View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18605_high_11 (Length: 283)

Name: NF18605_high_11
Description: NF18605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18605_high_11
NF18605_high_11
[»] chr4 (13 HSPs)
chr4 (19-283)||(3749220-3749484)
chr4 (19-283)||(5858332-5858596)
chr4 (19-283)||(5565068-5565332)
chr4 (159-283)||(5583005-5583129)
chr4 (18-283)||(5886022-5886287)
chr4 (19-283)||(5605385-5605650)
chr4 (130-282)||(5852682-5852834)
chr4 (129-283)||(5570798-5570952)
chr4 (158-281)||(5553616-5553739)
chr4 (58-283)||(5894867-5895092)
chr4 (189-272)||(5847818-5847901)
chr4 (118-271)||(5559376-5559529)
chr4 (188-271)||(5538947-5539030)
[»] chr8 (2 HSPs)
chr8 (200-271)||(1485703-1485774)
chr8 (35-152)||(1483339-1483456)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 3749220 - 3749484
Alignment:
Q  19 aatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3749220 aatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaaca 3749319  T
Q  119 agtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaatt 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3749320 agtcaatagttgacagtgttccaatctgaaagattgcatgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaatt 3749419  T
Q  219 ggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttct 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3749420 ggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttct 3749484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 5858332 - 5858596
Alignment:
Q  19 aatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaaca 118  Q
    |||| |||| |||||||||||| ||| ||||||||| | |||||||||||||| | |||||||| ||||||  | ||| ||||||||| ||||  ||| |    
T  5858332 aatggtccagagaagtttgtgtcactcactctaattctatgaagagattcacttagtgagtagtttggaaatgaaccacggagattttcgttggaaaata 5858431  T
Q  119 agtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaatt 218  Q
    |||||||    |||| ||||||||||||||||||     |||||||||||||||  ||| ||||||  |||||||||||||| |||||||||||||||||    
T  5858432 agtcaatcacagacaatgttccaatctgaaagatcttctgtggaaatgtaccggataatgcacaaaatgcaagactgagggtagtcaagtttttaaaatt 5858531  T
Q  219 ggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttct 283  Q
     ||||||||||  || ||||| |||||||||| |||| |||||||||||||||||||||||||||    
T  5858532 tgcaaatgtttcaggaactggggatgaaaaatagttctcatcaagaataatgactgataggttct 5858596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 5565068 - 5565332
Alignment:
Q  19 aatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaaca 118  Q
    ||||||||| |||||||||||| ||| ||| ||||  | |||||||||||||| | |||||||| ||| ||  | ||||||||||| | |||     | |    
T  5565068 aatgctccagagaagtttgtgtaactcactataatgctatgaagagattcacttagtgagtagtctgggaatgaaccatggagattgtagttaaatgata 5565167  T
Q  119 agtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaatt 218  Q
    ||||||||   |||| |||| |||||||||| ||     |||||||||||||||||||  |||||    |||||||||||||||||| ||||||||||||    
T  5565168 agtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagggtggtcaggtttttaaaatt 5565267  T
Q  219 ggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttct 283  Q
    |||||||||||  |||||||| ||||||||||| ||  || ||||||||||||||||||||||||    
T  5565268 ggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagaataatgactgataggttct 5565332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 283
Target Start/End: Complemental strand, 5583129 - 5583005
Alignment:
Q  159 tggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttccca 258  Q
    ||||||| |||| |||||| |||||   ||||||||||||||||| || ||||| ||||||| ||||||||  |||||||| ||||||||||||||||||    
T  5583129 tggaaatttaccagtcaatccacaagatgcaagactgagggtggttaattttttgaaattggaaaatgtttgtggcactggggatgaaaaattgttccca 5583030  T
Q  259 tcaagaataatgactgataggttct 283  Q
    |||||||||||||||||||||||||    
T  5583029 tcaagaataatgactgataggttct 5583005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 5886287 - 5886022
Alignment:
Q  18 aaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaac 117  Q
    |||||||||| ||||| |||||||||| ||||||||  | |||||| ||||||| | |||||| |  || |||||  ||||||||||   ||||| | |     
T  5886287 aaatgctccagagaagcttgtgttactcactctaatgctatgaagatattcactaagtgagtaatcagggaaaaaaacatggagattggggttgtcagat 5886188  T
Q  118 aagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaat 217  Q
    ||||||||| |||||||||||| ||| || |||||     ||||||||||| | |||||| | |||     |||| |||||||||| | |||||||||||    
T  5886187 aagtcaataattgacagtgttctaatttggaagatcttttgtggaaatgtatctgtcaatccgcaattttgaagattgagggtggttaggtttttaaaat 5886088  T
Q  218 tggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttct 283  Q
    ||||||||||||  |||||||| ||||||||||||||| |  ||||||||||||| ||||||||||    
T  5886087 tggcaaatgtttgtggcactggggatgaaaaattgttctcgccaagaataatgaccgataggttct 5886022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 5605385 - 5605650
Alignment:
Q  19 aatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaag-ccatggagatttttgttgttaaac 117  Q
    ||||||||| ||||| ||||||||||  |  ||||  | |||||||||||||| | |||||||| |||||||||  ||||| || ||   ||||| | |     
T  5605385 aatgctccagagaagcttgtgttactcgccataatgctgtgaagagattcactaagtgagtagtctggaaaaaaaaccatgaaggttagggttgtcagat 5605484  T
Q  118 aagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaat 217  Q
    |||||||||  ||||||||||| ||| ||||| ||     |||||||||| || |||||| |||||     |||| |||||||||| | |||||||||||    
