View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18604_low_6 (Length: 460)
Name: NF18604_low_6
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18604_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 4 - 444
Target Start/End: Complemental strand, 33160580 - 33160140
Alignment:
| Q |
4 |
ttaactaagaaattatatatatccattattatgaagacatgctacctagaaggatagtaattagtctattcacccttttgaaaggttattgttctattta |
103 |
Q |
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| T |
33160580 |
ttaactaagaaattatatccatccattattatgaagacatactacctagaaggatagcaattggtctatttacccttttgaagggttattgttctattta |
33160481 |
T |
|
| Q |
104 |
catgaattgaaacttgaaattgactcatgtaagaataaggtgcttggtgatgaagatttgtttttactttttggtttctttagagataaacaaacacaag |
203 |
Q |
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| T |
33160480 |
catgaattgaagcttgaaattgactcatgtaagaataaggtgcttggtgatgaagatttgtttttactttttggtttctttagagataaacaaacacaag |
33160381 |
T |
|
| Q |
204 |
acatattttcctattgtaagcaaatgggttgattccattaataatgtcattgattgatgatgaatttgaaactagtaacatgaattctccaatcatatgt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33160380 |
acatattttcctattgtaagcaaatgggttgattccattaataatgtcattgattgatgatgaatttgaaactagtaacatgaattctccaatcatatgt |
33160281 |
T |
|
| Q |
304 |
ctccaacactagagttgaggaaccaaaaaataaataaagggtcattttcagaaatatagatcatgacttgactttagtattggtctcttttgttgatcaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33160280 |
ctccaacactagagttgaggaaccaaaaaataaataaagggtcattttcagaaatatagatcatgacttgactttagtattggtctcttttgttgatcaa |
33160181 |
T |
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| Q |
404 |
gatgtctcatatagtttggtattgcgctttgtcatcttatt |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
33160180 |
gatgtctcatatagtttggtattgcgctttgtcatcttatt |
33160140 |
T |
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