View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18604_high_1 (Length: 553)
Name: NF18604_high_1
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18604_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 19 - 544
Target Start/End: Complemental strand, 31104100 - 31103575
Alignment:
| Q |
19 |
tttgtttcctcaagacgttgcaagaattgaaatttatggtagttgcgacggtgttttttgtctcaacggtatttcctcatgcataactcgccacgatcaa |
118 |
Q |
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| T |
31104100 |
tttgtttcctcaagacgttgcaagaattgaaatttatggtagttgcgacggtgttttttgtctcaaaggtatttcctcatgcataactcgccacgatcaa |
31104001 |
T |
|
| Q |
119 |
ttgattttgtggaacccaacaactaaagaggtccattttattcctcgtgctccctcactcggtaaccattactctgatgaatacttgtatggttttggtg |
218 |
Q |
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| T |
31104000 |
ttgattttgtggaacccaacaactaaagaggtccatcttattcctcgcgctccctcactcggtaaccattactctgatgaatccttgtatggttttggtg |
31103901 |
T |
|
| Q |
219 |
ctgttaacgacgacttcaaagttgtcaaactaaacatctctaatactaataggatggcgaaaataaattctcttttgaaggcagacatttatgacctaag |
318 |
Q |
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| T |
31103900 |
ctgttaacgacgacttcaaagttgtcaaactaaacatctctaatagtaataggatggcgaaaataaattctcttttaaaggcagacatttatgacctaag |
31103801 |
T |
|
| Q |
319 |
cacaaaatcatggacccccctcgtcagccatcctcctattactatggtcacacggctacagccttcaagatacaacactcttgttaacggtgtttattat |
418 |
Q |
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| T |
31103800 |
cacaaaatcatggacccccctcgtcagccatcctcctattactatggtcacacggatacagccttcaagatacaacactcttgttaacggtgtttattat |
31103701 |
T |
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| Q |
419 |
tggattacgagctctgatggctctgatgctgcaaaaatcctttgctttgactttcgcgataaccagtttcggaaactagaagctccaaagttaggtcact |
518 |
Q |
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| T |
31103700 |
tggattacaagctctgatggctctgatgctgcaagaatcctttgctttgactttcgcgataaccagtttcggaaactagaagctccaaagttaggtcact |
31103601 |
T |
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| Q |
519 |
atatcccctttttctgtgatgatgtc |
544 |
Q |
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| T |
31103600 |
atatcccctttttctgtgatgatgtc |
31103575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 53 - 489
Target Start/End: Original strand, 31106934 - 31107370
Alignment:
| Q |
53 |
tatggtagttgcgacggtgttttttgtctcaacggtatttcctcatgcataactcgccacgatcaattgattttgtggaacccaacaactaaagaggtcc |
152 |
Q |
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| T |
31106934 |
tatggtagttgcaacggttttttttgtctcaaatgtatttacccaggccaaactcatcatgatcaattgattatgcggaacccaacaactaatgaggtcc |
31107033 |
T |
|
| Q |
153 |
attttattcctcgtgctccctcactcggtaaccattactctgatgaatacttgtatggttttggtgctgttaacgacgacttcaaagttgtcaaactaaa |
252 |
Q |
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| T |
31107034 |
actttattccccgtgctccttcactcggtagccattacattgatgaatccttgtatagttttggtgctgttaatggcgacttcaaagttgtcaaactcaa |
31107133 |
T |
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| Q |
253 |
catctctaatactaataggatggcgaaaataaattctcttttgaaggcagacatttatgacctaagcacaaaatcatggac-ccccctcgtcagccatcc |
351 |
Q |
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| T |
31107134 |
tatctctaataatattgggaagacgaaaatgccttaccttttatcggcacaagtttataatccaatcactaaatcctggacataccctcgattg---tcc |
31107230 |
T |
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| Q |
352 |
tcctattactatggtcacacggctacagccttc-aagatacaacactcttgttaacggtgtttattattggattacgagctctgatggctctgatgctgc |
450 |
Q |
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|||| ||||||||||||||| | ||| ||| | ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| | ||||| | |
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| T |
31107231 |
tcctcttactatggtcacacctcaacaacctccaaagatacaacactcttgttaacggtgtttataattaaattacgagctctgattgctatcatgctac |
31107330 |
T |
|
| Q |
451 |
aaaaatcctttgc-tttgactttcgcgataaccagtttcg |
489 |
Q |
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| T |
31107331 |
aaacattctctgcttttgacttccgcaataaccagtttcg |
31107370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 31105840 - 31105717
Alignment:
| Q |
59 |
agttgcgacggtgttttttgtctcaacggtatttcctcatgcataactcgccacgatcaattgattt--tgtggaacccaacaactaaagaggtccattt |
156 |
Q |
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| T |
31105840 |
agttgcaacggtgttttttgtctcaaaggtatttacccgggcaaaactcatcccgatcaattgattgcatatggaacccaacaactaatgaggttcacct |
31105741 |
T |
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| Q |
157 |
tattcctcgtgctccctcactcgg |
180 |
Q |
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| T |
31105740 |
tattccccgtgctccctcactcgg |
31105717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 31097185 - 31097137
Alignment:
| Q |
380 |
ccttcaagatacaacactcttgttaacggtgtttattattggattacga |
428 |
Q |
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| T |
31097185 |
ccttcaagatacaacactcttgctaacggtgtttatcattggattacga |
31097137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 31097412 - 31097308
Alignment:
| Q |
139 |
aactaaagaggtccattttattcctcgtgctccctcactcggtaaccattactctgatgaatacttgtatggttttggtgctgttaacgacgacttcaaa |
238 |
Q |
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| T |
31097412 |
aactaatgaggtccacctcattcctcgagctccgtcactctgtacctgttacatcgatgaatgcttgtatggttttggtgttgttaacaacgacttcaaa |
31097313 |
T |
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| Q |
239 |
gttgt |
243 |
Q |
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||||| |
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| T |
31097312 |
gttgt |
31097308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 507
Target Start/End: Complemental strand, 31097124 - 31097064
Alignment:
| Q |
447 |
ctgcaaaaatcctttgctttgactttcgcgataaccagtttcggaaactagaagctccaaa |
507 |
Q |
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| T |
31097124 |
ctgcaaacatcatctgctttgactttcgcaataaccagtttcgtcaacttaaagctccaaa |
31097064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 426
Target Start/End: Complemental strand, 7495427 - 7495389
Alignment:
| Q |
388 |
atacaacactcttgttaacggtgtttattattggattac |
426 |
Q |
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| T |
7495427 |
atacaacactcttgttaatggtgtttatcattggattac |
7495389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 426
Target Start/End: Original strand, 7873377 - 7873423
Alignment:
| Q |
380 |
ccttcaagatacaacactcttgttaacggtgtttattattggattac |
426 |
Q |
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| T |
7873377 |
ccttctagatataacactcttgttaacggcgtttatcattggattac |
7873423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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