View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18605_high_6 (Length: 382)
Name: NF18605_high_6
Description: NF18605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18605_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 40853656 - 40853385
Alignment:
| Q |
1 |
tgaatattaataattaactatgatgacgcatcaccggcaataattttagaaaacagcatgattgaatgtaatcaaattcgccagtgcgtgacaggtgtc- |
99 |
Q |
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| T |
40853656 |
tgaatattaataattaactatgatgacgcatcaccggcaataattttagaaaacagcatgattgaatgtaatcaaattcgccagtgcgtgacaggtgtca |
40853557 |
T |
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| Q |
100 |
gtgtcgaacaccgacatgtgacggtgacacac--gccttccaatcagtcagtgctccaaatacagagactatgaatcactcacacttacacatgcaccac |
197 |
Q |
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| T |
40853556 |
gtgtcgaacaccgacatgtgacggtgacacacacgccttccaatcagtcagtgctccaactacagagactatgaatcactcacacttacacatgcaccac |
40853457 |
T |
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| Q |
198 |
cactagacatgacacagacacgctaacacctatgattacttgagaaattaatatttatctgttagtcttcga |
269 |
Q |
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| T |
40853456 |
cactagacatgacacagacacgctaacacctatgattacttgagaaattaatatttatatgttcgtcttcga |
40853385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 269 - 366
Target Start/End: Complemental strand, 40853335 - 40853238
Alignment:
| Q |
269 |
aacaacggtgaaaacgatgacagtaatgcacctgatccacggggaagaaaatcacgtccaacgatactctctaacaccgacgattttccagaactctg |
366 |
Q |
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| T |
40853335 |
aacaatggtgaaaacgatgacagtaatgcacctgatccacggggaagaaaatcacgtccaacgatactctctaacaccgacgattttccagaactctg |
40853238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 11583830 - 11583766
Alignment:
| Q |
302 |
gatccacggggaagaaaatcacgtccaacgatactctctaacaccgacgattttccagaactctg |
366 |
Q |
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| T |
11583830 |
gatccacgtggtagaaaatcccttccaacaacactctctaacactgacgatttccctgaactctg |
11583766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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