View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18605_low_1 (Length: 586)

Name: NF18605_low_1
Description: NF18605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18605_low_1
NF18605_low_1
[»] chr7 (10 HSPs)
chr7 (120-472)||(16533496-16533848)
chr7 (120-472)||(16631814-16632166)
chr7 (1-233)||(3934466-3934698)
chr7 (1-213)||(42678988-42679200)
chr7 (235-468)||(8731972-8732205)
chr7 (389-581)||(3053594-3053786)
chr7 (1-93)||(16497278-16497370)
chr7 (86-223)||(19788627-19788764)
chr7 (96-233)||(21767346-21767483)
chr7 (1-65)||(8414930-8414994)
[»] chr4 (5 HSPs)
chr4 (1-233)||(42468849-42469081)
chr4 (246-581)||(45163526-45163861)
chr4 (235-319)||(13775754-13775838)
chr4 (1-55)||(45166761-45166815)
chr4 (76-151)||(8738981-8739056)
[»] chr8 (2 HSPs)
chr8 (1-233)||(4878862-4879094)
chr8 (57-149)||(36377742-36377835)
[»] chr5 (3 HSPs)
chr5 (246-581)||(37212655-37212990)
chr5 (10-182)||(1779908-1780084)
chr5 (57-147)||(11850467-11850558)
[»] chr2 (4 HSPs)
chr2 (235-468)||(42276334-42276567)
chr2 (57-149)||(31488698-31488791)
chr2 (68-110)||(29235824-29235866)
chr2 (1-43)||(34577023-34577065)
[»] scaffold1361 (1 HSPs)
scaffold1361 (235-468)||(1334-1567)
[»] chr1 (4 HSPs)
chr1 (235-468)||(10910506-10910739)
chr1 (389-581)||(2408553-2408745)
chr1 (1-55)||(2404267-2404321)
chr1 (65-131)||(29833634-29833700)
[»] scaffold0008 (1 HSPs)
scaffold0008 (246-581)||(89693-90028)
[»] chr3 (3 HSPs)
chr3 (389-580)||(18964785-18964976)
chr3 (235-319)||(4532439-4532523)
chr3 (7-55)||(8535307-8535355)


Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 120 - 472
Target Start/End: Original strand, 16533496 - 16533848
Alignment:
Q  120 cataactttgttgtatccttcaatggttccttcgtgactaaaatttctagtgacttgcattcatcgtttccttcaatgaattcatcgagtggtagaggtg 219  Q
    ||||||||| |||||||||||||||||||||| ||||||| || ||||||||||||| |||| || ||||||||||||||||||||||||||||||||||    
T  16533496 cataacttttttgtatccttcaatggttcctttgtgactagaagttctagtgacttgaattcctcttttccttcaatgaattcatcgagtggtagaggtg 16533595  T
Q  220 ccaaaatgattttatcctcattgtccttgttgagccaatgaagcttgtaccggtgtaggtgctcctttgtttgtagctttaaattttctaccatataatt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16533596 ccaaaatgattttatcctcattgtccttgttgagccaatgaagcttgtaccggtgtaggtgctcctttgtttgtagctttaaattttctaccatataatt 16533695  T
Q  320 tgatagaatattttcacaacttccactattgataatgatatcatagaccttaccttgtgaggtgttggaagtgtggaagatattgtgttttagatatgat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16533696 tgatagaatattttcacaacttccactattgataatgatatcatagaccttaccttgtgaggtgttggaagtgtggaagatattgtgttttagatatgat 16533795  T
Q  420 tcttctttatccgtggttgtttgtaagcttcttgtaactaccagtgattcacc 472  Q
    |||||||||| ||| |||||||||||||||||| || |||| |||||||||||    
T  16533796 tcttctttatacgttgttgtttgtaagcttcttctagctacaagtgattcacc 16533848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 120 - 472
Target Start/End: Complemental strand, 16632166 - 16631814
Alignment:
Q  120 cataactttgttgtatccttcaatggttccttcgtgactaaaatttctagtgacttgcattcatcgtttccttcaatgaattcatcgagtggtagaggtg 219  Q
    ||||||||| |||||||||||||||||||||| ||||||| || ||||||||||||| |||| || ||||||||||||||||||||||||||||||||||    
T  16632166 cataacttttttgtatccttcaatggttcctttgtgactagaagttctagtgacttgaattcctcttttccttcaatgaattcatcgagtggtagaggtg 16632067  T
Q  220 ccaaaatgattttatcctcattgtccttgttgagccaatgaagcttgtaccggtgtaggtgctcctttgtttgtagctttaaattttctaccatataatt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16632066 ccaaaatgattttatcctcattgtccttgttgagccaatgaagcttgtaccggtgtaggtgctcctttgtttgtagctttaaattttctaccatataatt 16631967  T
