View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18605_low_18 (Length: 225)

Name: NF18605_low_18
Description: NF18605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18605_low_18
NF18605_low_18
[»] chr7 (20 HSPs)
chr7 (16-207)||(1560515-1560706)
chr7 (16-207)||(6594408-6594598)
chr7 (16-207)||(6592190-6592380)
chr7 (14-207)||(18392044-18392236)
chr7 (16-207)||(32060172-32060362)
chr7 (16-207)||(18388610-18388800)
chr7 (16-207)||(20344025-20344213)
chr7 (100-207)||(24789969-24790074)
chr7 (46-207)||(39731497-39731656)
chr7 (16-199)||(43504009-43504186)
chr7 (155-207)||(35854042-35854094)
chr7 (155-207)||(25766948-25767000)
chr7 (19-104)||(24790230-24790312)
chr7 (49-207)||(25615981-25616137)
chr7 (163-207)||(23555168-23555212)
chr7 (163-207)||(29991181-29991225)
chr7 (163-207)||(34310712-34310756)
chr7 (155-207)||(48408932-48408984)
chr7 (155-207)||(2390410-2390461)
chr7 (155-207)||(22270101-22270151)
[»] chr5 (24 HSPs)
chr5 (16-207)||(40380219-40380409)
chr5 (16-207)||(40382430-40382620)
chr5 (16-207)||(10593386-10593576)
chr5 (16-207)||(25078249-25078439)
chr5 (16-207)||(25136218-25136408)
chr5 (16-207)||(16544537-16544729)
chr5 (16-207)||(16546759-16546951)
chr5 (16-207)||(29720492-29720679)
chr5 (16-207)||(29751012-29751200)
chr5 (17-207)||(29722652-29722838)
chr5 (16-207)||(22536145-22536330)
chr5 (45-207)||(9789104-9789264)
chr5 (45-207)||(18441524-18441688)
chr5 (46-207)||(16409603-16409764)
chr5 (66-207)||(26178010-26178150)
chr5 (113-207)||(26170890-26170983)
chr5 (163-207)||(37439269-37439313)
chr5 (58-207)||(13239879-13240025)
chr5 (163-207)||(13343188-13343232)
chr5 (163-207)||(25412888-25412932)
chr5 (66-207)||(30182716-30182852)
chr5 (170-199)||(213601-213630)
chr5 (155-207)||(28278444-28278494)
chr5 (163-199)||(36074039-36074075)
[»] chr2 (13 HSPs)
chr2 (16-207)||(13655879-13656072)
chr2 (16-207)||(12647236-12647426)
chr2 (16-207)||(6266819-6267005)
chr2 (46-207)||(30833474-30833633)
chr2 (46-207)||(4484211-4484370)
chr2 (46-207)||(32289692-32289853)
chr2 (49-207)||(36987961-36988116)
chr2 (47-207)||(4503017-4503173)
chr2 (163-208)||(36205661-36205706)
chr2 (163-207)||(45099882-45099926)
chr2 (163-207)||(2334414-2334458)
chr2 (163-207)||(5723252-5723296)
chr2 (163-207)||(6595002-6595046)
[»] chr1 (15 HSPs)
chr1 (16-207)||(9036544-9036733)
chr1 (16-207)||(44203760-44203950)
chr1 (16-207)||(21054086-21054271)
chr1 (16-207)||(9987329-9987515)
chr1 (23-207)||(20622097-20622277)
chr1 (16-207)||(40282505-40282693)
chr1 (46-207)||(51765525-51765684)
chr1 (49-207)||(8550670-8550827)
chr1 (163-207)||(13316348-13316392)
chr1 (155-207)||(42297963-42298015)
chr1 (163-201)||(3189464-3189502)
chr1 (163-201)||(3198281-3198319)
chr1 (163-201)||(3207120-3207158)
chr1 (163-201)||(20762806-20762844)
chr1 (170-207)||(29136375-29136412)
[»] chr6 (25 HSPs)
chr6 (16-207)||(25421434-25421624)
chr6 (16-207)||(13154043-13154233)
chr6 (16-207)||(16578370-16578558)
chr6 (16-207)||(16616822-16617010)
chr6 (16-207)||(16653240-16653428)
chr6 (16-207)||(33341953-33342145)
chr6 (16-207)||(34167208-34167398)
chr6 (16-207)||(6027375-6027564)
chr6 (16-199)||(16555005-16555185)
chr6 (16-199)||(16631561-16631741)
chr6 (16-207)||(34164986-34165176)
chr6 (16-207)||(27647988-27648169)
chr6 (66-207)||(412230-412369)
chr6 (45-207)||(3072639-3072799)
chr6 (16-79)||(6136153-6136216)
chr6 (64-207)||(6097349-6097491)
chr6 (151-207)||(2171516-2171572)
chr6 (163-207)||(16452325-16452369)
chr6 (170-207)||(30834539-30834576)
chr6 (163-207)||(5406196-5406240)
chr6 (163-207)||(5410521-5410565)
chr6 (163-207)||(31404671-31404715)
chr6 (158-207)||(3808699-3808748)
chr6 (174-207)||(5409076-5409109)
chr6 (174-207)||(5413401-5413434)
[»] scaffold0674 (1 HSPs)
scaffold0674 (16-207)||(3576-3766)
[»] chr3 (32 HSPs)
chr3 (16-207)||(25637555-25637748)
chr3 (16-207)||(3617578-3617768)
chr3 (16-207)||(4598373-4598563)
chr3 (16-207)||(4600594-4600784)
chr3 (16-207)||(10211523-10211713)
chr3 (16-207)||(10209303-10209493)
chr3 (16-207)||(10056347-10056537)
chr3 (16-207)||(10058569-10058759)
chr3 (16-207)||(10060791-10060981)
chr3 (16-207)||(10063013-10063203)
chr3 (16-207)||(10065235-10065425)
chr3 (16-206)||(10067435-10067624)
chr3 (16-207)||(45283114-45283303)
chr3 (16-207)||(54635252-54635440)
chr3 (22-207)||(6716627-6716811)
chr3 (16-207)||(7779858-7780044)
chr3 (45-207)||(801220-801376)
chr3 (46-207)||(23200020-23200178)
chr3 (48-207)||(23197823-23197979)
chr3 (49-199)||(19683774-19683921)
chr3 (163-207)||(7762393-7762437)
chr3 (163-207)||(9581410-9581454)
chr3 (155-199)||(9636114-9636158)
chr3 (155-207)||(43401789-43401841)
