View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18605_high_4 (Length: 449)
Name: NF18605_high_4
Description: NF18605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18605_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 49 - 254
Target Start/End: Original strand, 10081337 - 10081542
Alignment:
| Q |
49 |
tctgaatttgaagtagtgaaacccttgaactaaacttgtccttttgatcatttaggttgtttgtttttaactgcattgttgtctgtttgaaattttgcag |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10081337 |
tctgaatttgaagtagtgaaacccttgaacaaaacttgtccttttgatcatttaggttgtttgtttttaactgcattgttgtctgtttgaaattttgcag |
10081436 |
T |
|
| Q |
149 |
acctaagcaagttttgacaatgtctgacaaaggaggaaagggtggttctctgttgagtaaaggtggtaatttttggacattctttgcccttcatcaaaag |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10081437 |
acctaagcaagttttgacaatgtctgacaaaggaggaaagggtggttctctgttgagtaaaggtggtaatttttggacattctttgcccttcatcaaaag |
10081536 |
T |
|
| Q |
249 |
tttaaa |
254 |
Q |
| |
|
|||||| |
|
|
| T |
10081537 |
tttaaa |
10081542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 290 - 429
Target Start/End: Original strand, 10081580 - 10081719
Alignment:
| Q |
290 |
ttgttggggttgatattttttgttagattgttatgttgggtttcatcatttagtttacttatgatgttgggaaattctgggtttgtctaatttctttata |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10081580 |
ttgttggggttgatattttttgttagattgttatgttgggtttcatcatttagtttacttatgatgttgggaaattctgggtttgtctaatttctttata |
10081679 |
T |
|
| Q |
390 |
aaaatgtttttgacatgaacctttgacaccggacacgaca |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10081680 |
aaaatgtttttgacatgaacctttgacaccggacacgaca |
10081719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University