View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18605_high_2 (Length: 529)
Name: NF18605_high_2
Description: NF18605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18605_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 16 - 511
Target Start/End: Original strand, 40811229 - 40811722
Alignment:
| Q |
16 |
atcacaaacaatatatatagtacacgtgaatgttacggtttaaggtaccaaacatcaatactaactagtagtaaccagaagcaacaacaacaataattaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40811229 |
atcacaaacaatatatatagtacacgtgaatgttacggtttaaggtaccaaacatcaatactaactagtagtaaccagaagcaacaacaacaataat--- |
40811325 |
T |
|
| Q |
116 |
tagtactactacgtaacttaaaatttataaaaaa-ttaaatcacgcattctattttgctttgtacccagaaagaatccagcaaaaatgtagtaaaatgtt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
40811326 |
-agtactactacgtaacttaaaatttataaaaaaattaaatcacgcattctattttgctttgttctcagaaagaatccagcaaaaatgta---aaatgtt |
40811421 |
T |
|
| Q |
215 |
tttatgttgatttataatttagtggagttgtcaaacatgcagatgcaacaatgcatgtgcttgtggtgatggtagtggaaaatagatatatgatatgata |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40811422 |
tttatgttgatttataatttagtggagttgtcaaacatgcagatgcaacaatgcatgtgcctgtggtgatggtagtggaaaatagatatatgatatgata |
40811521 |
T |
|
| Q |
315 |
tgatatgaggtacggtaagcacaaggacccattaccactggtgcagagatctctgcttactcagtgttgtttgttggta--ctattatctctatgacttc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40811522 |
tgatatgaggtacggtaagcacaaggacccattaccactggtgcagagatctctgcttactcagtgttgtttgttggtactctattatctctatgacttc |
40811621 |
T |
|
| Q |
413 |
aaactctaatcaataatggtgtgtggaa---cttgatccttttcaatttttgataattgaacttgtaaaagtcactttggtcactcttcatagccacaca |
509 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40811622 |
aaactctaatcaataatggtgtgtggaacttcttgatccttttcaa-ttttgataattgaacttgtaaaagtcactttggtcactcttcatagccacaca |
40811720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University