chr3 (163-207)||(45095291-45095335)
chr3 (163-207)||(37408586-37408630)
chr3 (159-207)||(43403736-43403784)
chr3 (155-207)||(49199457-49199509)
chr3 (163-201)||(5258140-5258178)
chr3 (49-207)||(7764592-7764747)
chr3 (163-199)||(5260319-5260355)
chr3 (163-207)||(34491340-34491383)
[»] scaffold1808 (1 HSPs)
scaffold1808 (16-199)||(1-183)
[»] scaffold0565 (1 HSPs)
scaffold0565 (16-207)||(2454-2644)
[»] chr4 (14 HSPs)
chr4 (16-207)||(8393522-8393713)
chr4 (16-207)||(8395731-8395922)
chr4 (16-207)||(7125030-7125220)
chr4 (16-184)||(7122834-7123001)
chr4 (16-207)||(5136193-5136384)
chr4 (16-207)||(5138418-5138609)
chr4 (23-207)||(31495168-31495356)
chr4 (155-207)||(2209842-2209894)
chr4 (163-207)||(56178633-56178677)
chr4 (49-207)||(5369968-5370123)
chr4 (170-207)||(29999809-29999846)
chr4 (163-207)||(13992289-13992333)
chr4 (163-207)||(48143171-48143215)
chr4 (155-207)||(50262689-50262741)
[»] scaffold0137 (1 HSPs)
scaffold0137 (16-207)||(6401-6593)
[»] chr8 (15 HSPs)
chr8 (16-207)||(15290652-15290842)
chr8 (16-207)||(15471021-15471211)
chr8 (16-207)||(42575175-42575364)
chr8 (16-207)||(25690082-25690271)
chr8 (16-207)||(3439631-3439817)
chr8 (46-207)||(2627864-2628024)
chr8 (47-207)||(31218385-31218541)
chr8 (66-207)||(42498322-42498459)
chr8 (163-207)||(17982781-17982825)
chr8 (163-207)||(19945355-19945399)
chr8 (163-207)||(34254327-34254371)
chr8 (163-207)||(34256503-34256547)
chr8 (164-199)||(1746216-1746251)
chr8 (72-109)||(32902096-32902133)
chr8 (163-207)||(44303983-44304027)
[»] scaffold0491 (2 HSPs)
scaffold0491 (46-207)||(11042-11201)
scaffold0491 (46-207)||(8616-8775)
[»] scaffold0286 (1 HSPs)
scaffold0286 (151-207)||(11685-11741)
[»] scaffold1519 (1 HSPs)
scaffold1519 (146-207)||(1043-1103)
[»] scaffold0002 (1 HSPs)
scaffold0002 (66-207)||(434661-434798)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 1560515 - 1560706
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1560515 gagagtggtaaccaccgaacagagtatattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 1560614  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  1560615 atcacaagataaacaaggagagggaagaagaaaac-aaatacaccaagagattggttacccagttcggtccaaacttgacctactctggagga 1560706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 6594408 - 6594598
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6594408 gagagtggtaaccaccaaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 6594507  T
Q  116 atcacaagataaacaaggagagggaaaagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||| || | |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  6594508 atcacaagataaacaaggag-ggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 6594598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 6592190 - 6592380
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592190 gagagtggtaaccaccaaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 6592289  T
Q  116 atcacaagataaacaaggagagggaaaagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||| |||||||||| || | |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  6592290 atcacaagaaaaacaaggag-ggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 6592380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 18392044 - 18392236
Alignment:
Q  14 cagagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaa 113  Q
    |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18392044 cagagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagcaa 18392143  T
Q  114 caatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||||  |||||||||||||| |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  18392144 caatcacaagat--acaaggagagggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 18392236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 32060172 - 32060362
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32060172 gagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 32060271  T
Q  116 atcacaagataaacaaggagagggaaaagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||| || | |||||||||| | |||| ||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  32060272 atcacaagataaacaaggag-ggaagaagaaaacaataaacacaaagagattgttcaccaagttcggtccaaacttgacctactctggagga 32060362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 18388610 - 18388800
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18388610 gagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagcaaca 18388709  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||  |||| ||||||||| |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  18388710 atcacaagat--acaaagagagggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 18388800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 20344213 - 20344025
