatcccccctcgattcttcttagtctaataacctctgcttcttgcatacagtacttgagtgttgtt |
27909652 |
T |
|
| Q |
410 |
tcagataggaaaat |
423 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27909651 |
tcagataggaaaat |
27909638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 36 - 422
Target Start/End: Complemental strand, 28130177 - 28129791
Alignment:
| Q |
36 |
acacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggacaacttctctaaactgtttagagagtc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| || |||||| || |||||||| |
|
|
| T |
28130177 |
acacactctttagattgaataggtttaggttgcacttaaataagcttttcaaatgtttacaatcactgatggacaactcctttaaacttttcagagagtc |
28130078 |
T |
|
| Q |
136 |
aaaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaagacatttggtacttgagaagcaata |
235 |
Q |
| |
|
||| |||||||| |||||||||||||||| |||||| ||| | ||||||| ||||||||||||||| |||||||||| |||| |||||||| || | |
|
|
| T |
28130077 |
aaaggaaagaggaccattgaacaattcttccaaattatcttggttccaaagttctagtacaaccaacttggagaagacttttgacacttgagattcagtg |
28129978 |
T |
|
| Q |
236 |
tgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcataccttgattcaacggaacaatatcaggtatga |
335 |
Q |
| |
|
||||||||||||||||||||| | | ||||||||| || || ||||||||||| ||||||||||||||||| || |||||||| |||||||||| |
|
|
| T |
28129977 |
tgcttagtgtcaatgaggcactgtaattgtgaaatggatcccaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatga |
28129878 |
T |
|
| Q |
336 |
tatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgtttcagataggaaaa |
422 |
Q |
| |
|
| ||| ||||| |||||||||||||||||||| ||| |||||||||||||| ||||| |||||||||||| |||||| |||||||| |
|
|
| T |
28129877 |
tgtttttccattccccctcgattcttcttagtgcaagaacctctgcttcttgcatacaatacttgagtgttctttcagttaggaaaa |
28129791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 35 - 421
Target Start/End: Complemental strand, 28079632 - 28079246
Alignment:
| Q |
35 |
gacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggacaacttctctaaactgtttagagagt |
134 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
28079632 |
gacacactctttagattgaataggtttagtttgcacttaaataagcttttcaaatgtttacaatcactgatggacaacttctctaaactgttcagagagt |
28079533 |
T |
|
| Q |
135 |
caaaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaagacatttggtacttgagaagcaat |
234 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||| || | | || | ||||||||||||| |||||||||| |||| |||||||| || | |
|
|
| T |
28079532 |
caaaggaaagaggaccattgaacaattcttccaaattatccattcctttgagctttagtacaaccaacttggagaagacttttgacacttgagactcagt |
28079433 |
T |
|
| Q |
235 |
atgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcataccttgattcaacggaacaatatcaggtatg |
334 |
Q |
| |
|
||||||||||||||||||||| | | ||||||||| || |||||||||||||||| |||||||||||| |||| || |||||||||||||||||| |
|
|
| T |
28079432 |
gtgcttagtgtcaatgaggcactgtaattgtgaaatggatctcaattcaagctcaactagatcattcataccatgatccattggaacaatatcaggtatg |
28079333 |
T |
|
| Q |
335 |
atatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgtttcagataggaaa |
421 |
Q |
| |
|
||||||||||| ||||| ||||||| || ||| |||| |||||||||||||| | |||||||| ||||||||||| ||||||||| |
|
|
| T |
28079332 |
atatttctccaccccccttcgattcctccaagtctaagaacctctgcttcttgaaaacagtactcgagtgttgttttggataggaaa |
28079246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 41 - 422
Target Start/End: Complemental strand, 28144100 - 28143719
Alignment:
| Q |
41 |
ctctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggacaacttctctaaactgtttagagagtcaaaag |
140 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| | ||||||||||||||||||| ||| ||||||||||| | |
|
|
| T |
28144100 |
ctctttagattgaataggtttagtttgcacttaaataagcttttcaaatgtttacaatcttggatggacaacttctctaaaaagttcagagagtcaaagg |
28144001 |
T |
|
| Q |
141 |
aaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaagacatttggtacttgagaagcaatatgctt |
240 |
Q |
| |
|
||||||| |||||||||||||||| |||||| | | | ||||||| | ||||||||||||| |||||||||| |||| |||||||| || | ||||| |
