View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18604_low_9 (Length: 354)
Name: NF18604_low_9
Description: NF18604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18604_low_9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 354
Target Start/End: Complemental strand, 12541908 - 12541567
Alignment:
| Q |
12 |
aatataaaacaccaaagcagatatggttgatagagatagacnnnnnnnntatatcagaaatggaaggtgttgaagttgatcgaccattaaaaattcactt |
111 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12541908 |
aatataaaacaccaaagaagatatggttgatagagatagacaaaaaaa-tatatcagaaatggaaggtgttgaagttgatcgaccattaaaaattcactt |
12541810 |
T |
|
| Q |
112 |
cattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgtttgcatcacatggccaccaagtcacaatcatcaccactccctcc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12541809 |
cattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgtttgcatcacatggccaacaagtcacaatcatcaccactccctcc |
12541710 |
T |
|
| Q |
212 |
aatgttgatacccttaccaaatctctcccatccatcctcacccttcacactgtcgacttcccctacgaacacgtcgccctccctaaaggaattgaaccta |
311 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |||||| ||| |
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| T |
12541709 |
aatgttgaaacccttaccaaatctctcccatccatcctcacccttcacactgtcgacttcccctccgaacaagtcgacctccctaaaggcattgaatcta |
12541610 |
T |
|
| Q |
312 |
tgtcctccacaacagacaccatcacctctcgcaacattcacaa |
354 |
Q |
| |
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|||||||||| || ||| |||| |||||| | || |||||||| |
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| T |
12541609 |
tgtcctccaccactgaccccattacctcttggaaaattcacaa |
12541567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 67 - 215
Target Start/End: Complemental strand, 28386509 - 28386361
Alignment:
| Q |
67 |
agaaatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttg |
166 |
Q |
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||||||| | |||||||||||||| ||||||| ||| ||||||||||||| ||| |||||||||||||||||| || ||||||||||||||||||||| |
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| T |
28386509 |
agaaatgaatggtgttgaagttgaaagaccattgaaacttcacttcattccgtatccagcatctggacatatgatgccactttgtgatatagcaactttg |
28386410 |
T |
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| Q |
167 |
tttgcatcacatggccaccaagtcacaatcatcaccactccctccaatg |
215 |
Q |
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|||||||||| |||||| || |||||||||||||||||||||||||||| |
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| T |
28386409 |
tttgcatcacgtggccaacatgtcacaatcatcaccactccctccaatg |
28386361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 70 - 244
Target Start/End: Complemental strand, 13441378 - 13441204
Alignment:
| Q |
70 |
aatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgttt |
169 |
Q |
| |
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|||||||||||||||||| || |||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
13441378 |
aatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaactatgttt |
13441279 |
T |
|
| Q |
170 |
gcatcacatggccaccaagtcacaatcatcaccactccctccaatgttgatacccttaccaaatctctcccatcc |
244 |
Q |
| |
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||||| | |||||| ||||||||||||||||||||||||||||| | | | |||| |||||||||||| ||||| |
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| T |
13441278 |
gcatcccgtggccaacaagtcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctctcatcc |
13441204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 13462567 - 13462388
Alignment:
| Q |
65 |
tcagaaatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactt |
164 |
Q |
| |
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|||| |||||||||||| |||||||| | |||| | ||| | ||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| | |
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| T |
13462567 |
tcagcaatggaaggtgtagaagttgaacaaccactgaaactgcacttcattccatatctagcatctggacatatgatccctctttttgacatagcaatta |
13462468 |
T |
|
| Q |
165 |
tgtttgcatcacatggccaccaagtcacaatcatcaccactccctccaatgttgatacccttaccaaatctctcccatcc |
244 |
Q |
| |
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|||||||||| | |||||| || |||||| ||||||||||||||||||| || | ||||||||||||||||| ||||| |
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| T |
13462467 |
tgtttgcatcccgtggccaacacgtcacagtcatcaccactccctccaacgtccaatcccttaccaaatctctctcatcc |
13462388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 70 - 244
Target Start/End: Complemental strand, 13449541 - 13449367
Alignment:
| Q |
70 |
aatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgttt |
169 |
Q |
| |
|
||||||||||||||||||||| | |||||| ||| || |||||||||||| | | ||||||||||||||||||||||||| ||| ||||||||| ||||| |
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| T |
13449541 |
aatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttcttgcatctggacatatgatccctctttttgacatagcaactatgttt |
13449442 |
T |
|
| Q |
170 |
gcatcacatggccaccaagtcacaatcatcaccactccctccaatgttgatacccttaccaaatctctcccatcc |
244 |
Q |
| |
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||||| | |||||| ||||| ||| |||||||||||||| |||| | | ||||||||||||||||| ||||| |
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| T |
13449441 |
