View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18604_low_12 (Length: 290)
Name: NF18604_low_12
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18604_low_12 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 46641737 - 46641460
Alignment:
| Q |
13 |
taggcatgaagagaacattcacaaggcattggaaagagctttgaataggcctttgggagccttacctcgtcttcctccttatctccctccctatgttagt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46641737 |
taggcatgaagagaacattcacaaggcattggaaagagctttgaataggcctttgggagccttacctcgtcttcctccttatctccctccctatgttagt |
46641638 |
T |
|
| Q |
113 |
aaaatcactctccctttctagttttcctc-tttatctttgaggaaattaaatagtcgaatgtaatcacatatgtcggtgttggacataagacacaccttc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46641637 |
aaaatcactctccctttctagttttcctcttttatctttgaggaaattaaatagtcgaatgtaatcacatatgtcggtgtcggacataagacacaccttt |
46641538 |
T |
|
| Q |
212 |
aatattgttatagtcctacgtagnnnnnnnattacttattatattccagaaattgagtatttgagtgatgatttttatc |
290 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46641537 |
aatattgttatagtcctacgtag-ttttttattacttattatattccagaaattgagtatttgagtgatgatttttatc |
46641460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 6228944 - 6229043
Alignment:
| Q |
16 |
gcatgaagagaacattcacaaggcattggaaagagctttgaataggcctttgggagccttacctcgtcttcctccttatctccctccctatgttagtaaa |
115 |
Q |
| |
|
|||||| |||||||||| ||||||||| || |||||||| ||||| ||||| ||||| |||||||| ||||||||||| || ||||| |||||||||||| |
|
|
| T |
6228944 |
gcatgaggagaacattcgcaaggcattagagagagctttcaatagacctttaggagctttacctcgacttcctccttacctacctccttatgttagtaaa |
6229043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University