|
|
| T |
28144000 |
aaagaggaccattgaacaattcttccaaattatgttggttccaaagttttagtacaaccaacttggagaagacttttgacacttgagattcagtgtgctt |
28143901 |
T |
|
| Q |
241 |
agtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcataccttgattcaacggaacaatatcaggtatgatattt |
340 |
Q |
| |
|
||| |||||||||||| | | ||||||||| || || ||||||||||| ||||||||||||||||| || |||||||| ||||||||||| ||| |
|
|
| T |
28143900 |
agtatcaatgaggcactgtaattgtgaaatggatcccaaacgaagctcaactatatcattcataccttgatccatgggaacaatctcaggtatgatgttt |
28143801 |
T |
|
| Q |
341 |
ctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgtttcagataggaaaa |
422 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||||||||||||| || || ||||||||||||||||||| |||||||| |
|
|
| T |
28143800 |
ttccattccccctcgattcttcttagtctaagaacctctgcttcttgcatgcaatacttgagtgttgtttcagttaggaaaa |
28143719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 11 - 430
Target Start/End: Complemental strand, 27963120 - 27962701
Alignment:
| Q |
11 |
atcatcatcgggcatgtttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggaca |
110 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | ||||| | |
|
|
| T |
27963120 |
atcaacatcgggcatccttccaatgacacactctttagattgaataggtttaggttgcacttaaataagcttttcaaatgtttacaatcttcaatggaaa |
27963021 |
T |
|
| Q |
111 |
acttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaa |
210 |
Q |
| |
|
|||||||||||||| | ||||||||| || | ||| |||||||||||||||| |||||||||||| ||| ||| ||||| |||||||| ||||||| |
|
|
| T |
27963020 |
gattctctaaactgttcaaagagtcaaaggacaaaggaccattgaacaattcttccaaattttctaggttcctaagttctaggccaaccaacttggagaa |
27962921 |
T |
|
| Q |
211 |
gacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcataccttga |
310 |
Q |
| |
|
||| |||| ||||||||| ||| ||||||| ||||||||||||| || | ||||||| | || ||| |||||| |||| |||||||||||| || |
|
|
| T |
27962920 |
gacttttgttacttgagattcaaaatgcttactgtcaatgaggcaacgtaattgtgaattggatcccaatgaaagctcgactagatcattcataccatgc |
27962821 |
T |
|
| Q |
311 |
ttcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgttt |
410 |
Q |
| |
|
| || |||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||| | |||||||||| ||| ||||| |
|
|
| T |
27962820 |
tccataggaacaatctcaggtatgatatttctccatcccccctccattcttcttagtccaagaaactctgcttcttgcaaacagtacttgtgtgatgttt |
27962721 |
T |
|
| Q |
411 |
cagataggaaaatgtcatct |
430 |
Q |
| |
|
| ||||||||||| |||||| |
|
|
| T |
27962720 |
cggataggaaaatatcatct |
27962701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 11 - 429
Target Start/End: Complemental strand, 11409046 - 11408628
Alignment:
| Q |
11 |
atcatcatcgggcatgtttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggaca |
110 |
Q |
| |
|
|||| |||||||||| ||| || | |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||| |
|
|
| T |
11409046 |
atcaacatcgggcatcttttcaacaacacgctctttagattgaataggtttaggttgcacttaaataagcttttcaaatttgtacaatccttgatggaca |
11408947 |
T |
|
| Q |
111 |
acttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttcta-gcctccaaagatctagtacaaccaacatggaga |
209 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||| || | ||| | ||| | ||||||||||||| || ||| |
|
|
| T |
11408946 |
gcttctctaaactgttcagagagtcaaaggaaagagagccattgaacaattcttccaaattatccattccttc-aagctttagtacaaccaacttgcaga |
11408848 |
T |
|
| Q |
210 |
agacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcataccttg |
309 |
Q |
| |
|
|||| |||| ||||||| | | ||||| |||||||||||||||| ||||||||||| || ||| | ||||||||||| ||||||||||||||| |
|
|
| T |
11408847 |
agacttttgatacttgatatccggtatgcatagtgtcaatgaggcattttagttgtgaaatgcatcttaaatgaagctcaactagatcattcataccttg |
11408748 |
T |
|
| Q |
310 |
attcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgtt |
409 |
Q |
| |
|
|| || ||||| || ||||||||||||||||||||| ||||| ||||||||| |||| |||| ||||||| || ||| ||||| ||| ||||||||||| |
|
|
| T |
11408747 |
atctaaaggaaccatttcaggtatgatatttctccattcccccacgattcttcctagtctaagaacctctgatttttgcatacaatacatgagtgttgtt |
