View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18604_high_18 (Length: 224)
Name: NF18604_high_18
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18604_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2149957 - 2150178
Alignment:
| Q |
1 |
ctgcaagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaatgaggttcctgattacttggttctatgttcgtaattgt |
100 |
Q |
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| T |
2149957 |
ctgcaagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaatgaggttcctgattacttggttctatgttcgtaattgt |
2150056 |
T |
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| Q |
101 |
ttgtgtttgttgggtatggttttgctgtctatctttacatacagataaagttacccacatgaagaacaaaagtccagatattccccataccactggaaaa |
200 |
Q |
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| T |
2150057 |
ttgtgtttgttgggtatggttttgctgtctatctttacatacagataaagttacccacatgaagaacaaaagtccagatattccccataccactggaaaa |
2150156 |
T |
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| Q |
201 |
aagtatatatttttagcctttg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
2150157 |
aagtatatatttttagcctttg |
2150178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 2140948 - 2141136
Alignment:
| Q |
1 |
ctgcaagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaatgaggttcctgattacttggttctatgttcgtaattgt |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2140948 |
ctgctagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaatgaggttcctgattacttggttctatgttcgtaattgt |
2141047 |
T |
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| Q |
101 |
ttgtgtttgttgggtatggttttgctgtctatctttacatacagataaagttacccacatgaagaacaaaagtccagatattccccata |
189 |
Q |
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| T |
2141048 |
ttgtgtttgttgggtatgattttgctgtctatctttacatagggatagagttacccacatgaagagcaaaattccagttagtccccata |
2141136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 213
Target Start/End: Original strand, 2145487 - 2145694
Alignment:
| Q |
6 |
agttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaatgaggttcctgattacttggttctatgttcgtaattgtttgtg |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| | |||||||||||| |
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| T |
2145487 |
agttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaagagggttcccgatcacttggttctatgatgataattgtttgtg |
2145586 |
T |
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| Q |
106 |
tttgttgggtatggttttgctgtctatctttacatacagataaagttacccacatgaagaacaaaagtccagatattccccataccactggaaaaaagta |
205 |
Q |
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|||| ||| ||||||||||||||||||||||||||| |||| |||||||| ||||| || ||||| ||||| || ||||||||| ||| ||||||||| |
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| T |
2145587 |
tttgctggatatggttttgctgtctatctttacatagggatagagttacccccatgaggagcaaaattccagttactccccatactacttcaaaaaagta |
2145686 |
T |
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| Q |
206 |
tatatttt |
213 |
Q |
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||||||| |
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| T |
2145687 |
gatatttt |
2145694 |
T |
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