View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18605_low_17 (Length: 232)
Name: NF18605_low_17
Description: NF18605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18605_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 2555842 - 2555637
Alignment:
| Q |
17 |
atgatactccatgaaggaaaataacctaaaacttgtcaacaactctgcaataaataaagatgaacaaccaatgtttat------ttactcaactgaaaaa |
110 |
Q |
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| T |
2555842 |
atgatactccatgaaggaaaataacctaaaacttgtcaacaattctgcaataaataaagatgaacaaccaatgtttatagttatttactcaactgaaaaa |
2555743 |
T |
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| Q |
111 |
cagtgaaaattgcaagaggttagaacaaacgtagtagttgaaggatgaaaacaaaataagaataaaatcatgtaataaaaacttgttggatcaagatggt |
210 |
Q |
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| T |
2555742 |
ctgtgaaaattgcaagaggttagaacaaacgtagtagttgaaggatgcaaacaaaataagaataaaatcatgtaataaaaacttgttggatcaagatggt |
2555643 |
T |
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| Q |
211 |
aaagag |
216 |
Q |
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|||||| |
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| T |
2555642 |
aaagag |
2555637 |
T |
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