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacacca---cctagatctaatctaggaaccaagtgtgaaacacaaagca 112  Q
    |||||||||||||| ||||||||||||   |||||||||| || | |||||| ||||   ||||||||||||||||||| |||||| |||||||||| |     
T  20344213 gagagtggtaaccaccaaacaaagtgt---gtgcaagcaacaatcgacaaaaaaccagcacctagatctaatctaggaaacaagtgagaaacacaaaac- 20344118  T
Q  113 acaatcacaagataaacaaggagagggaa-aagaaaacaaaatacacc-aagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||  |||||||||||| ||||||||||||  |||| ||||||||| |||||||||||||||| ||||||||||||||| |||||    
T  20344117 acaatcacaagataa--aaggagagggaagaagaaaacaaaa-gcaccaaagagattgttcacccagttcggtcc-aacttgacctactctggagga 20344025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 24790074 - 24789969
Alignment:
Q  100 gaaacacaaagcaacaatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctac 198  Q
    ||||||||| ||| |||||||||||||||  ||||||||||| |||||||  ||| |||||||||||||| |||||||||||||||||||||||||||||    
T  24790074 gaaacacaatgca-caatcacaagataaa--aggagagggaagaagaaaaacaaagacaccaagagattgttcacccagttcggtccaaacttgacctac 24789978  T
Q  199 tctcgagga 207  Q
    ||| |||||    
T  24789977 tctggagga 24789969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 39731656 - 39731497
Alignment:
Q  46 gtgcaagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaa 143  Q
    |||||||||| || |||||| |||| ||||||||||||||||||||| ||| |||  || |||||| || ||| |||||||||||  ||||||||||| |    
T  39731656 gtgcaagcaataatcaacaataacaacacctagatctaatctaggaaacaaagtgaaaagcacaaacca-caagcacaagataaa--aggagagggaaga 39731560  T
Q  144 gaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    | |||  ||| ||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  39731559 ggaaaacaaagacaccaa-agattgttcacccagttcggtccaaacttgacctactctggagga 39731497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 43504009 - 43504186
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaac 114  Q
    |||||||||||||| ||| |||||||| | |||||||||| || ||||||||   || |||||||||||||||||| ||| |||  || || ||| || |    
T  43504009 gagagtggtaaccaccaa-caaagtgtgt-gtgcaagcaataatcaacaaaaa--cagctagatctaatctaggaatcaaagtgaaaagcataaaaca-c 43504103  T
Q  115 aatcacaagataaacaaggagagggaaaagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctact 199  Q
    || |||||||||||  ||||||||||| || |||  ||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  43504104 aagcacaagataaa--aggagagggaagaggaaaacaaagacaccaagagattgttcacccagttcgatccaaacttgacctact 43504186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 35854094 - 35854042
Alignment:
Q  155 acaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  35854094 acaccaagagattgttcacccagttcggtccaaacttgacctactctggagga 35854042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 25766948 - 25767000
Alignment:
Q  155 acaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  25766948 acaccaagagattgttcacccagttcggtctaaacttgacctactctggagga 25767000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 24790312 - 24790230
Alignment:
Q  19 agtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaac 104  Q
    ||||||||||| |||||||||||    ||||||| || || |||||||||||||||||||||||||||||||| || ||| |||||    
T  24790312 agtggtaaccaccaaacaaagtgc---gtgcaagtaataatcaacaaaacaccacctagatctaatctaggaaacaggtgagaaac 24790230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 207
Target Start/End: Complemental strand, 25616137 - 25615981
Alignment:
Q  49 caagcaagaaacaacaa-aacaccacctagatctaatctaggaacc-aagtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaagaa 146  Q
    ||||||| || |||||| |||| ||||||||||||||||||||| | |||||  || |||||| | |||| ||||||||||| |  |||| | || |||     
T  25616137 caagcaataatcaacaataacaacacctagatctaatctaggaatcgaagtgaaaagcacaaaaccacaagcacaagataaaga--gagaag-aagagag 25616041  T
Q  147 aacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||  ||| ||||||| |||||| || ||||||||||||||||||||||||||||| |||||    
T  25616040 aaacaaacacaccaa-agattgttcgcccagttcggtccaaacttgacctactctggagga 25615981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 23555212 - 23555168
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  23555212 agattgttcacccagttcggtccaaacttgacctactctggagga 23555168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 29991225 - 29991181
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  29991225 agattgttcacccagttcggtccaaacttgacctactctggagga 29991181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 34310712 - 34310756
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  34310712 agattgttcacccagttcggtccaaacttgacctactctggagga 34310756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 48408984 - 48408932