gcatcccgtggccagcaagtaacagtcatcaccactcccgccaacgcaaaatcccttaccaaatctctctcatcc |
13449367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 3416532 - 3416682
Alignment:
| Q |
65 |
tcagaaatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactt |
164 |
Q |
| |
|
|||| ||||| |||||||||||| || |||||| | ||||||||||||||||| ||| | |||||| | |||||||||||||||| |||||||||| || |
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| T |
3416532 |
tcagcaatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatcttgcatctagccatatgatccctctttctgatatagcagcta |
3416631 |
T |
|
| Q |
165 |
tgtttgcatcacatggccaccaagtcacaatcatcaccactccctccaatg |
215 |
Q |
| |
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|||||||||| |||||||| || |||||||||||||||||||||||||||| |
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| T |
3416632 |
tgtttgcatcccatggccaacatgtcacaatcatcaccactccctccaatg |
3416682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 70 - 213
Target Start/End: Complemental strand, 48959319 - 48959176
Alignment:
| Q |
70 |
aatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgttt |
169 |
Q |
| |
|
|||||||||||||||||||||| |||| | ||| ||||||||||||||||| |||| |||| ||||||||||| | ||||| ||||||||| ||||| |
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|
| T |
48959319 |
aatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctgttt |
48959220 |
T |
|
| Q |
170 |
gcatcacatggccaccaagtcacaatcatcaccactccctccaa |
213 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
48959219 |
gcatcccatggccaacaagtgacaatcatcaccactccctccaa |
48959176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 213
Target Start/End: Complemental strand, 48963462 - 48963318
Alignment:
| Q |
69 |
aaatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgtt |
168 |
Q |
| |
|
||||||| || ||||||||||| |||||||| ||| ||||||||||||||||| | ||| |||| |||||||| ||| | |||| |||||| || |||| |
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| T |
48963462 |
aaatggagggcgttgaagttgaacgaccattgaaacttcacttcattccatatcttgcacctggtcatatgattcctttgggtgacatagcagctctgtt |
48963363 |
T |
|
| Q |
169 |
tgcatcacatggccaccaagtcacaatcatcaccactccctccaa |
213 |
Q |
| |
|
||| || | |||||| ||||||||||||||||||||||||||||| |
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|
| T |
48963362 |
tgcgtcccgtggccaacaagtcacaatcatcaccactccctccaa |
48963318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 210
Target Start/End: Complemental strand, 48966507 - 48966367
Alignment:
| Q |
70 |
aatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgttt |
169 |
Q |
| |
|
|||||||||||||||| || | |||||| | ||| ||||||||||||||||| ||||| | || |||||||||||| | ||||| ||||||||| | ||| |
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|
| T |
48966507 |
aatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactatcttt |
48966408 |
T |
|
| Q |
170 |
gcatcacatggccaccaagtcacaatcatcaccactccctc |
210 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| |||||||| |
|
|
| T |
48966407 |
gcatctcatggccaacaagtcaccatcatcacaactccctc |
48966367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 70 - 213
Target Start/End: Original strand, 12482462 - 12482605
Alignment:
| Q |
70 |
aatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgttt |
169 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| ||||||||||||||| | |||| |||| |||||||||||| | || | || |||||| ||||| |
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|
| T |
12482462 |
aatggaaggtgttgaagttgaacgaccattgaaacttcacttcattccatttccagcacctgggcatatgatccctatgtgcaagattgcaactctgttt |
12482561 |
T |
|
| Q |
170 |
gcatcacatggccaccaagtcacaatcatcaccactccctccaa |
213 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||||| ||||| |
|
|
| T |
12482562 |
gcatcacgtggccatcatgtcacaatcatcaccactccttccaa |
12482605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 12589194 - 12589333
Alignment:
| Q |
70 |
aatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgttt |
169 |
Q |
| |
|
|||| |||| |||||| |||| | |||||||||| ||||||||||||||||| || || |||| |||||||||||||| ||||| || ||||| ||||| |
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|
| T |
12589194 |
aatgaaaggcgttgaaattgaacaaccattaaaacttcacttcattccatatctatcacctgggcatatgatccctctatgtgacattgcaaccctgttt |
12589293 |
T |
|
| Q |
170 |
gcatcacatggccaccaagtcacaatcatcaccactccct |
209 |
Q |
| |
|
||||| | |||||| ||||||||||||| ||||||||||| |
|
|
| T |
12589294 |
gcatcccgtggccaacaagtcacaatcaccaccactccct |
12589333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 12640495 - 12640631
Alignment:
| Q |
77 |
ggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgtttgcatcac |
176 |
Q |
| |
|
||||||| |||||| || ||||| ||| ||| | | |||||| | ||||| |||| |||||||| ||| | |||| |||||| ||||||||||||| | |
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|
| T |
12640495 |
ggtgttggagttgaacggccattgaaacttctcatacttccatttctagcacctggtcatatgattcctttgggtgacatagcagctttgtttgcatccc |
12640594 |
T |
|
| Q |
177 |
atggccaccaagtcacaatcatcaccactccctccaa |
213 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
12640595 |
atggccaacaagtcacgatcatcaccactccctccaa |
12640631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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