View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18605_low_13 (Length: 288)
Name: NF18605_low_13
Description: NF18605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18605_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 940920 - 940650
Alignment:
| Q |
1 |
ctggaaacttcaagaatccatacggattttttggattatcgggtggccttggatcctcatcttgtttaccgtctgaaaacaacgaaccatattcgatatt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
940920 |
ctggaaacttcaagaatccataaggattttttggattatcgggcggccttggatcctcgtcttgtttaccgtctgaaaacaacgaaccatattcgatatt |
940821 |
T |
|
| Q |
101 |
tggatcttctccatcgtcaaaagggtctagccatggattgttctttttggcatttacgcgaagatttagtcttctagttgaattgtaacaatgtgatgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
940820 |
tggatcttctccatcgtcaaaagggtctagccatggattgttctttttggcatttacgcgaagatttagtcttctagttgaattgtaacaatgtgatgga |
940721 |
T |
|
| Q |
201 |
tggtctaatgatgttaacaatgaaacattggttggataagttgaaggaatggaaaatgtgtttgtagtgaa |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
940720 |
tggtctaatgatgttaacaatgaaacattggttggataagttgaaggaatggaaaatgtgtttgtagtgaa |
940650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University