Q  320 tgatagaatattttcacaacttccactattgataatgatatcatagaccttaccttgtgaggtgttggaagtgtggaagatattgtgttttagatatgat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16631966 tgatagaatattttcacaacttccactattgataatgatatcatagaccttaccttgtgaggtgttggaagtgtggaagatattgtgttttagatatgat 16631867  T
Q  420 tcttctttatccgtggttgtttgtaagcttcttgtaactaccagtgattcacc 472  Q
    |||||||||| ||| |||||||||||||||||| || |||| |||||||||||    
T  16631866 tcttctttatacgttgttgtttgtaagcttcttctagctacaagtgattcacc 16631814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 3934698 - 3934466
Alignment:
Q  1 catcgccaaagtatggtgaaagatcagcaacattgaaagtagcatagactccataataatccaaggaaaaatccatactaacaacttcccaaggtggctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3934698 catcgccaaagtatggtgaaagatcagcaacattgaaagtagcagagacaccatagtaatccaaggaaaaatccatactaacaacttcccaaggtggctt 3934599  T
Q  101 aggaattggacgggacatacataactttgttgtatccttcaatggttccttcgtgactaaaatttctagtgacttgcattcatcgtttccttcaatgaat 200  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| || ||||||| ||||| |||| || |||||||||||||||    
T  3934598 aggaattggacgggacatatataactttgttgtttccttcaatggttcctttgtgactagaagttctagtaacttgaattcctcttttccttcaatgaat 3934499  T
Q  201 tcatcgagtggtagaggtgccaaaatgatttta 233  Q
    ||||  ||||||||| |||||||  ||||||||    
T  3934498 tcattaagtggtagacgtgccaacttgatttta 3934466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 42678988 - 42679200
Alignment:
Q  1 catcgccaaagtatggtgaaagatcagcaacattgaaagtagcatagactccataataatccaaggaaaaatccatactaacaacttcccaaggtggctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42678988 catcgccaaagtatggtgaaagatcagcaacattgaaagtagcagagactccatagtaatccaaggaaaaatccatactaacaacttcccaaggtggctt 42679087  T
Q  101 aggaattggacgggacatacataactttgttgtatccttcaatggttccttcgtgactaaaatttctagtgacttgcattcatcgtttccttcaatgaat 200  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| || || |||||||||| |||| || |||||||||||||||    
T  42679088 aggaattggacggaacatatataactttgttgtatccttcaatggttcctttgtgactagaagttatagtgacttgaattcctcttttccttcaatgaat 42679187  T
Q  201 tcatcgagtggta 213  Q
    |||| ||||||||    
T  42679188 tcattgagtggta 42679200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 235 - 468
Target Start/End: Original strand, 8731972 - 8732205
Alignment:
Q  235 cctcattgtccttgttgagccaatgaagcttgtaccggtgtaggtgctcctttgtttgtagctttaaattttctaccatataatttgatagaatattttc 334  Q
    ||||||| |||||||||||||| |||||||||||  |||||||| ||||||||||| |||| ||||| ||||||||||||||||| |||| || ||||||    
T  8731972 cctcattatccttgttgagccattgaagcttgtaagggtgtaggcgctcctttgttggtagatttaatttttctaccatataattggatacaacattttc 8732071  T
Q  335 acaacttccactattgataatgatatcatagaccttaccttgtgaggtgttggaagtgtggaagatattgtgttttagatatgattcttctttatccgtg 434  Q
    |||||||||||  |||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||     
T  8732072 acaacttccaccgttgacaatgatatcacagaccttaccttgtgaggtgttagaagtgtggaagatattatgttttagacatgattcttctttatctgtt 8732171  T
Q  435 gttgtttgtaagcttcttgtaactaccagtgatt 468  Q
    |||||||||||||||||| || |||| |||||||    
T  8732172 gttgtttgtaagcttcttctagctacaagtgatt 8732205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 389 - 581
Target Start/End: Complemental strand, 3053786 - 3053594
Alignment:
Q  389 agtgtggaagatattgtgttttagatatgattcttctttatccgtggttgtttgtaagcttcttgtaactaccagtgattcaccgcaattagcaagaaca 488  Q