Alignment:
Q  155 acaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||| |||| ||||||||||||||| ||||||||| |||||| |||||    
T  48408984 acaccaagaaattgttcacccagttcggtctaaacttgacatactctggagga 48408932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 2390461 - 2390410
Alignment:
Q  155 acaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||  ||||| |||||||||| ||||||||||||||| |||||    
T  2390461 acaccaagagattattcacctagttcggtcc-aacttgacctactctggagga 2390410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 22270151 - 22270101
Alignment:
Q  155 acaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||| | |||||||||||||||| ||||||||||||||| |||||    
T  22270151 acaccaagagat-gttcacccagttcggtcc-aacttgacctactctggagga 22270101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 40380409 - 40380219
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40380409 gagagtggtaaccaccaaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 40380310  T
Q  116 atcacaagataaacaaggagagggaaaagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||| || | |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  40380309 atcacaagataaacaaggag-ggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 40380219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 40382620 - 40382430
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40382620 gagagtggtaaccaccaaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 40382521  T
Q  116 atcacaagataaacaaggagagggaaaagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||| || | |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  40382520 atcacaagataaacaaggag-ggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 40382430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 10593576 - 10593386
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  10593576 gagagtggtaaccaccaaacaaagtgtattgtgcaagcaacaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagc-aca 10593478  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||||||||||||||||||  ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  10593477 atcacaagataaacaaggagagggaagtagaaaac-aaatacaccaagagattgttcacccagttcggtccaaacttgacctactctggagga 10593386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 25078439 - 25078249
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25078439 gagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagcaaca 25078340  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||  |||||||||||||| |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  25078339 atcacaagat--acaaggagagggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 25078249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 25136408 - 25136218
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25136408 gagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagcaaca 25136309  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||  |||||||||||||| |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  25136308 atcacaagat--acaaggagagggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 25136218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 16544729 - 16544537
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaac- 114  Q
    |||||||||||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  ||||||||||     
T  16544729 gagagtggtaaccaccaaacaaagcttattgagcaagcaagaaacaacaaaacaccacctagatccaatctaggaaacaagtgtgaa--acaaagcaact 16544632  T
Q  115 aatcacaagataaac-aaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    || |||||||||||| |||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  16544631 aaacacaagataaacaaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 16544537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 16546951 - 16546759
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaac- 114  Q
    ||||||| |||||| |||||||||  ||||| ||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||  ||||||||||     
T  16546951 gagagtgataaccaccaaacaaagcttattgagcaagcaagaaacaacaaaacaccacctaaatccaatctaggaaacaagtgtgaa--acaaagcaact 16546854  T
Q  115 aatcacaagataaac-aaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    || |||||||||||| |||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  16546853 aaacacaagataaacaaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 16546759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 29720679 - 29720492
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| |||||||||||| | || ||||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||  || ||    
