View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18604_low_7 (Length: 458)
Name: NF18604_low_7
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18604_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 46 - 439
Target Start/End: Original strand, 45470738 - 45471131
Alignment:
| Q |
46 |
taactatattatgtaaacaaaagtgttaactctatatatttgagatttactctctttttattaataaaaatttaaggtgaggggataatgtcacagtata |
145 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
45470738 |
taactatattatgtaaacaaaagtgtttactctatatatttgagatttactctctttttattaataaaaatttagtgtgaggggataatgttacagtata |
45470837 |
T |
|
| Q |
146 |
cggttcagaggatttctatttacattccctagtaaaattttcttttacaaaaacaatacgcattttaaatctaacaaaaatgaagaagaaaatggttgtg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45470838 |
cggttcagaggatttctatttacattccctagtaaaatttacttttacaaaaacaatacgcattttaaatctaacaaaaatgaagaagaaaatggttgcg |
45470937 |
T |
|
| Q |
246 |
tggtgttgattatttttgtaaacgcaaaaagattaattgaatgatgtaaagcgctttcaataatagtacttgttataggacagaaatttatggcggatca |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45470938 |
tggtgttgattatttttgtaaacgcaaaaagattaattgaatgatgtaaagcgctttcaatgatagtatttgttataggacagaaatttatggcggatca |
45471037 |
T |
|
| Q |
346 |
ttaatgtgatggcaactaattgagagcgatcttcggtgatgatgtattattactaaaaagctttggtaaatatgtgctgactttttcgtcaaaa |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45471038 |
ttaatgtgatggcaactaattgagagcgatcttcggtgatgatgtattattactaaaaagctttggtaaatatgtgctgactttttcatcaaaa |
45471131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University