11408648 |
T |
|
| Q |
410 |
tcagataggaaaatgtcatc |
429 |
Q |
| |
|
| ||||||||||| ||||| |
|
|
| T |
11408647 |
ttggataggaaaatctcatc |
11408628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 11 - 422
Target Start/End: Complemental strand, 27998830 - 27998431
Alignment:
| Q |
11 |
atcatcatcgggcatgtttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggaca |
110 |
Q |
| |
|
|||| |||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||| ||| |
|
|
| T |
27998830 |
atcaacatcgggcatccttccagcaacacgctctttagattgaataggtttagtttgcacttaaataagcttttcaaatgtttacaattgatgatgtaca |
27998731 |
T |
|
| Q |
111 |
acttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaa |
210 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| |||||| | ||||||| |||||| ||||| ||||||| ||||| ||||||||| ||||||| |
|
|
| T |
27998730 |
gcttctctaaactgttcagagagtcaaaggaaagaggaccattgcataattcttccaaattatctaggttccaaagttctagcacaaccaacttggagaa |
27998631 |
T |
|
| Q |
211 |
gacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcataccttga |
310 |
Q |
| |
|
||| ||| || |||||||||||||||||||||| | | ||||||||| || || ||||||||||||| |||||||||||| ||| |
|
|
| T |
27998630 |
gactttt------------ccagtatgcttagtgtcaatgaggcattgtaattgtgaaatggatctcaaatcaagctcaactagatcattcataccatga |
27998543 |
T |
|
| Q |
311 |
ttcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgttt |
410 |
Q |
| |
|
|| |||| || ||||||||||||||||||| ||||||||| ||||| ||| ||||| |||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
27998542 |
cccataggaatcatctcaggtatgatatttctccctcccccctccattctatttatcttaagaacctctgcttcttgcatacagtccttgagtgttgttt |
27998443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 40 - 422
Target Start/End: Original strand, 28492244 - 28492626
Alignment:
| Q |
40 |
actctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggacaacttctctaaactgtttagagagtcaaaa |
139 |
Q |
| |
|
||||||||||||| | ||||||| |||||||| ||||||| ||| ||||||||| ||||||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
28492244 |
actctttagattgcagaggtttatgttgcactcaaataagattttcaaatgtttacaatcctcaatggacagattctctaaactgttcagagagtcaaag |
28492343 |
T |
|
| Q |
140 |
gaaagagggccattgaacaattctttcaaattttctag-cctccaaagatctagtacaaccaacatggagaagacatttggtacttgagaagcaatatgc |
238 |
Q |
| |
|
|||||||| || ||||||||||||| |||||| || | ||| | | | ||||||||||||||| ||||||| || |||| |||| |||| || |||| |
|
|
| T |
28492344 |
gaaagaggacctttgaacaattcttccaaattatccattccttcga-gctctagtacaaccaacttggagaatacttttgatactagagattcagtatgt |
28492442 |
T |
|
| Q |
239 |
ttagtgtcaatgaggcaccgcagttgtgaaataa-attgtaattcaagctcaactaaatcattcataccttgattcaacggaacaatatcaggtatgata |
337 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | | || | ||||| |||| |||||||||||| |||| || |||||||| ||||| || ||| |
|
|
| T |
28492443 |
ttagtgtcaatgaggcattgtagttgtgaaatactactcaaact-aagcttgactagatcattcataccatgatccataggaacaatctcaggcatcata |
28492541 |
T |
|
| Q |
338 |
tttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgtttcagataggaaaa |
422 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
28492542 |
tttctccatcccccctccatccttcttagtccaagaacctctgcttcttgcatacaatacttgagtgttgtttcagataggaaaa |
28492626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 11 - 422
Target Start/End: Complemental strand, 28178279 - 28177877
Alignment:
| Q |
11 |
atcatcatcgggcatgtttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggaca |
110 |
Q |
| |
|
|||| |||||||||| ||||| || | ||||||||||||| | |||||||||||||||||||||||||||| |||||||| || || |||||||||| |
|
|
| T |
28178279 |
atcaacatcgggcattcttccaatgaaagactctttagattgcagaggtttaggttgcacttaaataagctttttaaatgtttacattcattgatggaca |
28178180 |
T |
|
| Q |
111 |
acttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaa |
210 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| ||| |||||||||||||||| ||||| || | | || | ||||||||||||| ||||||| |
|
|
| T |
28178179 |