    ||||||||||||||||||| ||||  ||| |||||||||  | || || || |||||||||||| ||||||  |||||||||||  ||| ||| ||||||    
T  3053786 agtgtggaagatattgtgtcttagccatggttcttctttgactgttgtggtgtgtaagcttcttctaactattagtgattcaccagaatcagcgagaaca 3053687  T
Q  489 ggctcttcgtcatatattggctcgcccatctcttcttgttctagtgcttcatgaatatcttcttcttcagaagcttcatgtatctcccctttg 581  Q
    ||||||||||||||| || ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  3053686 ggctcttcgtcatatgtttgctcgcccatctcttctagttctagcgcttcatgaatatcttcttcttcagatgcttcatgtatctcccctttg 3053594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 16497278 - 16497370
Alignment:
Q  1 catcgccaaagtatggtgaaagatcagcaacattgaaagtagcatagactccataataatccaaggaaaaatccatactaacaacttcccaag 93  Q
    |||||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||||||||||||||||||||||||||||||    
T  16497278 catcgccaaagtatggtgaaagatcagcaacattgaaagtataagagactccatagtaatccaaggaaaaatccatactaacaacttcccaag 16497370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 19788764 - 19788627
Alignment:
Q  86 ttcccaaggtggcttaggaattggacgggacatacataactttgttgtatccttcaatggttccttcgtgactaaaatttctagtgacttgcattcatcg 185  Q
    |||||||||||||||||||| ||||||   || ||||||||||||  ||||||| ||||||||||| |||  | ||| |||||||||||||||| ||||     
T  19788764 ttcccaaggtggcttaggaactggacgaagcagacataactttgtcttatccttgaatggttcctttgtgtgtgaaagttctagtgacttgcatccatct 19788665  T
Q  186 tttccttcaatgaattcatcgagtggtagaggtgccaa 223  Q
    ||||||||| |||||| || |||||||||| |||||||    
T  19788664 tttccttcattgaattgattgagtggtagacgtgccaa 19788627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 21767346 - 21767483
Alignment:
Q  96 ggcttaggaattggacgggacatacataactttgttgtatccttcaatggttccttcgtgactaaaatttctagtgacttgcattcatcgtttccttcaa 195  Q
    |||||||||||| |||| | |||  || |||||||| ||||| | ||||||||||| |||||||||||||| || | |||  | || || |||||||||     
T  21767346 ggcttaggaatttgacgaggcatgtattactttgttttatccataaatggttcctttgtgactaaaatttcaagcggcttaaagtcctcatttccttcat 21767445  T
Q  196 tgaattcatcgagtggtagaggtgccaaaatgatttta 233  Q
    ||||||||||||||||||||||||| ||  ||||||||    
T  21767446 tgaattcatcgagtggtagaggtgcaaacttgatttta 21767483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8414930 - 8414994
Alignment:
Q  1 catcgccaaagtatggtgaaagatcagcaacattgaaagtagcatagactccataataatccaag 65  Q
    |||| |||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||    
T  8414930 catcaccaaagtatggtgaaatatcagcaacattgaaggtagcatagactccatagtaatccaag 8414994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 42468849 - 42469081
Alignment:
Q  1 catcgccaaagtatggtgaaagatcagcaacattgaaagtagcatagactccataataatccaaggaaaaatccatactaacaacttcccaaggtggctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42468849 catcgccaaagtatggtgaaagatcagcaacattgaaagtagcagagacaccatagtaatccaaggaaaaatccatactaacaacttcccaaggtggctt 42468948  T
Q  101 aggaattggacgggacatacataactttgttgtatccttcaatggttccttcgtgactaaaatttctagtgacttgcattcatcgtttccttcaatgaat 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||| ||||| |||| || |||||||||||||||    
T  42468949 aggaattggacgggacatacataactttgttgtttccttcaatggttcctttgtgactagaagttctagtaacttgaattcctcttttccttcaatgaat 42469048  T
Q  201 tcatcgagtggtagaggtgccaaaatgatttta 233  Q
    ||||  ||||||||| |||||||  ||||||||    
T  42469049 tcattaagtggtagacgtgccaacttgatttta 42469081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 246 - 581
Target Start/End: Complemental strand, 45163861 - 45163526
Alignment:
Q  246 ttgttgagccaatgaagcttgtaccggtgtaggtgctcctttgtttgtagctttaaattttctaccatataatttgatagaatattttcacaacttccac 345  Q
