View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18605_high_3 (Length: 455)
Name: NF18605_high_3
Description: NF18605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18605_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 115 - 442
Target Start/End: Original strand, 36581554 - 36581881
Alignment:
| Q |
115 |
ctcacagtatataataatatgctgtgtttttcaaggacacgagttatttgttgatgtacaaattatgttgattgtatggtctgtatcggttaaaatcttt |
214 |
Q |
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| T |
36581554 |
ctcacggtatataataatatgctgtgtttttcaaggacacgagttatttgttgatgtacaaattatgttgattgtatggtctgtatcggttaaaatcttt |
36581653 |
T |
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| Q |
215 |
gtttgaaataattttttcgaaggctcaaagtcaaattacatgtttaaaaacaggcatttggtttagtttttccttgagaagttgaatgattggtaggtct |
314 |
Q |
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| T |
36581654 |
gtttgaaataattttttcgaaggctcaaagtcaaattacatgtttaaaaacaggcatttggtttagtttttccttgagaagttgaatgattggtaggtct |
36581753 |
T |
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| Q |
315 |
cttacaggtaaaagaagattgaaggatttattggttcaaaaagataatcgcttttgtgctgattgtagtgctccagatcctaaatgggcgtaagtttatt |
414 |
Q |
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| T |
36581754 |
cttacaggtaaaagaagattgaaggatttattggttcaaaaagataatcgcttttgtgctgattgtagtgctccagatcccaaatgggcgtaagtttatt |
36581853 |
T |
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| Q |
415 |
cacataaccttttttgtttatggtcatg |
442 |
Q |
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| T |
36581854 |
cacacaaccttttttgtttatggtcatg |
36581881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 36581446 - 36581485
Alignment:
| Q |
13 |
aatataaggttggaatttgggaggcctgtatcaagtacgt |
52 |
Q |
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| T |
36581446 |
aatagaaggttggaatttgggaggcctgtattaagtacgt |
36581485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 288 - 411
Target Start/End: Complemental strand, 11340626 - 11340503
Alignment:
| Q |
288 |
ttgagaagttgaatgattggtaggtctcttacaggtaaaagaagattgaaggatttattggttcaaaaagataatcgcttttgtgctgattgtagtgctc |
387 |
Q |
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|||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||||||| ||| || |||||||| ||||| | ||||||| ||||| |
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| T |
11340626 |
ttgagaagttgaatgattggaaggtcttttacaggtagaagaagattgaaagatttattgcatcagaaggataatcgtgtttgttcggattgtaatgctc |
11340527 |
T |
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| Q |
388 |
cagatcctaaatgggcgtaagttt |
411 |
Q |
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| T |
11340526 |
cagatcctaaatgggcgtaggttt |
11340503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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