gcttctctaaactgttcagagagtcaaaggaaacaggaccattgaacaattcttctaaattatccattcctttgagctttagtacaaccaacttggagaa |
28178080 |
T |
|
| Q |
211 |
gacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcataccttga |
310 |
Q |
| |
|
||| |||| ||| ||||| |||||||||||||||||| | | ||||||||| || || ||||||| | || |||||||||||| ||| |
|
|
| T |
28178079 |
gacttttgaaactggagaa---------ttagtgtcaatgaggcactgtaattgtgaaatggatctcaaaccaagctcgattagatcattcataccatga |
28177989 |
T |
|
| Q |
311 |
ttcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgttt |
410 |
Q |
| |
|
| || |||||||| ||||||| ||| |||||||| |||||||||||||||| ||||| ||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
28177988 |
tccagaggaacaatctcaggtacgatgtttctccaccccccctcgattcttcctagttcaagaacctctgcttcttgcatacaatacttgagtgttgttt |
28177889 |
T |
|
| Q |
411 |
cagataggaaaa |
422 |
Q |
| |
|
|||||||||||| |
|
|
| T |
28177888 |
cagataggaaaa |
28177877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 28047669 - 28047452
Alignment:
| Q |
11 |
atcatcatcgggcatgtttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggaca |
110 |
Q |
| |
|
|||| |||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
28047669 |
atcaacatcgggcatccttccaacgatacactctttagattgaataggtttaggttgcacttaaataagcttttcaaatgtttacaatccttgatggaca |
28047570 |
T |
|
| Q |
111 |
acttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaa |
210 |
Q |
| |
|
|| |||||||||||| ||||||||||| |||||||| |||||| ||||||||| |||||||||||| ||||||||| ||| |||||||| ||||||| |
|
|
| T |
28047569 |
gctcctctaaactgttcagagagtcaaaggaaagaggaccattgcacaattcttccaaattttctaggttccaaagatgaagttcaaccaacttggagaa |
28047470 |
T |
|
| Q |
211 |
gacatttggtacttgaga |
228 |
Q |
| |
|
||| ||| ||||||||| |
|
|
| T |
28047469 |
gaccgttgatacttgaga |
28047452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 40 - 422
Target Start/End: Original strand, 28472203 - 28472585
Alignment:
| Q |
40 |
actctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggacaacttctctaaactgtttagagagtcaaaa |
139 |
Q |
| |
|
||||||||||||| | ||||||| |||||||| ||||||| ||| ||||||||| ||||||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
28472203 |
actctttagattgcagaggtttatgttgcactcaaataagattttcaaatgtttacaatcctcaatggacagattctctaaactgttcagagagtcaaag |
28472302 |
T |
|
| Q |
140 |
gaaagagggccattgaacaattctttcaaattttctag-cctccaaagatctagtacaaccaacatggagaagacatttggtacttgagaagcaatatgc |
238 |
Q |
| |
|
|||||||| || |||||||||||| |||||| || | ||| | | | ||||||||||||||| ||||||| || |||| |||| |||| || |||| |
|
|
| T |
28472303 |
gaaagaggaccgctgaacaattcttccaaattatccattccttcga-gctctagtacaaccaacttggagaatacttttgatactagagattcagtatgt |
28472401 |
T |
|
| Q |
239 |
ttagtgtcaatgaggcaccgcagttgtgaaataa-attgtaattcaagctcaactaaatcattcataccttgattcaacggaacaatatcaggtatgata |
337 |
Q |
| |
|
||||||||||||||||| | |||||||||||| | | || | |||||| |||| |||||||||||| || | || |||||||| ||||| || ||| |
|
|
| T |
28472402 |
ttagtgtcaatgaggcattgtagttgtgaaatactactcaaact-aagctcgactagatcattcataccatggtccataggaacaatctcaggcatcata |
28472500 |
T |
|
| Q |
338 |
tttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgtttcagataggaaaa |
422 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||| |||||||||||||| ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
28472501 |
tttctccatcccccctccatccttcttagtctaagaacctctgcttcttgcatacaatacttgagtgttgtttcacataggaaaa |
28472585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 5 - 422
Target Start/End: Original strand, 28513190 - 28513607
Alignment:
| Q |
5 |
atggacatcatcatcgggcatgtttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttga |
104 |
Q |
| |
|
||||| |||| |||||||||| ||||| || | ||||||||||||| | ||||||| |||||||| |||||| ||| |||| |||| |||| || | |
|
|
| T |
28513190 |
atggagatcaacatcgggcatcgttccaatgaaagactctttagattgcagaggtttatgttgcactcgaataagattttcaaacgtttacaattctcaa |
28513289 |
T |
|
| Q |
105 |
tggacaacttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttctag-cctccaaagatctagtacaaccaaca |