    ||||||||||| || | ||||||  | ||| |||||||||||||  | | ||| || ||||| |||||||| || |||| || ||| ||||| |||||||    
T  45163861 ttgttgagccattgcaacttgtatggatgtgggtgctcctttgtcggcaacttcaatttttccaccatatagttggatacaacattctcacagcttccac 45163762  T
Q  346 tattgataatgatatcatagaccttaccttgtgaggtgttggaagtgtggaagatattgtgttttagatatgattcttctttatccgtggttgtttgtaa 445  Q
    |||  || |||| |||| | || || ||||| |||||      ||||||||||||||||||| ||||  ||| |||||||||  | || || || |||||    
T  45163761 tatcaatgatgacatcacaaactttgccttgcgaggttcatcgagtgtggaagatattgtgtcttagccatggttcttctttgactgttgtggtgtgtaa 45163662  T
Q  446 gcttcttgtaactaccagtgattcaccgcaattagcaagaacaggctcttcgtcatatattggctcgcccatctcttcttgttctagtgcttcatgaata 545  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45163661 gcttcttctaactaccagtgattcaccgcaataagcaagaacaggctcttcgtcatatattggctcgcccatctcttcttgttctagtgcttcatgaata 45163562  T
Q  546 tcttcttcttcagaagcttcatgtatctcccctttg 581  Q
    ||||||||||||||||||||||||||||||||||||    
T  45163561 tcttcttcttcagaagcttcatgtatctcccctttg 45163526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 13775838 - 13775754
Alignment:
Q  235 cctcattgtccttgttgagccaatgaagcttgtaccggtgtaggtgctcctttgtttgtagctttaaattttctaccatataatt 319  Q
    ||||||| |||||||||||||| |||||||||||  |||||||| ||||||||||| |||| ||||| |||||||||||||||||    
T  13775838 cctcattatccttgttgagccattgaagcttgtaagggtgtaggcgctcctttgttggtagatttaatttttctaccatataatt 13775754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 45166815 - 45166761
Alignment:
Q  1 catcgccaaagtatggtgaaagatcagcaacattgaaagtagcatagactccata 55  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  45166815 catcgccaaagtatggtgaaagatcagcaacattgaaggtagcagagactccata 45166761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 8739056 - 8738981
Alignment:
Q  76 tactaacaacttcccaaggtggcttaggaattggacgggacatacataactttgttgtatccttcaatggttcctt 151  Q
    |||||| || ||| |||||||||||||||| ||||||   || ||||||||||||| ||||||| ||| |||||||    
T  8739056 tactaataatttctcaaggtggcttaggaactggacgaagcagacataactttgttttatccttgaattgttcctt 8738981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 6e-88; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4879094 - 4878862
Alignment:
Q  1 catcgccaaagtatggtgaaagatcagcaacattgaaagtagcatagactccataataatccaaggaaaaatccatactaacaacttcccaaggtggctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4879094 catcgccaaagtatggtgaaagatcagcaacattgaaagtagcagagacaccatagtaatccaaggaaaaatccatactaacaacttcccaaggtggctt 4878995  T
Q  101 aggaattggacgggacatacataactttgttgtatccttcaatggttccttcgtgactaaaatttctagtgacttgcattcatcgtttccttcaatgaat 200  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| || ||||||| ||||| |||| || |||||||||||||||    
T  4878994 aggaattggacgggacatatataactttgttgtttccttcaatggttcctttgtgactagaagttctagtaacttgaattcctcttttccttcaatgaat 4878895  T
Q  201 tcatcgagtggtagaggtgccaaaatgatttta 233  Q
    ||||  ||||||||| |||||||  ||||||||    
T  4878894 tcattaagtggtagacgtgccaacttgatttta 4878862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 36377742 - 36377835
Alignment:
Q  57 taatccaagg-aaaaatccatactaacaacttcccaaggtggcttaggaattggacgggacatacataactttgttgtatccttcaatggttcc 149  Q
    |||||||||| ||||||| ||| ||||| ||||||||||||||||||||| ||||||   || ||||||||||||| ||||||| |||||||||    
T  36377742 taatccaagggaaaaatcaatagtaacatcttcccaaggtggcttaggaactggacgaagcagacataactttgttttatccttgaatggttcc 36377835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 246 - 581
