View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18604_low_4 (Length: 480)
Name: NF18604_low_4
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18604_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 188 - 463
Target Start/End: Complemental strand, 9334562 - 9334287
Alignment:
| Q |
188 |
cgtaaaataacgtagatatatggattttcagtgatcctctccatgttttactctaattccttgagagtatcattgaaaataaggtgcattcttactcttt |
287 |
Q |
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| T |
9334562 |
cgtaaaataaggtagatatatggattttcagtgatcctctccatgttttactctaattccttgagagtatcattgaaaataaggtgcattcttactcttt |
9334463 |
T |
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| Q |
288 |
tttgctgccaatgaacaaaactattcaaaaataattttcaagacttcaaacgctttcttgttgttttaaatgcgatgtttcgctcgagccaaatttacga |
387 |
Q |
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| T |
9334462 |
tttgctgccaatgaacaaagctattcaaaaataattttcaagacttcaaaagctttcttgttgttttaaatgcgatgtttcgctcgagccaaatttacca |
9334363 |
T |
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| Q |
388 |
cataatttttgctaaaagtaaaatctccaaattttgaattactcactcacaggtgatactccttgagaaatgttat |
463 |
Q |
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| T |
9334362 |
cataatttttgctgaaagtaaaatctccaaattttgaattactcactcacaagtgatactccttgagaaatgttat |
9334287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 9334718 - 9334557
Alignment:
| Q |
1 |
tcaaccaacaatagttgcattttttgtacaattaaagagtgcctaaagaacaactctctttgatttattatattctcctcctaatgtaaattgtaaagta |
100 |
Q |
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| T |
9334718 |
tcaaccaacaatagttgcatttttggtacaattaaagagtgcctaaagaacaactctctttgatttattatattctcctcctagtgtaaattgtaaagta |
9334619 |
T |
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| Q |
101 |
tccaattctctctttctttcttttttcctgtaggaaaaagatttggaagcaggacttgtaaa |
162 |
Q |
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| T |
9334618 |
tccaattctctctttctttcttttttcctgtaggaaaaagatttggaagcaggactcgtaaa |
9334557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 9941290 - 9941136
Alignment:
| Q |
60 |
ttgatttattatattctcctcctaatgtaaattgtaaagtatccaattctctctttctttcttttttcctgtaggaaaaagatttggaagcaggacttgt |
159 |
Q |
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| T |
9941290 |
ttgatttgttatattctcctcctaatgtaaattgtaatgtatccaattctctc--tctttcttt----ctgtagaaaaaagagtgggaagcagaagttgt |
9941197 |
T |
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| Q |
160 |
aaaggttacgagaccagcaaagccaagccgtaaaataacgtagatatatggattttcagtg |
220 |
Q |
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| T |
9941196 |
aaatgttacgggaacagcaaagccaagccgcagaataaggtagatatctgaattttcagtg |
9941136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 8207699 - 8207599
Alignment:
| Q |
120 |
cttttttcctgtaggaaaaagatttggaagcaggacttgtaaaggttacgagaccagcaaagccaagccgtaaaataacgtagatatatggattttcagt |
219 |
Q |
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||||||| |||||| ||||||| |||||||| | | ||||||| ||||| || |||||||||||||||| ||||||| |||||||| || |||||||| |
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| T |
8207699 |
ctttttttctgtagaaaaaagagttggaagcggaagttgtaaatgttaccggaacagcaaagccaagccgcaaaataaggtagatatctgagttttcagt |
8207600 |
T |
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| Q |
220 |
g |
220 |
Q |
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| T |
8207599 |
g |
8207599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 8207748 - 8207707
Alignment:
| Q |
59 |
tttgatttattatattctcctcctaatgtaaattgtaaagta |
100 |
Q |
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| T |
8207748 |
tttggtttattatattttcctcctaatgtaaatcgtaaagta |
8207707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 42362886 - 42362717
Alignment:
| Q |
59 |
tttgatttattatattctcctcctaatgtaaattgtaaagtatccaattc-------tctctttctttcttttttcct-gtaggaaaaagatttggaagc |
150 |
Q |
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||||||||||||||||||||||||||| |||| |||||| | |||||||| | | ||| ||| |||||| | |||| ||||||| |||||||| |
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| T |
42362886 |
tttgatttattatattctcctcctaatataaactgtaaattttccaattcctttttatttatttatttattttttttttgtagaaaaaagagttggaagc |
42362787 |
T |
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| Q |
151 |
aggacttgtaaaggttacgagaccagcaaagccaagccgtaaaataacgtagatatatggattttcagtg |
220 |
Q |
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| T |
42362786 |
ggaagttgtaaatgttacgggaatagcaaagccaagccgtaaaataaggtagatatctgagttttcagtg |
42362717 |
T |
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