View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18603_low_8 (Length: 449)
Name: NF18603_low_8
Description: NF18603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18603_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 36956757 - 36956323
Alignment:
| Q |
1 |
agcagagaatacagagtaaagctcaatttatggatatcatacacataactgatcaaacctacgctgctcagctccaaaaatagacatataacaaaagcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36956757 |
agcagagaatacagagtaaagctcaatttatggatatcatacacataactgatcaaacctacgctgctcagctccagaaatagacatataacaaaagcaa |
36956658 |
T |
|
| Q |
101 |
atttcgctcatcaattaatatatgcaaaaacaaaacaaaataggtcaaattactataacaccacggacaattaagaatgcattatgtaaaatatcacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36956657 |
atttcgctcatcaattaatatatgcaaaaacaaaacaaaataggtcaaattactataacaccacggacaattaagaatgcattatgtaaaatatcacaaa |
36956558 |
T |
|
| Q |
201 |
aacaaattattgatcaacaaaagatattaagacaacacattacaattctatcatctaaaataagcaattaggcaaacaaaaaatcaaatcatctattcca |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36956557 |
aacaaattgttgatcaacaaaagatattaagacaacacattacaattctatcatctaaaataagcaattaggcaaacaaaaaatcaaatcatctattcca |
36956458 |
T |
|
| Q |
301 |
ttttgtgatcatcaacaaatctttcaaaatcaatgctaaatctgataagtaattttagttttatactccatattactaattacgtcgtcaa-aaaatagt |
399 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36956457 |
ttttgtgatcatcaaaaaatctttcaaaatcaatgctaaatctgataagtaattttagttttatactccatattactaattacgtcgtcaaaaaaatagt |
36956358 |
T |
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| Q |
400 |
aaatcatatcatacaaatacattattcaacaaatc |
434 |
Q |
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| T |
36956357 |
aaatcatatcatacaaatacattattcaacaaatc |
36956323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 36971093 - 36970661
Alignment:
| Q |
1 |
agcagagaatacagagtaaagctcaatttatggatatcatacacataactgatcaaacctacgctgctcag-ctccaaaaatagacatataacaaaagca |
99 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||| | |
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| T |
36971093 |
agcaaagaatacagagtaaagatcaatttatggatatcatgcacataaccgatcaaacctacactgctcaggctccagaaatagacatataacaaaagaa |
36970994 |
T |
|
| Q |
100 |
aatttcgctcatcaattaatatatgcaaaaacaaaacaaaataggtcaaattactataacaccacggacaattaagaatgcatt-atgtaaaatatcaca |
198 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
36970993 |
aatttcgctcatcgattaatatatgcaaaaacaaaacaaaataggtcaaattactataacaccacagacaattaagaatgcattcatgtaaaatatcaca |
36970894 |
T |
|
| Q |
199 |
aaaacaaattattgatcaacaaaagatattaagacaacacattacaattctatcatctaaaataagcaattagg-caaacaaaaaatcaaatcatctatt |
297 |
Q |
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||| ||||| ||||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||||||||| || |
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| T |
36970893 |
aaa--aaattgttgatcaacaaaagaaattaggacaacacattccaattctatcatttaaaataagcaattaggccaaaaaaaaaatcaaatcatctctt |
36970796 |
T |
|
| Q |
298 |
ccattttgtgatcatcaacaaatctttcaaaatcaatgctaaatctgataagtaattttagttttatactccatattactaattacgtcgtcaaaaaata |
397 |
Q |
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||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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|
| T |
36970795 |
ccattttatgatcatcaactaatcatgcaaaatcaatgctaaatctgataagtaattttagttttatactccatattactaattacgtc--aactaaata |
36970698 |
T |
|
| Q |
398 |
gtaaatcatatcatacaaatacattattcaacaaatc |
434 |
Q |
| |
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|||||||||||||||| ||| |||||||||||||||| |
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|
| T |
36970697 |
gtaaatcatatcatactaatccattattcaacaaatc |
36970661 |
T |
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