View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18604_high_12 (Length: 265)
Name: NF18604_high_12
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18604_high_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 54536517 - 54536264
Alignment:
| Q |
13 |
aaatcgtttggtggcgagttactttggataattacgttcagtcacttgatactttgacaaacatatatagagccaagagagacccctttcaccatatcaa |
112 |
Q |
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| T |
54536517 |
aaatcgtttggtggcgagttactttggataattacgttcagtcacttgatactttgacaaacatatatagagccaagagagacccttttcaccatatcaa |
54536418 |
T |
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| Q |
113 |
aatggatgagtacgtttcaacttccacgggatattaattcactgggtttttaacac-nnnnnnnnatttccaattcaacccttggcattattattgtatc |
211 |
Q |
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| T |
54536417 |
aatggatgagtacgtttcaacttccacaggatattaattcactgggtttttaacactttttttttatttccaattcaacccttggcattattattgtatc |
54536318 |
T |
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| Q |
212 |
attttattgttaattaattaatagtatatgaatatgatgctgtattaaacacgc |
265 |
Q |
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| T |
54536317 |
attttattgttaattaattaatagtatatgaatatgatgctgtattaaacacgc |
54536264 |
T |
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