Target Start/End: Complemental strand, 37212990 - 37212655
Alignment:
Q  246 ttgttgagccaatgaagcttgtaccggtgtaggtgctcctttgtttgtagctttaaattttctaccatataatttgatagaatattttcacaacttccac 345  Q
    ||||||||||| || | ||||||  | ||| |||||||||||||  | | ||| || ||||| |||||||| || |||| || ||| ||||| |||||||    
T  37212990 ttgttgagccattgcaacttgtatggatgtgggtgctcctttgtcggcaacttcaatttttccaccatatagttggatacaacattctcacagcttccac 37212891  T
Q  346 tattgataatgatatcatagaccttaccttgtgaggtgttggaagtgtggaagatattgtgttttagatatgattcttctttatccgtggttgtttgtaa 445  Q
    |||  || |||| |||| | || || ||||| ||||||  |  ||||||||||||||||||| ||||  ||| |||||||||  | || || || |||||    
T  37212890 tatcaatgatgacatcacaaactttgccttgcgaggtgcagcgagtgtggaagatattgtgtcttagccatggttcttctttgactgttgtggtgtgtaa 37212791  T
Q  446 gcttcttgtaactaccagtgattcaccgcaattagcaagaacaggctcttcgtcatatattggctcgcccatctcttcttgttctagtgcttcatgaata 545  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37212790 gcttcttctaactaccagtgattcaccgcaatcagcaagaacaggctcttcgtcatatattggctcgcccatctcttcttgttctagtgcttcatgaata 37212691  T
Q  546 tcttcttcttcagaagcttcatgtatctcccctttg 581  Q
    ||||||||||||||||||||||||||||||||||||    
T  37212690 tcttcttcttcagaagcttcatgtatctcccctttg 37212655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 1779908 - 1780084
Alignment:
Q  10 agtatggtgaaagatcagcaacattgaaag----tagcatagactccataataatccaaggaaaaatccatactaacaacttcccaaggtggcttaggaa 105  Q
    ||||||| |||| |||||||||||| || |    ||||| |||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  1779908 agtatggggaaaaatcagcaacattaaaggtacatagcagagactccatagtaatccagggaaaaatccatactaacaactacccaaggtggcttaggaa 1780007  T
Q  106 ttggacgggacatacataactttgttgtatccttcaatggttccttcgtgactaaaatttctagtgacttgcattca 182  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  1780008 ttggacgggacattcataactttgttgtatccttcaatggttccttcgcgactaaaagttctagtgacttgcattca 1780084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 11850467 - 11850558
Alignment:
Q  57 taatccaagg-aaaaatccatactaacaacttcccaaggtggcttaggaattggacgggacatacataactttgttgtatccttcaatggtt 147  Q
    |||||||||| ||||||| ||| ||||  ||||||||||||||||||||| ||||||   || |||||||||| || ||||||| |||||||    
T  11850467 taatccaagggaaaaatcaatattaacgtcttcccaaggtggcttaggaactggacgaagcagacataactttattttatccttgaatggtt 11850558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 7e-72; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 235 - 468
Target Start/End: Original strand, 42276334 - 42276567
Alignment:
Q  235 cctcattgtccttgttgagccaatgaagcttgtaccggtgtaggtgctcctttgtttgtagctttaaattttctaccatataatttgatagaatattttc 334  Q
    ||||||| |||||||||||||  ||||||||||   |||||||| ||||||||||| |||| ||||| ||||||||||||||||| |||| || ||||||    
T  42276334 cctcattatccttgttgagccgttgaagcttgtgagggtgtaggcgctcctttgttggtagatttaatttttctaccatataattggatacaacattttc 42276433  T
Q  335 acaacttccactattgataatgatatcatagaccttaccttgtgaggtgttggaagtgtggaagatattgtgttttagatatgattcttctttatccgtg 434  Q
    |||||||||||  |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||     
T  42276434 acaacttccaccgttgacaatgatatcacagaccttaccttgtgaggtgttggaagtgtggaagatattatgttttagacatgattcttctttatctgtt 42276533  T
Q  435 gttgtttgtaagcttcttgtaactaccagtgatt 468  Q
    |||||||||||||||||| || |||| |||||||    
T  42276534 gttgtttgtaagcttcttctagctacaagtgatt 42276567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 31488791 - 31488698
Alignment:
Q  57 taatccaagg-aaaaatccatactaacaacttcccaaggtggcttaggaattggacgggacatacataactttgttgtatccttcaatggttcc 149  Q
