View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18604_low_13 (Length: 278)
Name: NF18604_low_13
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18604_low_13 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: scaffold0212 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 7033 - 7287
Alignment:
| Q |
9 |
agcaaaggaggaggtagcaatagcattagcaggagcagcaggaagcgtggcagtctcgcttgttctcgaatcagcgcactaggaatcgaagatttaagat |
108 |
Q |
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| T |
7033 |
agcaaaggaggaggtagcaatagcattagcaggagcagcaggaagcgtggcagtctcgcttgttctctaatcagcgcactaggaatcgaagatttaagat |
7132 |
T |
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| Q |
109 |
gatttccgacaagcgcacattcataggctgttagcaggataaggcgagaaagatattgaattaacatattttactttgactgattagctgctagaagtag |
208 |
Q |
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| T |
7133 |
gatttccgacaagcgcacattcataggctgttagcaggataaggcgagaaagatattgaattaacatattttactttgactgattagctgctagaagtag |
7232 |
T |
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| Q |
209 |
ccagttagtccaatgcgacgaacacgggcttggataagaaagaagggtcttgagt |
263 |
Q |
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| T |
7233 |
ccagttagtccaatgcgacgaacacgggcttggataagaaagaagggtcttgagt |
7287 |
T |
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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 3611682 - 3611597
Alignment:
| Q |
122 |
cgcacattcataggctgttagcaggataaggcgagaaagatattgaattaacatattttactttgactgattagctgctagaagta |
207 |
Q |
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| T |
3611682 |
cgcacattcatagactgttagcacgataaggcaagaaagatattgaattaacatattttactttgactgattagctgctagaagta |
3611597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 3611571 - 3611514
Alignment:
| Q |
122 |
cgcacattcataggctgttagcaggataaggcgagaaagatattgaattaacatattt |
179 |
Q |
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| T |
3611571 |
cgcacattcataggctgttagcaggataaggcgagaaagatattgaattaacatattt |
3611514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 3611569 - 3611601
Alignment:
| Q |
152 |
gcgagaaagatattgaattaacatattttactt |
184 |
Q |
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| T |
3611569 |
gcgagaaagatattgaattaacatattttactt |
3611601 |
T |
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