T  29720679 gagagtggtaaccaccaaacaaagtgtgt-gtacaagcaataatcaacaaaacaccacctagatctaatctaggaaacaagtgagaaacacaataca-ca 29720582  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||  ||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  29720581 atcacaagataaa--aggagagggaagaagaaaacaaag-acaccaagagattgttcacccagttcggtccaaacttgacctactctagagga 29720492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 29751012 - 29751200
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| ||||||| |||| | |||||||||| || |||||||||||||||||||| |||||||| || |||||| ||||||||   || ||    
T  29751012 gagagtggtaaccaccaaacaatgtgtgt-gtgcaagcaataatcaacaaaacaccacctagatataatctagaaaacaagtgagaaacacagtaca-ca 29751109  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||  ||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  29751110 atcacaagataaa--aggagagggaagaagaaaacaaaagacaccaagagattgttcacccagttcggtccaaacttgacctactctggagga 29751200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 29722838 - 29722652
Alignment:
Q  17 agagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaacaa 116  Q
    ||||||||||||| |||||||||||| | || ||||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||  | ||||    
T  29722838 agagtggtaaccaccaaacaaagtgtgt-gtacaagcaataatcaacaaaacaccacctagatctaatctaggaaacaagtgagaaacacaatac-acaa 29722741  T
Q  117 tcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||  |||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||| |||||||||||| |||||    
T  29722740 tcacaagataa--aaggagagggaagaagaaaac-aaagacaccaagagattgttcacccagttcggtccaaatttgacctactctggagga 29722652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 22536145 - 22536330
Alignment:
Q  16 gagagtggtaaccatcaaa-caaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaac 114  Q
    ||||| |||||||| |||| ||||||||||   |||||||| || |||||||| || |||||||||||||||||||| |||||| ||||| |||| || |    
T  22536145 gagagcggtaaccaccaaagcaaagtgtat---gcaagcaacaatcaacaaaaaac-acctagatctaatctaggaaacaagtgagaaactcaaaaca-c 22536239  T
Q  115 aatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||||||  ||| ||||||| ||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  22536240 aatcacaagataaa--aggggagggaagaagaaaacaaaag-caccaagagattgttcacccagttcggtccaaacttgacctactctggagga 22536330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 45 - 207
Target Start/End: Original strand, 9789104 - 9789264
Alignment:
Q  45 tgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaag 144  Q
    ||||||||||| || |||||||||| |||||||||||||||||||||  |||||  ||||||||  || ||| ||||||||||||  |||||||||| ||    
T  9789104 tgtgcaagcaaaaatcaacaaaacagcacctagatctaatctaggaaagaagtgaaaaacacaataca-caagcacaagataaac--ggagagggaagag 9789200  T
Q  145 aaaacaaaatacaccaa-gagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
     |||  ||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  9789201 gaaaacaaagacaccaaagagattgttcacccagttcggtccaaacttgacctactctggagga 9789264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 207
Target Start/End: Original strand, 18441524 - 18441688
Alignment:
Q  45 tgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaa----cacaaagcaacaatcacaagataaacaaggagaggga 140  Q
    ||||||||||| || |||||||||| |||||||||||||||||||||  |||||  |||    |||||  || ||| ||||||||||||  |||||||||    
T  18441524 tgtgcaagcaataatcaacaaaacagcacctagatctaatctaggaaagaagtgaaaaaaaaacacaataca-caagcacaagataaac--ggagaggga 18441620  T
Q  141 aaagaaaacaaaatacaccaa-gagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    | || |||  ||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  18441621 agaggaaaacaaagacaccaaagagattgttcacccagttcggtccaaacttgacctactctagagga 18441688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 16409764 - 16409603
Alignment:
Q  46 gtgcaagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaa 143  Q
    |||||||||| || |||||| |||| ||||||||||||||||||||| ||| |||  || || ||| || ||| |||||||||||  ||||||||||| |    
T  16409764 gtgcaagcaataatcaacaataacaacacctagatctaatctaggaaacaaagtgaaaagcataaaaca-caagcacaagataaa--aggagagggaaga 16409668  T
Q  144 gaaaacaaaatacaccaa-gagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    | |||  ||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  16409667 ggaaaacaaagacaccaaagagattgttcacccagttcggtccaaacttgacctactctggagga 16409603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 26178150 - 26178010
Alignment:
Q  66 aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaagaaaacaaaatacaccaa-ga 163  Q
    |||| ||||||||||||||||||||| ||| |||  || || ||| || ||| |||||||||||  ||||||||||| || |||  ||| ||||||| ||    
T  26178150 aacaacacctagatctaatctaggaatcaaagtgaaaagcataaaaca-caagcacaagataaa--aggagagggaagaggaaaacaaagacaccaaaga 26178054  T
