View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18604_low_5 (Length: 467)

Name: NF18604_low_5
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18604_low_5
NF18604_low_5
[»] chr3 (14 HSPs)
chr3 (1-451)||(5299139-5299589)
chr3 (1-430)||(5268464-5268893)
chr3 (1-430)||(5250577-5251006)
chr3 (1-408)||(4388151-4388558)
chr3 (6-121)||(6519663-6519778)
chr3 (6-273)||(6479331-6479598)
chr3 (6-275)||(8455067-8455336)
chr3 (6-121)||(6553939-6554054)
chr3 (6-121)||(6736403-6736518)
chr3 (6-274)||(8590142-8590410)
chr3 (6-236)||(8568334-8568564)
chr3 (6-118)||(6448286-6448398)
chr3 (49-121)||(6947725-6947797)
chr3 (142-206)||(6259731-6259795)
[»] scaffold0425 (1 HSPs)
scaffold0425 (6-121)||(6978-7093)
[»] chr7 (1 HSPs)
chr7 (9-120)||(6572800-6572911)


Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 5299139 - 5299589
Alignment:
Q  1 tttccgaaacatagacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299139 tttccgaaacatagacccaggcttttagttcaaactgtttctgtatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctag 5299238  T
Q  101 acccaccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctc 200  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299239 acccactatgctgattattggtacacggtcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctc 5299338  T
Q  201 gattcatccaccaaagatgtacttggcaatctttttaaagctttccaaccgacttcaccttcattactagcacaaatttcttgttttaaccctaacatat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299339 gattcatccaccaaagatgtacttggcaatctttttaaagctttccaaccgacttcaccttcattactagcacaaatttcttgttttaaccctaacatat 5299438  T
Q  301 ccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtaaacgatgaaaagaagtcgaataccttgctagt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5299439 ccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtacacgatgaaaagaagtcgaataccttgctagt 5299538  T
Q  401 agaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaat 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299539 agaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaat 5299589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 5268464 - 5268893
Alignment:
Q  1 tttccgaaacatagacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctag 100  Q
    |||||||||||||||||||||||||  ||| ||| |  | ||  ||| | | || ||||||||| ||||||||||||||||| || ||||||||||| ||    
T  5268464 tttccgaaacatagacccaggctttatgtttaaaattctccttgatcctttggtcattgtacacgagttgagcaagggtggtcttacccattccaccgag 5268563  T
Q  101 acccaccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctc 200  Q
    |||||| |||||||||||||||||| | | |||    |||||||| || |||||||| ||| |||  ||||| |||||||||||||| |||||||||||     
T  5268564 acccactatgctgattattggtacatggttgcccttgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctg 5268663  T
Q  201 gattcatccaccaaagatgtacttggcaatctttttaaagctttccaaccgacttcaccttcattactagcacaaatttcttgttttaaccctaacatat 300  Q
    ||||||||||||||||||||| |||||||||| | ||| | ||||||||  ||| |||||||| |||||||||||   ||||||||||| || | |||||    
T  5268664 gattcatccaccaaagatgtagttggcaatctatctaagggtttccaactaactccaccttcactactagcacaagcgtcttgttttaatccaagcatat 5268763  T
Q  301 ccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtaaacgatgaaaagaagtcgaataccttgctagt 400  Q
     |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||| ||| || || |||| |||||||||||||||||||||    
T  5268764 gcttttgttttgcaagaaattctagcttctctagcaattctttgatcctagactcaaatggattagtgaaagacgaaatgaagtcgaataccttgctagt 5268863  T
Q  401 agaaggttgagaatcaactttcagcttctt 430  Q
    |||||||||||| |||| |||| |||||||    
T  5268864 agaaggttgagattcaagtttctgcttctt 5268893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 5250577 - 5251006
Alignment:
Q  1 tttccgaaacatagacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctag 100  Q
    |||| |||||||||||||| ||||| |||||||| || | ||||||| ||| ||  |||||| |||| |||||||| ||||| || ||||||||||| ||    
T  5250577 tttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacgcaagctgagcaagagtggtcttacccattccaccgag 5250676  T
Q  101 acccaccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctc 200  Q
    |||||| |||||||||||||||||| ||| ||||   | |||||| || |||||||| |   |||  ||||| |||||||||||||| ||||||||||||    
T  5250677 acccactatgctgattattggtacatgattgccactgtttatgtcagacagtaaaaaatcaattaactcctccttgtcaccatctctaccatatatgctc 5250776  T
Q  201 gattcatccaccaaagatgtacttggcaatctttttaaagctttccaaccgacttcaccttcattactagcacaaatttcttgttttaaccctaacatat 300  Q
    |||||||||||||||| |||| |||| ||||| | ||| | ||||||||  ||  |||||||| |||||||| ||   || ||||| || || | |||||    
T  5250777 gattcatccaccaaagctgtagttggaaatctatctaagggtttccaactaacgccaccttcactactagcaaaagcctcatgtttcaatccgagcatat 5250876  T
Q  301 ccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtaaacgatgaaaagaagtcgaataccttgctagt 400  Q
