View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18604_low_14 (Length: 268)
Name: NF18604_low_14
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18604_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 32870416 - 32870176
Alignment:
| Q |
6 |
tatggtgctatagcacttacccactcaaccaaactaacgtgcttgtgagggttagctttatcaatcggtcgtcgtccagttattaactcaaggagcacga |
105 |
Q |
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| T |
32870416 |
tatggtggtataacacttacccactcaaccaaattaacgtccatgtgagggttagctttatcaatcgctactcgtccagttattaactcaaggagcacga |
32870317 |
T |
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| Q |
106 |
ctccataagagtaaacatctgatttatcagtaagttgtccagtataagcatattctggatccagatacctgtaagcagctattgataattcatgagctta |
205 |
Q |
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| T |
32870316 |
ctccataagagtaaacatcggatttatcagtaagtcgtccagtataagcatattctggatccagatacctgtaagcagctattgataattcatgagctta |
32870217 |
T |
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| Q |
206 |
atatatcataaatgatatgttgagaggaagggaataaattt |
246 |
Q |
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| T |
32870216 |
atatatcataaatgatatgttgagaggaagggaataaattt |
32870176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 32903733 - 32903541
Alignment:
| Q |
19 |
cacttacccactcaaccaaactaacgtgcttgtgagggttagctttatcaatcggtcgtcgtccagttattaactcaaggagcacgactccataagagta |
118 |
Q |
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| T |
32903733 |
cacttacccactcaaccaaactatcatccatgtaagtctgatctttatcaaccggtcgtcgtccagttaataactcaaggagcatgactccataagagaa |
32903634 |
T |
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| Q |
119 |
aacatctgatttatcagtaagttgtccagtataagcatattctggatccagatacctgtaagcagctattgataattcatgagcttaatatat |
211 |
Q |
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| T |
32903633 |
aacatctgatttatcggtaagttttccactagcagcatattctggagccagatacctgtagacagcaatagatagctcatgagcttgatatat |
32903541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 16394745 - 16394571
Alignment:
| Q |
19 |
cacttacccactcaaccaaactaacgtgcttgtgagggttagctttatcaatcggtcgtcgtccagttattaactcaaggagcacgactccataagagta |
118 |
Q |
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||||||||||||||||||||||| ||| | ||| || ||| ||||||||||||| |||||||||||||||||||||||| | ||||||||||||| | |
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| T |
16394745 |
cacttacccactcaaccaaactatcgttcatgtaagtcttatctttatcaatcggctttcgtccagttattaactcaaggagtatgactccataagagaa |
16394646 |
T |
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| Q |
119 |
aacatctgatttatcagtaagttgtccagtataagcatattctggatccagatacctgtaagcagctattgataa |
193 |
Q |
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| T |
16394645 |
aacatctgatttgtctgtaagttgtccactagagacatattctggagccatatacctgtaagcagcaattgataa |
16394571 |
T |
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