203 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||||| || ||||||||||||| |||||| || | ||| | | | ||||||||| ||||| |
|
|
| T |
28513290 |
tggacagattctctaaactgttcagagagtcaaaggaaagaggacctttgaacaattcttccaaattatccattccttcga-gttctagtacagccaact |
28513388 |
T |
|
| Q |
204 |
tggagaagacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcat |
303 |
Q |
| |
|
|||||||||| |||| ||||||||| | ||||| || |||||||||||||| | ||||||||||| || || |||||| |||| ||||||||| |
|
|
| T |
28513389 |
tggagaagacttttgatacttgagattcgatatgtttggtgtcaatgaggcattgtagttgtgaaatgcatctcaaagtaagctcgactagatcattcat |
28513488 |
T |
|
| Q |
304 |
accttgattcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagt |
403 |
Q |
| |
|
||| || || |||||||| ||||| || |||||||||||||||||||| |||||||||||| | || | ||| |||||||| ||||| ||| ||||| |
|
|
| T |
28513489 |
accacaatccataggaacaatttcaggaatcatatttctccatcccccctccattcttcttagtcttagaatctcagcttcttgcatacaatacctgagt |
28513588 |
T |
|
| Q |
404 |
gttgtttcagataggaaaa |
422 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28513589 |
gttgtttcagataggaaaa |
28513607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 194 - 422
Target Start/End: Complemental strand, 27952238 - 27952010
Alignment:
| Q |
194 |
acaaccaacatggagaagacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaacta |
293 |
Q |
| |
|
||||||||| |||| |||| ||||||| ||||| || | |||||||||||||||||||| || | ||||||||||| | || || ||||||| ||| |
|
|
| T |
27952238 |
acaaccaacttggacaagaaatttggttcttgaaaatctgtatgcttagtgtcaatgaggaactgaagttgtgaaatgcaatgcaaactaagctcagcta |
27952139 |
T |
|
| Q |
294 |
aatcattcataccttgattcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtataca |
393 |
Q |
| |
|
|| |||||||||||| || || |||||||| ||||||| |||| ||||||||| | ||||||||||||||||| | ||| ||| ||| ||||| |
|
|
| T |
27952138 |
tatttctcataccttgatgcatcgaaacaatattgggtatgagatttatccatcccctttgtattcttcttagtttaagaatctcagctgtttgcataca |
27952039 |
T |
|
| Q |
394 |
gtacttgagtgttgtttcagataggaaaa |
422 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27952038 |
gtacttgagtgttgtttcagataggaaaa |
27952010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 421
Target Start/End: Complemental strand, 28047396 - 28047273
Alignment:
| Q |
298 |
attcataccttgattcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtac |
397 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||||||||||||||||||| | || || |||| ||| ||| |||| |||||||||||||| | ||||||| |
|
|
| T |
28047396 |
attcataccatgatccaaaggaacaatatcaggtatgatatttctccaccacctttcaattcctctaagtctaagaacctctgcttcttgcaaacagtac |
28047297 |
T |
|
| Q |
398 |
ttgagtgttgtttcagataggaaa |
421 |
Q |
| |
|
| || |||||||| ||||||||| |
|
|
| T |
28047296 |
tcgaatgttgttttggataggaaa |
28047273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 184 - 349
Target Start/End: Original strand, 18081253 - 18081418
Alignment:
| Q |
184 |
aagatctagtacaaccaacatggagaagacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattca |
283 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||| | | ||| |||||| || | ||||||||| | ||| || | | |
|
|
| T |
18081253 |
aagatgtagtacaaccaacttggagaagacagttggtacttgagaatcaatatgttcaatgtatatgaggtactgtagttgtgaatcatatttcaaatga |
18081352 |
T |
|
| Q |
284 |
agctcaactaaatcattcataccttgattcaacggaacaatatcaggtatgatatttctccatccc |
349 |
Q |
| |
|
||||||| || ||||||||||||||||| | |||||||| || || |||| ||||||||||||| |
|
|
| T |
18081353 |
agctcaattagatcattcataccttgatctataggaacaatttctggcatgagatttctccatccc |
18081418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 298 - 422
Target Start/End: Original strand, 27434905 - 27435029
Alignment:
| Q |
298 |
attcataccttgattcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtac |
397 |
Q |
| |
|
|||||||||||||| || | |||||| || ||||||| |||||||||| ||| ||||| ||||||||| |||| |||||||||||||| | ||| ||| |
|
|
| T |
27434905 |