Q  164 gattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||| |||||||||||||||||||||||||||||||| |||||    
T  26178053 gattgttcacccagttcggtccaaacttgacctactctggagga 26178010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 26170983 - 26170890
Alignment:
Q  113 acaatcacaagataaacaaggagagggaaaagaaaacaaaatacaccaa-gagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||| |||||||||||  ||||||||||| || |||  ||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  26170983 acaagcacaagataaa--aggagagggaagaggaaaacaaagacaccaaagagattgttcacccagttcggtccaaacttgacctactctggagga 26170890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 37439313 - 37439269
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  37439313 agattgttcacccagttcggtccaaacttgacctactctggagga 37439269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 207
Target Start/End: Complemental strand, 13240025 - 13239879
Alignment:
Q  58 aacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaagaaaacaaaata 155  Q
    |||||||| |||| |||||||||||||||||| || ||| |||  ||||||||| | |||| || ||||||||  |||||||  || ||| ||  ||| |    
T  13240025 aacaacaataacaacacctagatctaatctagtaatcaaagtgaaaaacacaaaaccacaagcaaaagataaa--aggagag--aagagagaaacaaaca 13239930  T
Q  156 caccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| | |||| ||||||||||||||||||| |||||||||||| |||||    
T  13239929 caccaaaa-attgttcacccagttcggtccaaatttgacctactctggagga 13239879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 13343232 - 13343188
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||| ||||||||||| |||||    
T  13343232 agattgttcacccagttcggtccaaacatgacctactctggagga 13343188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 25412932 - 25412888
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| ||||||||||| |||||||||||||||||||| |||||    
T  25412932 agattgttcacccagttcagtccaaacttgacctactctggagga 25412888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 30182852 - 30182716
Alignment:
Q  66 aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaagaaaacaaaatacaccaagag 164  Q
    |||| ||||||||||||||||||||| ||| |||  || |||||| || ||| |||||||||||  |||||||  || ||| ||  ||| ||||||| ||    
T  30182852 aacaacacctagatctaatctaggaaacaaagtgaaaagcacaaaaca-caagcacaagataaa--aggagag--aagagagaaacaaacacaccaa-ag 30182759  T
Q  165 attggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||| ||| ||||||||||||||||||||| |||||| |||||    
T  30182758 attgttcatccagttcggtccaaacttgacatactctggagga 30182716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 213630 - 213601
Alignment:
Q  170 tcacccagttcggtccaaacttgacctact 199  Q
    ||||||||||||||||||||||||||||||    
T  213630 tcacccagttcggtccaaacttgacctact 213601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 28278494 - 28278444
Alignment:
Q  155 acaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||| |||| |||||||||||||||| ||||||||||||||| |||||    
T  28278494 acaccaaga-attgttcacccagttcggtcc-aacttgacctactctggagga 28278444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 36074039 - 36074075
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctact 199  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  36074039 agattgttcatccagttcggtccaaacttgacctact 36074075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 13655879 - 13656072
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13655879 gagagtggtaaccaccgaacagagtatattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagcaaca 13655978  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacacc-aagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  13655979 atcacaagataaacaaggagagggaagaagaaaacaacaaacaccaaagagattggtcacccagttcggtccaaacttgacctactctggagga 13656072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 12647236 - 12647426
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12647236 gagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagcaaca 12647335  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||  |||||||||||||| |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  12647336 atcacaagat--acaaggagagggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 12647426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 6267005 - 6266819
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| ||||||||||||   ||| |||||| || |||||||||| |||||||||||||||||||||  |||||  ||||||||  || ||    
T  6267005 gagagtggtaaccaccaaacaaagtgt---gtgtaagcaaaaatcaacaaaacaacacctagatctaatctaggaaagaagtgaaaaacacaataca-ca 6266910  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    | ||||||||||||  |||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  6266909 agcacaagataaac--ggagagggaagaagaaaacaaaagacaccaagagattgttcacccagttcggtccaaacttgacctactctggagga 6266819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 30833633 - 30833474
