View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18604_high_5 (Length: 414)

Name: NF18604_high_5
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18604_high_5
NF18604_high_5
[»] chr5 (2 HSPs)
chr5 (11-398)||(12541142-12541523)
chr5 (14-398)||(28385791-28386172)
[»] chr7 (2 HSPs)
chr7 (179-398)||(3417033-3417252)
chr7 (15-156)||(3416881-3417022)
[»] chr2 (3 HSPs)
chr2 (15-396)||(13440659-13441034)
chr2 (15-398)||(13448820-13449197)
chr2 (184-394)||(13455295-13455505)
[»] chr6 (1 HSPs)
chr6 (209-398)||(12589699-12589888)
[»] chr4 (4 HSPs)
chr4 (313-396)||(48962753-48962836)
chr4 (317-398)||(48958604-48958685)
chr4 (318-398)||(48911984-48912064)
chr4 (362-398)||(48951691-48951727)
[»] chr8 (1 HSPs)
chr8 (320-398)||(12641122-12641200)
[»] scaffold0536 (1 HSPs)
scaffold0536 (331-398)||(6163-6230)


Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 398
Target Start/End: Complemental strand, 12541523 - 12541142
Alignment:
Q  11 aataatccacctgattgtatcattgccgactcttcttactcatggggtaatgacttggctcgtaagctacaagtacccaatttcacattcaatggatcct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12541523 aataatccacctgattgtatcattgccgactcttcttactcatggggtaatgacttggctcgtaagctacaagtacccaatttcacattcaatggatcct 12541424  T
Q  111 ctctttttgctgtctccctcatggaatcccttagaaaaaacaatttgcttcataccaattctgattctgattctgattcggattcaagttcgtatgtcgt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||    
T  12541423 ctctttttgctgtctccctcatggaatcccttagaaaaaacaatttgcttcataccaattctgattctgattc------ggattcaagttcgtatgtcgt 12541330  T
Q  211 tccaaattttcctcatcgtatcaccatgtgcagtaaaccgccaaaggttctcagcaaattcataggattgatgcttgatacagtgttcaaaagtacaggc 310  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12541329 tccaaattttcctcatcgtatcaccatgtgcagtaaaccgtcaaaggttctcagcaaattcataggattgatgcttgacacagtgttcaaaagtacaggc 12541230  T
Q  311 tacattatcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttg 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12541229 tacattatcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttg 12541142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 14 - 398
Target Start/End: Complemental strand, 28386172 - 28385791
Alignment:
Q  14 aatccacctgattgtatcattgccgactcttcttactcatggggtaatgacttggctcgtaagctacaagtacccaatttcacattcaatggatcctctc 113  Q
    |||||||| |||||||| ||||| |||||  | | |||||||| |||||||||||| |  ||||| ||| | || ||| | || || |||||||| ||||    
T  28386172 aatccaccggattgtattattgctgactccgcattctcatgggctaatgacttggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctc 28386073  T
Q  114 tttttgctgtctccctcatggaatcccttagaaaaaacaatttgcttcataccaattctgattctgattctgattcggattcaagttcgtatgtcgttcc 213  Q
    | |||||||||||  || |  | || ||| ||| ||||||||| ||||||||       ||| ||||| ||||||| ||||||||||| |||||||||||    
T  28386072 tctttgctgtctcgatctttcattctcttcgaacaaacaatttacttcataca------gatgctgatgctgattcagattcaagttcatatgtcgttcc 28385979  T
Q  214 aaattttcctcatcgta---tcaccatgtgcagtaaaccgccaaaggttctcagcaaattcataggattgatgcttgatacagtgttcaaaagtacaggc 310  Q
    |||| ||| ||||  ||   | ||| |||| |||||||| ||||||||||||||||  ||||||||| |||||||||| || ||| ||||||||||||||    
T  28385978 aaatcttcatcatgataatattaccttgtgtagtaaaccaccaaaggttctcagcatgttcataggaatgatgcttgacacggtgctcaaaagtacaggc 28385879  T
Q  311 tacattatcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttg 398  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28385878 tacatcatcaacaactttgttgaacttgatggagaagagtgtgtcaaacactacgagaaaaccacgggtcacaaggcttggcatcttg 28385791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 179 - 398
Target Start/End: Original strand, 3417033 - 3417252
Alignment:
Q  179 gattctgattcggattcaagttcgtatgtcgttccaaattttcctcatcgtatcaccatgtgcagtaaaccgccaaaggttctcagcaaattcataggat 278  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||||||     
T  3417033 gattctgattcggattcaagttcctatatcgttccaaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcataggac 3417132  T
Q  279 tgatgcttgatacagtgttcaaaagtacaggctacattatcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacggg 378  Q