attcataccttgatccatagaaacaatctcgggtatgagatttctccattccctctcgaagcttcttagtctaagaacctctgcttcttgcagacaatac |
27435004 |
T |
|
| Q |
398 |
ttgagtgttgtttcagataggaaaa |
422 |
Q |
| |
|
| |||||||||||||||| ||||| |
|
|
| T |
27435005 |
cttagtgttgtttcagataagaaaa |
27435029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 27773433 - 27773360
Alignment:
| Q |
182 |
caaagatctagtacaaccaacatggagaagacatttggtacttgagaagcaatatgcttagtgtcaatgaggca |
255 |
Q |
| |
|
||||||| ||| |||||||||| ||||| |||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
27773433 |
caaagatgtagcacaaccaacaaagagaaaacatttggtagttgagaaccaatatgcttagtgtcaatgaggca |
27773360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 27401382 - 27401453
Alignment:
| Q |
188 |
tctagtacaaccaacatggagaagaca---tttggtacttgagaagcaatatgcttagtgtcaatgaggcac |
256 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
27401382 |
tctagtacaaccaacttggagaagacaacatttggtacttgagaatcaatatgtttagtgtctatgaggcac |
27401453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 26117270 - 26117350
Alignment:
| Q |
190 |
tagtacaaccaacatggagaagacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaat |
270 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||||||| |||||| |||||||| | |||||| | ||||||||||| |
|
|
| T |
26117270 |
tagtacaaccaacttggagaaaacaattggtacttgagaattaatatgtttagtgtctacaaggcactgtagttgtgaaat |
26117350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 270
Target Start/End: Original strand, 26239528 - 26239614
Alignment:
| Q |
184 |
aagatctagtacaaccaacatggagaagacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaat |
270 |
Q |
| |
|
||||| ||||||||||||| ||||||| ||| |||||||||||||| |||||| |||||||| | ||| || | ||||||||||| |
|
|
| T |
26239528 |
aagatttagtacaaccaacttggagaaaacaattggtacttgagaattaatatgtttagtgtctacaaggtactgtagttgtgaaat |
26239614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 270
Target Start/End: Original strand, 26145121 - 26145354
Alignment:
| Q |
37 |
cacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggacaacttctctaaactgtttagagagtca |
136 |
Q |
| |
|
|||| ||||||||||| || |||||| |||| ||||| ||||||||||||| || || ||||| || ||| || ||||||| |||| | |||||| |
|
|
| T |
26145121 |
cacagtctttagattgctgagatttaggctgcatttaaacaagctttgcaaattttcacactccttaatatacagctcctctaaagtgttcattgagtca |
26145220 |
T |
|
| Q |
137 |
aaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaagacatttggtacttgagaagcaatat |
236 |
Q |
| |
|
|| || | || |||||| | ||||||| |||| ||| | ||| ||| | ||||||||||||| | ||||| ||| |||||||||||||| ||||| |
|
|
| T |
26145221 |
aaggagatgggaccattgcataattcttccaaagcttccattctctcaagctttagtacaaccaacttagagaaaacaattggtacttgagaattaatat |
26145320 |
T |
|
| Q |
237 |
gcttagtgtcaatgaggcaccgcagttgtgaaat |
270 |
Q |
| |
|
| |||||||| | |||||| | ||||||||||| |
|
|
| T |
26145321 |
gtttagtgtctactaggcactgtagttgtgaaat |
26145354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 18031464 - 18031504
Alignment:
| Q |
212 |
acatttggtacttgagaagcaatatgcttagtgtcaatgag |
252 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
18031464 |
acatttggtacttgagaatcaatatgtttagtgtctatgag |
18031504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 11 - 422
Target Start/End: Original strand, 8694545 - 8694956
Alignment:
| Q |
11 |
atcatcatcgggcatgtttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggaca |
110 |
Q |
| |
|
|||| |||||| ||| ||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
8694545 |
atcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttacaatccttgatgtaca |
8694644 |
T |
|
| Q |
111 |
acttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaa |
210 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||||| |||||| ||||||||| |||||| || | | ||| |||||||||| ||| ||||||| |
|
|
| T |
8694645 |
gcttctctaaacttttcagagagtcaaaggaaagaggaccattgcacaattcttccaaattatccattcctttgagaactagtacaactaacttggagaa |
8694744 |
T |
|
| Q |
211 |
gacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcataccttga |
310 |
Q |
| |
|
|||| ||| ||| |||||| |||||||||||||||| | |||||| | ||||||||||| || ||| | ||||||||||| |||||||||||| ||| |
|
|
| T |
8694745 |
gacaattgatacatgagaatcaatatgcttagtgtctaagaggcattgtagttgtgaaatgcatcttaaatgaagctcaactagatcattcataccatga |
8694844 |
T |
|
| Q |
311 |
ttcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgttt |
410 |
Q |
| |
|
| | |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| ||||||||||| |||||| ||| |
|
|
| T |
8694845 |
tcgataggaacaatctcaggtatgatatttctccatcccccctcgattcttcttagtctaagaacctctgctgcttgcatacagtacttaagtgttattt |
8694944 |
T |
|
| Q |
411 |
cagataggaaaa |
422 |
Q |
| |
|
||| ||||||| |
|
|
| T |
8694945 |
gagaaaggaaaa |
8694956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 11 - 429
Target Start/End: Original strand, 9330120 - 9330538
Alignment:
| Q |
11 |
atcatcatcgggcatgtttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggaca |
110 |
Q |
| |
|
|||| |||||||||| ||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9330120 |
atcaacatcgggcatccttctaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggaca |
9330219 |
T |
|
| Q |
111 |
acttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaa |
210 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
9330220 |
gcttctctaaactgttcaaagagtcaaaggaaagaggaccattgaacaattcttccaaattttctaattcattaagatctagtacaaccaacttggagaa |
9330319 |
T |
|
| Q |
211 |
gacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcataccttga |
310 |
Q |
| |
|
||| |||| ||||||||| || ||||| |||||||||||||||| |||||| |||| || || | ||||||| | | |||||||||||||||| |
|
|
| T |
9330320 |
gacttttgatacttgagattcagtatgcgtagtgtcaatgaggcattttagttgtaaaatgcatctcaaatgaagctcagccagatcattcataccttga |
9330419 |
T |
|
| Q |
311 |
ttcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgttt |
410 |
Q |
| |
|
| ||| |||||||| ||||||||||| |||||||| ||| ||||||||| | | | ||| |||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
9330420 |
tccaaaggaacaatctcaggtatgatgtttctccacaccctctcgattctacacaatctaataccctctgattcttgcatacaatacttgagtgttgttt |
9330519 |
T |
|
| Q |
411 |
cagataggaaaatgtcatc |
429 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
9330520 |
cagataggaaaaagtcatc |
9330538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 11 - 429
Target Start/End: Original strand, 9383903 - 9384321
Alignment:
| Q |
11 |
atcatcatcgggcatgtttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggaca |
110 |
Q |
| |
|
|||| |||||||||| ||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9383903 |
atcaacatcgggcatccttctaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggaca |
9384002 |
T |
|
| Q |
111 |
acttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaa |
210 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
9384003 |
gcttctctaaactgttcaaagagtcaaaggaaagaggaccattgaacaattcttccaaattttctaattcattaagatctagtacaaccaacttggagaa |
9384102 |
T |
|
| Q |
211 |
gacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcataccttga |
310 |
Q |
| |
|
||| |||| ||||||||| || ||||| |||||||||||||||| |||||| |||| || || | ||||||| | | |||||||||||||||| |
|
|
| T |
9384103 |
gacttttgatacttgagattcagtatgcgtagtgtcaatgaggcattttagttgtaaaatgcatctcaaatgaagctcagccagatcattcataccttga |
9384202 |
T |
|
| Q |
311 |
ttcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgttt |
410 |
Q |
| |
|
| ||| |||||||| ||||||||||| |||||||| ||| ||||||||| | | | ||| |||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
9384203 |
tccaaaggaacaatctcaggtatgatgtttctccacaccctctcgattctacacaatctaataccctctgattcttgcatacaatacttgagtgttgttt |
9384302 |
T |
|
| Q |
411 |
cagataggaaaatgtcatc |
429 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
9384303 |
cagataggaaaaagtcatc |
9384321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 9329826 - 9329914
Alignment:
| Q |
11 |
atcatcatcgggcatgtttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatc |
