View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18604_low_3 (Length: 490)
Name: NF18604_low_3
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18604_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 23 - 474
Target Start/End: Original strand, 30244848 - 30245287
Alignment:
| Q |
23 |
atatgaataaattcgatatatataaagttcatcattaaaaatatatttatttatttgtgcttaggaccaatcaaaagataaggatcaccaaagtgaatac |
122 |
Q |
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| T |
30244848 |
atatgaataaattcgatacatataaagttcatcattaaaaatat--ttatttatctgtgcttaggaccaatcaaaagataaggatcaccaaagtgaatac |
30244945 |
T |
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| Q |
123 |
ggaagagtggaagaatgtggaggacaacggtacataaca-----acag-ttaaggacccccaagatattggactttcatataatggagccatagatcaat |
216 |
Q |
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| T |
30244946 |
ggaagagtggaagaatgtggaggacaacggtacataacagtgataaagattaaggacccccaagatattggactttcatataatggagccatagatcaat |
30245045 |
T |
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| Q |
217 |
ttgataaagatgtccttaaaaatcactccaaatatcaatagtggctgtcctttaggagtagaagttttaactcaacatcatcattgttctcatggtcatg |
316 |
Q |
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| T |
30245046 |
ttgataaagatgtacttaaaaatcactccaaatatcaatagtggctgtcctttaggagtagaagttttaactcaacatcatcattgttc------tcatg |
30245139 |
T |
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| Q |
317 |
gatgagaggctgatgttattggtgctgannnnnnnnnnnnnnnnnccacttaaaaacaacacaacacaacacgcctctattattttcttaaaaattatgg |
416 |
Q |
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| T |
30245140 |
gatgagagggtgatgtaattggtgctga-----ttttttttttttccacttaaaa-----acaacacaacacgcctctattattttcttaaaaattatgg |
30245229 |
T |
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| Q |
417 |
ccctctggacttgtcaatatcgagtgttcttggatgagtgaattctgtagtggatttt |
474 |
Q |
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| T |
30245230 |
ccctctggacttgtcaatatcgagtgttcttggatgagtgaattctgtagtggatttt |
30245287 |
T |
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