Alignment:
Q  46 gtgcaagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaa 143  Q
    |||||||||| || |||||| |||| ||||||||||||||||||||| ||| |||  || |||||| || ||| |||||||||||  ||||||||||| |    
T  30833633 gtgcaagcaataatcaacaataacaacacctagatctaatctaggaaacaaagtgaaaagcacaaacca-caagcacaagataaa--aggagagggaaga 30833537  T
Q  144 gaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    | |||  ||| ||||||| |||||| ||||||||||| |||||||||||||||||||| |||||    
T  30833536 ggaaaacaaagacaccaa-agattgttcacccagttcagtccaaacttgacctactctggagga 30833474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 207
Target Start/End: Original strand, 4484211 - 4484370
Alignment:
Q  46 gtgcaagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaagtgtgaaacacaaag-caacaatcacaagataaacaaggagagggaa-a 142  Q
    |||||||||| || |||||| |||| ||||||||||||||||||||| |||  ||||||  ||||  | |||| |||||||||||  ||||||||||| |    
T  4484211 gtgcaagcaataatcaacaataacaacacctagatctaatctaggaaacaaa-gtgaaaagcaaaaaccacaagcacaagataaa--aggagagggaaga 4484307  T
Q  143 agaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||  ||||||| |||||| ||||||||||| |||||||||||||||||||| |||||    
T  4484308 agaaaacaaag-acaccaa-agattgttcacccagttctgtccaaacttgacctactctggagga 4484370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 32289853 - 32289692
Alignment:
Q  46 gtgcaagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaa 143  Q
    |||||||||| || |||||| |||| ||||||||||||||||||||| ||| |||  || || ||| || ||| |||||||||||  ||||||||||| |    
T  32289853 gtgcaagcaataatcaacaataacaacacctagatctaatctaggaaacaaagtgaaaagcataaaaca-caagcacaagataaa--aggagagggaaga 32289757  T
Q  144 gaaaacaaaatacaccaa-gagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    | |||  ||  ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  32289756 ggaaaacaaggacaccaaagagattgttcacccagttcggtccaaacttgacctactctggagga 32289692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 36987961 - 36988116
Alignment:
Q  49 caagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaagaa 146  Q
    ||||||| || |||||| |||| ||||||||||||||||||||| ||| |||  || |||||||| |||| || ||||||||  |||||||  || |||     
T  36987961 caagcaataatcaacaataacaacacctagatctaatctaggaatcaaagtgaaaagcacaaagccacaagcaaaagataaa--aggagag--aagagag 36988056  T
Q  147 aacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||  ||| ||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  36988057 aaacaaacacaccaa-agattgttcacccagttcggtccaaacttgacctactctggagga 36988116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 47 - 207
Target Start/End: Original strand, 4503017 - 4503173
Alignment:
Q  47 tgcaagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaag 144  Q
    ||||||||| || |||||| |||| ||||||||||||||||||||| ||| |||  || |||||| || ||| |||||||||||  |||||||  || ||    
T  4503017 tgcaagcaataatcaacaataacagcacctagatctaatctaggaaacaaagtgaaaagcacaaaaca-caagcacaagataaa--aggagag--aagag 4503111  T
Q  145 aaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    | ||  ||| ||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  4503112 agaaacaaacacaccaa-agattgttcacccagttcggtccaaacttgacctactctggagga 4503173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 36205661 - 36205706
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgaggat 208  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||    
T  36205661 agattgttcacccagttcggtccaaacttgacctactctggaggat 36205706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 45099926 - 45099882
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  45099926 agattgttcacccagttcggtccaaacttgacctactctggagga 45099882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 2334414 - 2334458
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| || ||||||||||||||||||||||||||||| |||||    
T  2334414 agattgttcccccagttcggtccaaacttgacctactctggagga 2334458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 5723252 - 5723296
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||| ||||||||| |||||    
T  5723252 agattgttcacccagttcggtccaaacttaacctactctagagga 5723296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 6595002 - 6595046
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||| ||||||||||||||||||||||||||| |||||    
T  6595002 agattgttcactcagttcggtccaaacttgacctactctggagga 6595046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 9036733 - 9036544