99 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||| ||||||||| ||||| |
|
|
| T |
9329826 |
atcaacatcgggcatctttccaacgacacactctttagattgaataggtttatgttgcacttgaataaacttttcaaatgtttacaatc |
9329914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 9383609 - 9383697
Alignment:
| Q |
11 |
atcatcatcgggcatgtttccagcgacacactctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatc |
99 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||| ||||||||| ||||| |
|
|
| T |
9383609 |
atcaacatcgggcatctttccaacgacacactctttagattgaataggtttatgttgcacttgaataaacttttcaaatgtttacaatc |
9383697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 108 - 422
Target Start/End: Original strand, 26027162 - 26027476
Alignment:
| Q |
108 |
acaacttctctaaactgtttagagagtcaaaagaaagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatgga |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||||||||| | ||||||||||||||| |||| |||| |
|
|
| T |
26027162 |
acaacttctctaaactgttgagagagtcaaaggaaagaggaccattgaacaattcttccaaattttctaggttagaaagatctagtacaatcaacttgga |
26027261 |
T |
|
| Q |
208 |
gaagacatttggtacttgagaagcaatatgcttagtgtcaatgaggcaccgcagttgtgaaataaattgtaattcaagctcaactaaatcattcatacct |
307 |
Q |
| |
|
|||||| |||| ||||||||| || || ||||||||| ||||||| || | | ||||||||| || || |||||| |||| |||||||||||| |
|
|
| T |
26027262 |
gaagacttttgatacttgagattcagtaggcttagtgttaatgaggtactgtaattgtgaaatggatctcaaagaaagctcgactagatcattcatacca |
26027361 |
T |
|
| Q |
308 |
tgattcaacggaacaatatcaggtatgatatttctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttg |
407 |
Q |
| |
|
|||| || ||||||| ||||| |||||||||||||| || ||||| || ||| ||||| |||| | ||||||||||| ||||| |||| |||||||| |
|
|
| T |
26027362 |
tgatccatatgaacaatctcaggcatgatatttctccaccctccctcaatccttgttagtctaagaatttctgcttcttgcatacaatactcgagtgttg |
26027461 |
T |
|
| Q |
408 |
tttcagataggaaaa |
422 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26027462 |
tttcagataggaaaa |
26027476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 42 - 422
Target Start/End: Complemental strand, 24177 - 23797
Alignment:
| Q |
42 |
tctttagattgaataggtttaggttgcacttaaataagctttgcaaatgtttgcaatccttgatggacaacttctctaaactgtttagagagtcaaaaga |
141 |
Q |
| |
|
||||||||||| | |||||| | | | | ||||| ||||||||||||||||| ||||||||||| || | ||||| |||| | || ||| ||||||| || |
|
|
| T |
24177 |
tctttagattgcagaggttttgctcgaatttaaacaagctttgcaaatgtttacaatccttgattgatatcttctgtaaattcttcagaaagtcaaagga |
24078 |
T |
|
| Q |
142 |
aagagggccattgaacaattctttcaaattttctagcctccaaagatctagtacaaccaacatggagaagacatttggtacttgagaagcaatatgctta |
241 |
Q |
| |
|
|| || ||||| |||| ||||| ||||||||| | || | | ||||||||||||| |||| | ||||| ||| |||| | |||||| ||| |
|
|
| T |
24077 |
aacgggaccattaaacagttcttccaaattttccattctgtccaattttagtacaaccaacttggacacaacattcggtccttggaacacaatatccttc |
23978 |
T |
|
| Q |
242 |
gtgtcaatgaggcaccgcagttgtgaaata-aattgtaattcaagctcaactaaatcattcataccttgattcaacggaacaatatcaggtatgatattt |
340 |
Q |
| |
|
||||||| |||| |||| ||||||||||| || | || | ||| ||||||| ||| ||||||||||||| || | |||||| | ||||||| |||| |
|
|
| T |
23977 |
gtgtcaacgaggtaccgaagttgtgaaatgcaactcaaact-aagttcaactatatctttcataccttgatccatagaaacaatctggggtatgagattt |
23879 |
T |
|
| Q |
341 |
ctccatcccccctcgattcttcttagtttaagcacctctgcttcttgtatacagtacttgagtgttgtttcagataggaaaa |
422 |
Q |
| |
|
||||||||| |||||||||||||||| |||| ||||| | | ||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
23878 |
ctccatcccgtctcgattcttcttagtctaagaacctcggttgtttgcatacagtacttgagtgttgcttcagataagaaaa |
23797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 4429 - 4470
Alignment:
| Q |
188 |
tctagtacaaccaacatggagaagacatttggtacttgagaa |
229 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
4429 |
tctagtacaaccaacttggagaagacacttggtacttcagaa |
4470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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