View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18604_low_1 (Length: 606)

Name: NF18604_low_1
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18604_low_1
NF18604_low_1
[»] chr4 (2 HSPs)
chr4 (16-593)||(38933322-38933899)
chr4 (16-589)||(12155490-12156063)
[»] chr2 (1 HSPs)
chr2 (348-449)||(14956470-14956571)


Alignment Details
Target: chr4 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 16 - 593
Target Start/End: Original strand, 38933322 - 38933899
Alignment:
Q  16 ctctcttcccaatatccttcatcctcttaaccaaaccatcaaaatcaaacaacctaagtaaaggcacaaaatctcccatattactcgccccaaacaacgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38933322 ctctcttcccaatatccttcatcctcttaaccaaaccatcaaaatcaaacaacctaagtaaaggcacaaaatctcccatattactcgccccaaacaacgg 38933421  T
Q  116 catcatctcatttatcatctctttaaacttcttcccttcctccgcatcaccagcaaccatttttgtcataatctcaaacgtcatatcggttagcctcgtc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38933422 catcatctcatttatcatctctttaaacttcttcccttcctccgcatcaccagcaaccatttttgtcataatctcaaacgtcatatcggttagcctcgtc 38933521  T
Q  216 ctcaactcaacacgagtgaacctctcactcgtgtctttagcaagttttattataagtttcaacgtctcactccttcgcgagccaacgaaggagttgagac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38933522 ctcaactcaacacgagtgaacctctcactcgtgtctttagcaagttttattataagtttcaacgtctcactccttcgcgagccaacgaaggagttgagac 38933621  T
Q  316 gttgcgttgagaggatgtcaagggcgatgatgcgacgtaggttacgccagtggtcgccatatggggcggagtctaagcttgtgtaattgtagaagagata 415  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38933622 gttgcgttgagaggatgtcaagggtgatgatgcgacgtaggttacgccagtggtcgccatatggggcggagtctaagcttgtgtaattgtagaagagata 38933721  T
Q  416 ttttccggtgaggaagcgaggtctgttcgataaatcaacgtcatgtttagttaaacattgttgaaatagggtttgggaggagataacaacaacacgactt 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38933722 ttttccggtgaggaagcgaggtctgttcgataaatcaacgtcatgttttgttaaacattgttgaagtagggtttgggaggagataacaacaacacgactt 38933821  T
Q  516 gaaccaaaccatagggtgaatattttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggtttatg 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38933822 gaaccaaaccatagggtgaatattttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggtttatg 38933899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 589
Target Start/End: Original strand, 12155490 - 12156063
Alignment:
Q  16 ctctcttcccaatatccttcatcctcttaaccaaaccatcaaaatcaaacaacctaagtaaaggcacaaaatctcccatattactcgccccaaacaacgg 115  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||||||    
T  12155490 ctctcttcccaatatccttcatcttcttaaccataccatcaaaatcaaacaacctaagtaaaggaacaaaatctcccttattattcgccccgaacaacgg 12155589  T
Q  116 catcatctcatttatcatctctttaaacttcttcccttcctccgcatcaccagcaaccatttttgtcataatctcaaacgtcatatcggttagcctcgtc 215  Q
    |||||||||   || ||||||||||||||| ||   |||| | ||||||||| ||||||||   |||||| | |||||| ||||||||||||||||||||    
T  12155590 catcatctccgataccatctctttaaactttttaaattccgcggcatcaccaacaaccattgccgtcatattatcaaacatcatatcggttagcctcgtc 12155689  T
Q  216 ctcaactcaacacgagtgaacctctcactcgtgtctttagcaagttttattataagtttcaacgtctcactccttcgcgagccaacgaaggagttgagac 315  Q
    || | |||||| || || ||||  |||| || |||     | || ||| ||||||| ||||||||| |  ||||||| |   |   ||||||||||||||    
T  12155690 cttagctcaactcgtgtaaacccatcacacgagtcgcggactagatttgttataagcttcaacgtccctttccttcgtgtttctctgaaggagttgagac 12155789  T
Q  316 gttgcgttgagaggatgtcaagggcgatgatgcgacgtaggttacgccagtggtcgccatatggggcggagtctaagcttgtgtaattgtagaagagata 415  Q
    ||||||||||||||||||| |||| ||||||   ||| ||||||||||| ||||| || || ||||||||||||||||| |||||||||||||| |||||    
T  12155790 gttgcgttgagaggatgtcgagggtgatgattttacgaaggttacgccaatggtctccgtaaggggcggagtctaagctagtgtaattgtagaaaagata 12155889  T
Q  416 ttttccggtgaggaagcgaggtctgttcgataaatcaacgtcatgtttagttaaacattgttgaaatagggtttgggaggagataacaacaacacgactt 515  Q
    |||||||||||||||  |||||| ||| |||||| ||||||| ||||| | ||| |||||||||| ||||| |||||||||||||||||||||||||| |    
T  12155890 ttttccggtgaggaaatgaggtcggtttgataaaacaacgtcgtgtttggctaagcattgttgaagtagggcttgggaggagataacaacaacacgacgt 12155989  T
Q  516 gaaccaaaccatagggtgaatattttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggtt 589  Q
    || || |||||||  | ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12155990 gacccgaaccataaagagaagatgttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggtt 12156063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 348 - 449
Target Start/End: Complemental strand, 14956571 - 14956470
Alignment:
Q  348 cgacgtaggttacgccagtggtcgccatatggggcggagtctaagcttgtgtaattgtagaagagatattttccggtgaggaagcgaggtctgttcgata 447  Q
    |||||||| |||||||| ||||| ||||| |  |||||| ||| | ||||||||||||| ||||  ||||||||||| ||||| || |||| ||||| ||    
T  14956571 cgacgtagattacgccaatggtccccataagaagcggagcctagggttgtgtaattgtaaaagatgtattttccggttaggaaacgtggtcggttcgcta 14956472  T
Q  448 aa 449  Q
    ||    
T  14956471 aa 14956470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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