    |||||||||| ||||||||||||||||  ||||  ||  ||||||||||  ||||||||||||||||||||||| | |||||||| |||||||||   ||    
T  3417133 tgatgcttgacacagtgttcaaaagtaatggctttatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgtagg 3417232  T
Q  379 tcacaaggcttggcatcttg 398  Q
    ||||||||||||||||||||    
T  3417233 tcacaaggcttggcatcttg 3417252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 3416881 - 3417022
Alignment:
Q  15 atccacctgattgtatcattgccgactcttcttactcatggggtaatgacttggctcgtaagctacaagtacccaatttcacattcaatggatcctctct 114  Q
    ||||||| |||||||||||  |||||||| | ||| |||||| |||||||||||| |  ||||| ||| | || |||||||||| |||||  |  ||  |    
T  3416881 atccaccagattgtatcatctccgactctgcatacccatgggttaatgacttggcccagaagcttcaaatccctaatttcacatacaatgttttgtccgt 3416980  T
Q  115 ttttgctgtctccctcatggaatcccttagaaaaaacaattt 156  Q
    |||| | ||||  ||||||||||||||||||| ||| |||||    
T  3416981 ttttccagtcttgctcatggaatcccttagaacaaataattt 3417022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 396
Target Start/End: Complemental strand, 13441034 - 13440659
Alignment:
Q  15 atccacctgattgtatcattgccgactcttcttactcatggggtaatgacttggctcgtaagctacaagtacccaatttcacattcaatggatcctctct 114  Q
    ||||||| |||||||||||  |||||||  | ||| |||||| |||||||||||| | |||||| ||  | || ||  |||||||||||||||  || ||    
T  13441034 atccaccagattgtatcatctccgactccgcatacccatgggctaatgacttggcgcataagcttcagatcccaaacctcacattcaatggattgtcact 13440935  T
Q  115 ttttgctgtctccctcatggaatcccttagaaaaaacaatttgcttcataccaattctgattctgattctgattcggattcaagttcgtatgtcgttcca 214  Q
    |||| | ||||| ||| ||||||||||   |  |||||| || ||||||      |||||| || ||||||||| |||||||||||| | ||| ||||||    
T  13440934 ttttaccgtctctctcgtggaatccctccaagcaaacaacttacttcat------tctgatactaattctgatttggattcaagttcctttgttgttcca 13440841  T
Q  215 aattttcctcatcgtatcaccatgtgcagtaaaccgccaaaggttctcagcaaattcataggattgatgcttgatacagtgttcaaaagtacaggctaca 314  Q
    ||||||||||||||||| ||| ||||| | ||||||||||||||  | ||||||||| ||  | |||||||||  |||||| ||||||||| ||    ||    
T  13440840 aattttcctcatcgtataaccttgtgcggaaaaccgccaaaggtaattagcaaattcctaaaaatgatgcttgggacagtgctcaaaagtaaagcactca 13440741  T
Q  315 ttatcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatct 396  Q
    | |||||||||||   ||||||||| |||||||||||  |||||||||| |||||||||||||||||||||| |||||||||    
T  13440740 tcatcaacaacttcactgaacttgacggagaagagtgcatccaacactatgagaaaaccacgggtcacaaggtttggcatct 13440659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 15 - 398
Target Start/End: Complemental strand, 13449197 - 13448820
Alignment:
Q  15 atccacctgattgtatcattgccgactcttcttactcatggggtaatgacttggctcgtaagctacaagtacccaatttcacattcaatggatcctctct 114  Q
    ||||||| |||||||||||  |||||||  | ||| |||||| ||||||||||||   |||| | ||  | || ||  |||||||||||||||  |  ||    
T  13449197 atccaccggattgtatcatctccgactccacgtacccatgggttaatgacttggccgataagtttcagatcccaaacatcacattcaatggattgtgcct 13449098  T
Q  115 ttttgctgtctccctcatggaatcccttagaaaaaacaatttgcttcataccaattctgattctgattctgattcggattcaagttcgtatgtcgttcca 214  Q
    |||||||||||||||| ||||| |||| | || ||||||||| |||      || ||| |  | ||||||||||||||||||||||| | ||| ||||||    
T  13449097 ttttgctgtctccctcgtggaaaccctcaaaacaaacaatttactt------aagtctcagacagattctgattcggattcaagttcctttgttgttcca 13449004  T
Q  215 aattttcctcatcgtatcaccatgtgcagtaaaccgccaaaggttctcagcaaattcataggattgatgcttgatacagtgttcaaaagtacagg-ctac 313  Q
    ||||||||||| | ||||||| ||||  | ||||||||||||||  || | | |||||| ||| |||||||||| || ||| | ||||||| ||  |||     
T  13449003 aattttcctcaccatatcaccttgtgtggaaaaccgccaaaggtaatcggtatattcatgggaatgatgcttgagacggtgcttaaaagtaaagcacta- 13448905  T
Q  314 attatcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttg 398  Q
    || |||||||||||   |||||||||||||||||||||  | ||||||||||||||| ||||||||||||||| |||||||||||    
T  13448904 atcatcaacaacttcagtgaacttgatggagaagagtgcatacaacactacgagaaagccacgggtcacaaggtttggcatcttg 13448820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 394