    ||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||| |||| ||| || |||||||||||||||||||||||||||||    
T  5250877 ccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggattagtgaaagatgaaaagaagtcgaataccttgctagt 5250976  T
Q  401 agaaggttgagaatcaactttcagcttctt 430  Q
    |||||||||||| ||| |||||||||||||    
T  5250977 agaaggttgagattcagctttcagcttctt 5251006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 4388558 - 4388151
Alignment:
Q  1 tttccgaaacatagacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctag 100  Q
    |||| ||||| |||||||| ||||| |||||||| || |  | |||| ||  || |||||||||||| |||||||| ||||| || ||||||||||| ||    
T  4388558 tttctgaaacgtagacccaagctttaagttcaaaatgctctttcatcctgcggtcattgtacacaagctgagcaagagtggtcttacccattccaccgag 4388459  T
Q  101 acccaccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctc 200  Q
    |||||| |||||||||||||||||  | | |||    |||||||| || |||||||| |||  ||  |||||||||||||| | ||| ||||||||||||    
T  4388458 acccactatgctgattattggtacttggttgccgctgtctatgtcagacagtaaaaagttgactaactcctctttgtcaccgtttctaccatatatgctc 4388359  T
Q  201 gattcatccaccaaagatgtacttggcaatctttttaaagctttccaaccgacttcaccttcattactagcacaaatttcttgttttaaccctaacatat 300  Q
    ||| ||||||||||||||||| |||| |||||| | || | |||||||| || | |||||||| ||||||||||  | |||||||| |  || | |||||    
T  4388358 gatccatccaccaaagatgtagttggaaatcttatcaagggtttccaactgagtccaccttcactactagcacaggtgtcttgtttcagtccgagcatat 4388259  T
Q  301 ccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtaaacgatgaaaagaagtcgaataccttgctagt 400  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||| | | || ||||||||||||| |||||||||||||||    
T  4388258 ccttttgcttcgcaagaaattctaacttctctagcaattctttgatcctagattcaaatggattaatgaaagatgaaaagaagttgaataccttgctagt 4388159  T
Q  401 agaaggtt 408  Q
    ||||||||    
T  4388158 agaaggtt 4388151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 6519778 - 6519663
Alignment:
Q  6 gaaacatagacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagaccca 105  Q
    |||||||||||||| ||||| |||||||| || ||||   ||||||||| |||||| ||| ||||||||||||||||||| |||||||| |||| |||||    
T  6519778 gaaacatagacccatgctttaagttcaaaatgcttctttgtcatgttgtcattgtagacatgttgagcaagggtggttttacccattcctcctaaaccca 6519679  T
Q  106 ccatgctgattattgg 121  Q
    | ||||||||||||||    
T  6519678 ctatgctgattattgg 6519663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 6 - 273
Target Start/End: Complemental strand, 6479598 - 6479331
Alignment:
Q  6 gaaacatagacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagaccca 105  Q
    |||||||||||||| ||||| |||||||| |||| ||  ||| ||||||| ||||||||||| | ||||||||||||||| ||||| || |||| ||| |    
T  6479598 gaaacatagacccatgctttaagttcaaaatgttcctctatcttgttgttgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccaa 6479499  T
Q  106 ccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattc 205  Q
    | ||||||||||| || ||  |    |||   ||  || | | ||||||||||||| | | ||| || |||||| ||||||||||||||||||| || ||    
T  6479498 ctatgctgattatcggaacctgggttccactgtcattgcctgcaagtaaaaatttgataagttcttccttgtcaacatctctgccatatatgctggactc 6479399  T
Q  206 atccaccaaagatgtacttggcaatctttttaaagctttccaaccgacttcaccttcattactagcac 273  Q
    |||||| | ||  |||  || |||||||||| ||| |||||||| ||||   ||||||||||||||||    
T  6479398 atccacgagagccgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcac 6479331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 6 - 275
Target Start/End: Original strand, 8455067 - 8455336
Alignment:
Q  6 gaaacatagacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagaccca 105  Q
    |||||||||||||| ||||| |||||||| || | ||  ||| |||||| |||||||||||| | ||||||||||||||| ||||| || |||| ||| |    
T  8455067 gaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatccctcctaaaccga 8455166  T
Q  106 ccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattc 205  Q
    | |||||||||||||| ||  | | ||||  |||  || | | ||||||||| ||| ||| ||  || || ||| ||||||  |||||||||||||| ||    
T  8455167 ctatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattaatttttccttatcaacatctcgaccatatatgctcgactc 8455266  T
Q  206 atccaccaaagatgtacttggcaatctttttaaagctttccaaccgacttcaccttcattactagcacaa 275  Q
    |||||| | || ||||  || ||| |||||| ||| |||||||| ||||   |||||||| |||||||||    
T  8455267 atccacgagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattcctagcacaa 8455336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 6554054 - 6553939
Alignment:
Q  6 gaaacatagacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagaccca 105  Q
    |||||||||||||| ||||| |||||||| || ||||  ||| ||||||  ||||||||||| | ||||||||||||||| ||||| || |||| |||||    
