View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18604_high_8 (Length: 308)
Name: NF18604_high_8
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18604_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 21 - 293
Target Start/End: Complemental strand, 46641450 - 46641178
Alignment:
| Q |
21 |
ctctagacacttggccttgtggctgaagtggctgtgctagaagaagaaatagttaggcttgaagagaaggttttacatttcaggcaggatttgcatcaag |
120 |
Q |
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| T |
46641450 |
ctctagacacttggacttgtggctgaagtggctgtgctagaagaagaaatagttaggcttgaagagaaggtcttacatttcaggcaggatttgcatcaag |
46641351 |
T |
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| Q |
121 |
aagcagtttacatgtcatcctccaagatgaaactggagcatttggaagcagcttctgtgaataatgcaaatccaaatgatagtacaaaattggatcatac |
220 |
Q |
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| T |
46641350 |
aagcagtttacatgtcatcctccaagatgaaactggagcatttggaagcagcttctgtgaataatgcaaatccaaatgatagtacaaaattggatcatac |
46641251 |
T |
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| Q |
221 |
tgcaacattttcaactaggcctaaaactactcttcctggtgagtaactagtccaatccaataatcaattttgt |
293 |
Q |
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| T |
46641250 |
tgcaacattttcaactaggcctaaaactactcttcctggtgagtaactagtccaatccaataatcaattttgt |
46641178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 6229173 - 6229294
Alignment:
| Q |
42 |
gctgaagtggctgtgctagaagaagaaatagttaggcttgaagagaaggttttacatttcaggcaggatttgcatcaagaagcagtttacatgtcatcct |
141 |
Q |
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||||||||||| || | ||||| ||||| ||| ||||||||||||| ||| | |||||||||||||||||| |||| ||||| || || ||||||| | |
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| T |
6229173 |
gctgaagtggcagttttggaagaggaaattgtttggcttgaagagaaagttgtgcatttcaggcaggatttgtatcatgaagctgtctatttgtcatctt |
6229272 |
T |
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| Q |
142 |
ccaagatgaaactggagcattt |
163 |
Q |
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| T |
6229273 |
ctaagaccaaattggagcattt |
6229294 |
T |
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