Target Start/End: Complemental strand, 13455505 - 13455295
Alignment:
Q  184 tgattcggattcaagttcgtatgtcgttccaaattttcctcatcgtatcaccatgtgcagtaaaccgccaaaggttctcagcaaattcataggattgatg 283  Q
    |||||||||||||||| | | ||| ||||||||||||||||||| ||||||| | ||    |||||||||||| |  ||| |  |||| ||| |   |||    
T  13455505 tgattcggattcaagtacctttgttgttccaaattttcctcatcatatcaccttatgtgaaaaaccgccaaagttaatcatcccattcctagaaacaatg 13455406  T
Q  284 cttgatacagtgttcaaaagtacaggctacattatcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcaca 383  Q
    ||||| ||| | || ||||||| ||     || |||||||||||   |||| ||||||||||||||||  ||||||||||||| ||||| || |||||||    
T  13455405 cttgagacaatatttaaaagtaaagcacttatcatcaacaacttcagtgaatttgatggagaagagtgcatccaacactacgaaaaaacaacaggtcaca 13455306  T
Q  384 aggcttggcat 394  Q
    ||| |||||||    
T  13455305 aggtttggcat 13455295  T

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Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 209 - 398
Target Start/End: Original strand, 12589699 - 12589888
Alignment:
Q  209 gttccaaattttcctcatcgtatcaccatgtgcagtaaaccgccaaaggttctcagcaaattcataggattgatgcttgatacagtgttcaaaagtacag 308  Q
    ||||||||||||||||||||||||||| | |||| ||| || |||||||   ||| | || |||| | |  |||||||||  || |  |||||||||  |    
T  12589699 gttccaaattttcctcatcgtatcaccttatgcactaatccaccaaaggcgttcaccgaagtcatggaaacgatgcttgaggcaatactcaaaagtaatg 12589798  T
Q  309 gctacattatcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttg 398  Q
    |   |||| | |||||||| | ||||||||||||  ||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  12589799 gactcattgttaacaacttcgctgaacttgatggccaagagtgtgtcaaacactatgagaaaaccacaggtcacaaggcttggcatcttg 12589888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 396
Target Start/End: Complemental strand, 48962836 - 48962753
Alignment:
Q  313 cattatcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatct 396  Q
    |||| |||||||||| | ||||||||| || ||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  48962836 cattgtcaacaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacgggtcacaaggcttggcatct 48962753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 398
Target Start/End: Complemental strand, 48958685 - 48958604
Alignment:
Q  317 atcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttg 398  Q
    |||||||||||  ||||||||||||| ||||||||  || |||||||| |||||| |||||||||||||| |||||||||||    
T  48958685 atcaacaacttcattgaacttgatggtgaagagtgcatcgaacactacaagaaaatcacgggtcacaaggtttggcatcttg 48958604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 398
Target Start/End: Original strand, 48911984 - 48912064
Alignment:
Q  318 tcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttg 398  Q
    ||||||| |||| ||||||||| || ||||||| | || |||||||||||||||| ||  ||||||| |||||||||||||    
T  48911984 tcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttg 48912064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 398
Target Start/End: Complemental strand, 48951727 - 48951691
Alignment:
Q  362 tacgagaaaaccacgggtcacaaggcttggcatcttg 398  Q
    |||||||||||||  ||||||||||||||||||||||    
T  48951727 tacgagaaaaccatcggtcacaaggcttggcatcttg 48951691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 398
Target Start/End: Original strand, 12641122 - 12641200
Alignment:
Q  320 aacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttg 398  Q
    ||||||||||||||||||||||| ||||| ||  || ||||||| |||||||||| |||| ||||||||||||||||||    
T  12641122 aacaactttgttgaacttgatggtgaagattgcatcaaacactatgagaaaaccatgggttacaaggcttggcatcttg 12641200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 6163 - 6230
Alignment:
Q  331 tgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttg 398  Q
    ||||||||| || |||||||   || |||||||||||||||| || |||||||| |||||||||||||    
T  6163 tgaacttgacggtgaagagtacatcgaacactacgagaaaactacaggtcacaaagcttggcatcttg 6230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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