T  6554054 gaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccca 6553955  T
Q  106 ccatgctgattattgg 121  Q
    | ||||||||||||||    
T  6553954 ctatgctgattattgg 6553939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 6736403 - 6736518
Alignment:
Q  6 gaaacatagacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagaccca 105  Q
    |||||||||||||| ||||| |||||||| || ||||  ||| ||||||  ||||||||||| | ||||||||||||||| ||||| || |||| |||||    
T  6736403 gaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccca 6736502  T
Q  106 ccatgctgattattgg 121  Q
    | ||||| ||||||||    
T  6736503 ctatgctaattattgg 6736518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 8590142 - 8590410
Alignment:
Q  6 gaaacatagacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagaccca 105  Q
    |||||||||||||| ||||| || ||||| || |  |  ||| ||||||  ||||||||||| | ||||||||||||||| ||||| || |||| ||| |    
T  8590142 gaaacatagacccatgctttaagctcaaaatgctcttctatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccga 8590241  T
Q  106 ccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattc 205  Q
    | |||||||||||||| || || | ||||  |||  || | | ||||||||| ||| ||| ||  |  || ||| ||||||| |||||||||||||| ||    
T  8590242 ctatgctgattattggaacgcggttgccactatcattgcctgcaagtaaaaacttgattagttttttcttatcaacatctctaccatatatgctcgactc 8590341  T
Q  206 atccaccaaagatgtacttggcaatctttttaaagctttccaaccgacttcaccttcattactagcaca 274  Q
    |||||| | || ||||  || ||| |||||| ||| |||||||| ||||   ||||| |||||||||||    
T  8590342 atccacaagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcgttactagcaca 8590410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 8568564 - 8568334
Alignment:
Q  6 gaaacatagacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagaccca 105  Q
    ||||||| |||||| ||||| |||||||| || ||||  ||| ||| || |||||| |||||| ||||||||||||| || ||||| |||||||||||||    
T  8568564 gaaacatggacccaagctttaagttcaaattgcttctctatcttgtggtcattgtagacaagtcgagcaagggtggtcttacccatcccacctagaccca 8568465  T
Q  106 ccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattc 205  Q
    | || || ||||     ||| | | |||| ||||  ||||  |||| ||| | ||| ||| ||  | ||| ||| ||||||| ||||||||||  |||||    
T  8568464 caatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccatatatgcaagattc 8568365  T
Q  206 atccaccaaagatgtacttggcaatcttttt 236  Q
    |||||||||||| | | ||||||||||||||    
T  8568364 atccaccaaagacgcagttggcaatcttttt 8568334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 6448398 - 6448286
Alignment:
Q  6 gaaacatagacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagaccca 105  Q
    |||||||||||||| | ||| |||||||| || | ||  |||||||||| |||||||||||| | |||||  ||||| || ||||| ||||| |||||||    
T  6448398 gaaacatagacccaagatttaagttcaaaatgctcctttatcatgttgtgattgtacacaagcttagcaaaagtggtcttacccatcccacccagaccca 6448299  T
Q  106 ccatgctgattat 118  Q
    | |||||||||||    
T  6448298 ctatgctgattat 6448286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 6947725 - 6947797
Alignment:
Q  49 tgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattgg 121  Q
    |||||| |||||||||||| | ||||||||||||||| ||||| || |||| |||||| ||||||||||||||    
T  6947725 tgttgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgattattgg 6947797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 6259731 - 6259795
Alignment:
Q  142 tgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattca 206  Q
    |||| ||||||||||||||| ||| ||||||||| ||||  ||||| ||||||||| | ||||||    
T  6259731 tgtctgaaagtaaaaatttgattatttcctctttttcacgttctctaccatatatgatagattca 6259795  T

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Target: scaffold0425 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 7093 - 6978
Alignment:
Q  6 gaaacatagacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagaccca 105  Q
    |||||||||||||| ||||| |||||||| || ||||  ||| ||||||  ||||||||||| | ||||||||||||||| ||||| || |||| |||||    
T  7093 gaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtctttgtacacaagcttagcaagggtggttttccccatccctcctaaaccca 6994  T
Q  106 ccatgctgattattgg 121  Q
    | ||||||||||||||    
T  6993 ctatgctgattattgg 6978  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 6572911 - 6572800
Alignment:
Q  9 acatagacccaggcttttagttcaaactgtttctgcatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccacca 108  Q
    |||| |||||| ||||| || ||||||||||||| |||| | | || |||||| ||||| |||||||||||||| || ||||| ||||| | |||||| |    
T  6572911 acatggacccaagctttaaggtcaaactgtttctccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatcccacccaaacccacta 6572812  T
Q  109 tgctgattattg 120  Q
    ||||||||||||    
T  6572811 tgctgattattg 6572800  T

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