T  5605485 aagtcaatatctgacagtgttctaatttgaaatatattttgtggaaatgttccagtcaatccacaatcgttaagattgagggtggttaggtttttaaaat 5605584  T
Q  218 tggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttct 283  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||||| |||||| |||| |||||    
T  5605585 tggcaaatgtttctggcactggggatgaaaaattgttcccatcaagaagaatgacagataagttct 5605650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 282
Target Start/End: Complemental strand, 5852834 - 5852682
Alignment:
Q  130 gacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttt 229  Q
    |||||||||||||||||||||||     ||||||||||||| |||||| |||||   | |||||| |||||||||| ||||| |||||| ||||||||||    
T  5852834 gacagtgttccaatctgaaagatcttctgtggaaatgtaccagtcaatccacaatctgaaagactaagggtggtcaggttttgaaaattagcaaatgttt 5852735  T
Q  230 tcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttc 282  Q
      || || || || ||||||||||||| |||||||||||||||||||||||||    
T  5852734 ctggaacgggggaagaaaaattgttcctatcaagaataatgactgataggttc 5852682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 283
Target Start/End: Complemental strand, 5570952 - 5570798
Alignment:
Q  129 tgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgtt 228  Q
    ||||| ||||||||| ||||||||     ||||||||||||| |||||| |||||   | ||||||||||||||| |  ||||||||||||| |||||||    
T  5570952 tgacaatgttccaatttgaaagatattttgtggaaatgtacctgtcaatccacaagatgaaagactgagggtggttagttttttaaaattggaaaatgtt 5570853  T
Q  229 ttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttct 283  Q
    |  |||||| | ||||| |||| ||||||||||||||||||||||||||||||||    
T  5570852 tctggcactagggatgagaaatagttcccatcaagaataatgactgataggttct 5570798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 281
Target Start/End: Original strand, 5553616 - 5553739
Alignment:
Q  158 gtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttccc 257  Q
    ||||||||||||| || ||| |||||   | |||||| |||||||||| ||||| |||||||||||||||||  || || || || |||||||||||||     
T  5553616 gtggaaatgtacctgttaatccacaagatgtaagactaagggtggtcaggttttgaaaattggcaaatgtttctggaacgggggaagaaaaattgttcct 5553715  T
Q  258 atcaagaataatgactgataggtt 281  Q
    ||||||||||||||| ||||||||    
T  5553716 atcaagaataatgaccgataggtt 5553739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 283
Target Start/End: Complemental strand, 5895092 - 5894867
Alignment:
Q  58 tgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaacaagtcaatagttgacagtgttccaatctgaaagattgcac 157  Q
    |||||||||||||| | |||||||| |||||||||  | ||||||||   ||||  | | |||||||||  ||||||||| | ||| || |||||         
T  5895092 tgaagagattcactaagtgagtagtctggaaaaaaaacttggagattggggttgccagataagtcaataactgacagtgtcctaatttggaagatctttt 5894993  T
Q  158 gtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttccc 257  Q
    |||||||||||||| ||||| ||||      |||| |||||||||| | |||||||||||||||||||||||  |||| ||  |||||||||||||| |     
T  5894992 gtggaaatgtaccgatcaatccacactttcgaagattgagggtggttaggtttttaaaattggcaaatgtttctggcaatgaggatgaaaaattgtttcg 5894893  T
Q  258 atcaagaataatgactgataggttct 283  Q
    || ||||||||||||||| |||||||    
T  5894892 ataaagaataatgactgacaggttct 5894867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 5847901 - 5847818
Alignment:
Q  189 aagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgac 272  Q
    |||| |||||||||| | |||||||||||||||||||||||  |||||||| |||||||| |||||| || |||||| ||||||    
T  5847901 aagattgagggtggttaggtttttaaaattggcaaatgtttgtggcactggggatgaaaagttgttctcaccaagaacaatgac 5847818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 271
Target Start/End: Original strand, 5559376 - 5559529
Alignment:
Q  118 aagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaat 217  Q
    |||||||||  ||||| ||||||||| || |||||   | ||||||||||| | ||||||  ||||   |||||||| ||||| ||||| ||| | ||||    
T  5559376 aagtcaataaatgacaatgttccaatttggaagatcttatgtggaaatgtatcagtcaatctacaagctgcaagactaagggttgtcaaatttctgaaat 5559475  T
Q  218 tggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatga 271  Q
    ||| ||||||||  ||||| || || ||||||||||| ||||||||||||||||    
T  5559476 tggaaaatgtttcaggcaccggggaagaaaaattgtttccatcaagaataatga 5559529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 5539030 - 5538947
Alignment:
Q  188 caagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatga 271  Q
    ||||||| ||||| ||||| ||| | ||||||| ||||||||  |||||||| || ||||||||||| ||||| ||||||||||    
T  5539030 caagactaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatga 5538947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 1485703 - 1485774
Alignment:
Q  200 tggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatga 271  Q
    |||||| |||||||||||||| ||||||||  || | ||| ||||||| |||||||  ||||||||||||||    
T  1485703 tggtcaggtttttaaaattggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatga 1485774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 1483339 - 1483456
Alignment:
Q  35 ttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaacaagtcaatagttgacag 134  Q
    |||||| ||| ||||||||| |  ||||||||||||| | |||||||| ||||||  | ||||| ||||  ||||||| | | ||||| |||  ||||||    
T  1483339 ttgtgtaactaactctaattctacgaagagattcactaagtgagtagtttggaaatgaaccatgaagatcgttgttgtaatataagtcgataaatgacag 1483438  T
Q  135 tgttccaatctgaaagat 152  Q
    || | |||||||||||||    
T  1483439 tgctgcaatctgaaagat 1483456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University