    |||||||||| ||||||| ||| ||||| ||||||||||||||||||||| ||||||   || ||||||||||||| ||||||| |||||||||    
T  31488791 taatccaagggaaaaatcaatagtaacatcttcccaaggtggcttaggaactggacgaagcagacataactttgttttatccttgaatggttcc 31488698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 29235866 - 29235824
Alignment:
Q  68 aaaatccatactaacaacttcccaaggtggcttaggaattgga 110  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  29235866 aaaatccatactaacatcttcccaaggtgccttaggaattgga 29235824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34577023 - 34577065
Alignment:
Q  1 catcgccaaagtatggtgaaagatcagcaacattgaaagtagc 43  Q
    ||||||||||||||||||||||||||| ||||||||| |||||    
T  34577023 catcgccaaagtatggtgaaagatcagtaacattgaaggtagc 34577065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 235 - 468
Target Start/End: Complemental strand, 1567 - 1334
Alignment:
Q  235 cctcattgtccttgttgagccaatgaagcttgtaccggtgtaggtgctcctttgtttgtagctttaaattttctaccatataatttgatagaatattttc 334  Q
    ||||||| |||||||||||||| |||||||||||  |||||||| ||||||||||| |||| ||||| ||||||||||||||||| |||| || ||||||    
T  1567 cctcattatccttgttgagccattgaagcttgtaagggtgtaggcgctcctttgttggtagatttaatttttctaccatataattggatacaacattttc 1468  T
Q  335 acaacttccactattgataatgatatcatagaccttaccttgtgaggtgttggaagtgtggaagatattgtgttttagatatgattcttctttatccgtg 434  Q
    |||||||||||  |||| |||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||| |||||||||||||||  ||     
T  1467 acaacttccaccgttgacaatgatatcacagaccttaccttgtgaggtttttgaagtgtggaagatattatgttttagacatgattcttctttatttgtt 1368  T
Q  435 gttgtttgtaagcttcttgtaactaccagtgatt 468  Q
    |||||||||||||||||| || |||| |||||||    
T  1367 gttgtttgtaagcttcttctagctacaagtgatt 1334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 235 - 468
Target Start/End: Complemental strand, 10910739 - 10910506
Alignment:
Q  235 cctcattgtccttgttgagccaatgaagcttgtaccggtgtaggtgctcctttgtttgtagctttaaattttctaccatataatttgatagaatattttc 334  Q
    ||||||| |||||||||||||| |||||||||||  |||||||| ||||||||||| |||| ||||| ||||||||||||||||| |||| || ||||||    
T  10910739 cctcattatccttgttgagccattgaagcttgtaagggtgtaggcgctcctttgttggtagatttaatttttctaccatataattggatacaacattttc 10910640  T
Q  335 acaacttccactattgataatgatatcatagaccttaccttgtgaggtgttggaagtgtggaagatattgtgttttagatatgattcttctttatccgtg 434  Q
    |||||||||||  |||| |||||||||| | |||||||||||||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||| ||     
T  10910639 acaacttccaccgttgacaatgatatcacaaaccttaccttgtgaggtgttagaagtgtggaagacattatgttttagacatgattcttctttatctgtt 10910540  T
Q  435 gttgtttgtaagcttcttgtaactaccagtgatt 468  Q
    |||||||||||||||||| || |||| |||||||    
T  10910539 gttgtttgtaagcttcttctagctacaagtgatt 10910506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 389 - 581
Target Start/End: Original strand, 2408553 - 2408745
Alignment:
Q  389 agtgtggaagatattgtgttttagatatgattcttctttatccgtggttgtttgtaagcttcttgtaactaccagtgattcaccgcaattagcaagaaca 488  Q
    ||||||||||||||||||| ||||  ||| |||||||||  |  | || || |||||||||||| ||||||| |||||||||| ||||| ||||||||||    
T  2408553 agtgtggaagatattgtgtcttagccatggttcttctttgactattgtggtgtgtaagcttcttctaactactagtgattcactgcaatcagcaagaaca 2408652  T
Q  489 ggctcttcgtcatatattggctcgcccatctcttcttgttctagtgcttcatgaatatcttcttcttcagaagcttcatgtatctcccctttg 581  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2408653 gactcttcgtcatatattggctcgcccatctcttcttgttctagtgcttcatgaatatcttcttcttcagaagcttcatgtatctcccctttg 2408745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2404267 - 2404321
Alignment:
Q  1 catcgccaaagtatggtgaaagatcagcaacattgaaagtagcatagactccata 55  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  2404267 catcgccaaagtatggtgaaagatcagcaacattgaaggtagcagagactccata 2404321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 29833634 - 29833700
Alignment:
Q  65 ggaaaaatccatactaacaacttcccaaggtggcttaggaattggacgggacatacataactttgtt 131  Q
    ||||||||| ||| ||||| ||| |||||||||||||||||||||||| | |||| |||||||||||    
T  29833634 ggaaaaatcaatagtaacatctttccaaggtggcttaggaattggacgaggcatatataactttgtt 29833700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 246 - 581
Target Start/End: Complemental strand, 90028 - 89693
Alignment:
Q  246 ttgttgagccaatgaagcttgtaccggtgtaggtgctcctttgtttgtagctttaaattttctaccatataatttgatagaatattttcacaacttccac 345  Q
    ||||||||||| || | ||||||  | ||| |||||||||||||  | | ||| || ||||| |||||||| || |||| || ||| ||||| |||||||    
T  90028 ttgttgagccattgcaacttgtatggatgtgggtgctcctttgtcggcaacttcaatttttccaccatatagttggatacaacattctcacagcttccac 89929  T
Q  346 tattgataatgatatcatagaccttaccttgtgaggtgttggaagtgtggaagatattgtgttttagatatgattcttctttatccgtggttgtttgtaa 445  Q
    |||  || |||| |||| | || || ||||| ||||||     ||||||||||||||||||| ||||  ||| |||||||||  | || || || || ||    
T  89928 tatcaatgatgacatcacaaactttgccttgcgaggtgcatcgagtgtggaagatattgtgtcttagccatggttcttctttgactgttgtggtgtggaa 89829  T
Q  446 gcttcttgtaactaccagtgattcaccgcaattagcaagaacaggctcttcgtcatatattggctcgcccatctcttcttgttctagtgcttcatgaata 545  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||| || |    
T  89828 gcttcttctaactaccagtgattcaccgcaatcagcaagaacaggctcttcgtcatatattggctcgcccatctcttcttattctagcacttcataaaca 89729  T
Q  546 tcttcttcttcagaagcttcatgtatctcccctttg 581  Q
    ||||||| || |||||||||||||||||||||||||    
T  89728 tcttcttgtttagaagcttcatgtatctcccctttg 89693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 6e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 389 - 580
Target Start/End: Original strand, 18964785 - 18964976
Alignment:
Q  389 agtgtggaagatattgtgttttagatatgattcttctttatccgtggttgtttgtaagcttcttgtaactaccagtgattcaccgcaattagcaagaaca 488  Q
    ||||||||||||||| ||| ||||  ||| |||||||||    || || || |||||||||||| ||||||  |||||||||||||||| ||||||||||    
T  18964785 agtgtggaagatattatgtcttagccatggttcttctttgaatgttgtggtgtgtaagcttcttctaactattagtgattcaccgcaatcagcaagaaca 18964884  T
Q  489 ggctcttcgtcatatattggctcgcccatctcttcttgttctagtgcttcatgaatatcttcttcttcagaagcttcatgtatctccccttt 580  Q
      || ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18964885 aacttttcgtcatatattggctcgcccatctcttcttgttttagcgcttcatgaatatcttcttcttcagaagcttcatgtatctccccttt 18964976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 4532523 - 4532439
Alignment:
Q  235 cctcattgtccttgttgagccaatgaagcttgtaccggtgtaggtgctcctttgtttgtagctttaaattttctaccatataatt 319  Q
    ||||||| |||||||||||||| |||||||||||  |||||||| ||||||||||| |||| ||||| |||||||||||||||||    
T  4532523 cctcattatccttgttgagccattgaagcttgtaagggtgtaggcgctcctttgttggtagatttaatttttctaccatataatt 4532439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 8535355 - 8535307
Alignment:
Q  7 caaagtatggtgaaagatcagcaacattgaaagtagcatagactccata 55  Q
    |||| ||||||||||||||| ||||||| || |||||| ||||||||||    
T  8535355 caaaatatggtgaaagatcaacaacattaaaggtagcagagactccata 8535307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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