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  9036733 gagagtggtaaccaccaaacaaagtgt-ttgtgcaagcaacaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagca-ca 9036636  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9036635 atcacaagataaacaaggagagggaagaagaaaacaaa-tacaccaagagattgttcacccagttcggtccaaacttgacctactctcgagga 9036544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 44203950 - 44203760
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44203950 gagagtggtaaccaccaaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagcaaca 44203851  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||  |||||||||||||| |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  44203850 atcacaagat--acaaggagagggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 44203760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 21054271 - 21054086
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| ||||| ||||||   |||||||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||  || ||    
T  21054271 gagagtggtaaccaccaaactaagtgt---gtgcaagcaataatcaacaaaacaccacctagatctaatctaggaaacaagtgagaaacacaataca-ca 21054176  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21054175 atcacaagataaa--aggagagggaagaagaaaacaaa-tacaccaagagattggtcacccagttcggtccaaacttgacctactctggagga 21054086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 9987515 - 9987329
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| ||| ||||||||   |||||||||| || |||||||||||||||||||||||||||||||| |||||| ||||||| |  || ||    
T  9987515 gagagtggtaaccaccaatcaaagtgt---gtgcaagcaataatcaacaaaacaccacctagatctaatctaggaaacaagtgagaaacactataca-ca 9987420  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||  ||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  9987419 atcacaagataaa--aggagagggaagaagaaaacaaaagacaccaagagattgttcacccagttcggtccaaacttgacctactctggagga 9987329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 20622097 - 20622277
Alignment:
Q  23 gtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaacaatcacaa 122  Q
    ||||||| |||||||||||| | |||||||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||  | ||||||||||    
T  20622097 gtaaccaccaaacaaagtgtgt-gtgcaagcaataatcaacaaaacaccacctagatctaatctaggaaacaagtgagaaacacaatac-acaatcacaa 20622194  T
Q  123 gataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||  |||||||||||| |||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  20622195 gataa--aaggagagggaagaagaaaac-aaagacaccaagagattgttcacccagttcggtccaaacttgacctactctggagga 20622277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 40282693 - 40282505
Alignment:
Q  16 gagagtggtaaccatcaaa-caaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaac 114  Q
    |||||||||||||| |||| |||||||| | |||||||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||  | ||    
T  40282693 gagagtggtaaccaccaaaacaaagtgtgt-gtgcaagcaataatcaacaaaacaccacctagatctaatctaggaaacaagtgagaaacacaatac-ac 40282596  T
Q  115 aatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||  |||||||||||| |||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  40282595 aatcacaagataa--aaggagagggaagaagaaaac-aaagacaccaagagattgttcacccagttcggtccaaacttgacctactctggagga 40282505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 51765684 - 51765525
Alignment:
Q  46 gtgcaagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaa 143  Q
    |||||||||| || |||||| |||| ||||||||||||||||||||| ||| |||  || |||||| || ||| |||||||||||  ||||||||||| |    
T  51765684 gtgcaagcaataatcaacaataacaacacctagatctaatctaggaaacaaagtgaaaagcacaaacca-caagcacaagataaa--aggagagggaaga 51765588  T
Q  144 gaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    | |||  ||| ||||||| |||||| ||||||||||||||||||||||| |||||||| |||||    
T  51765587 ggaaaacaaagacaccaa-agattgttcacccagttcggtccaaacttgtcctactctggagga 51765525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 8550670 - 8550827
Alignment:
Q  49 caagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaa-aga 145  Q
    ||||||| || |||||| |||| ||||||||||||||||||||| ||| |||  |||||||||   |||| ||||||||||| |  |||| | | | |||    
T  8550670 caagcaataatcaacaataacaacacctagatctaatctaggaatcaaagtgaaaaacacaaaatcacaagcacaagataaaga--gagaagaagagaga 8550767  T
Q  146 aaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||  ||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  8550768 aaacaaac-acaccaa-agattgttcacccagttcggtccaaacttgacctactctggagga 8550827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 13316348 - 13316392
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  13316348 agattgttcacccagttcggtccaaacttgacctactctggagga 13316392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 42297963 - 42298015
Alignment:
Q  155 acaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||| |||||||||||||||||| | ||||||||||| |||||    
T  42297963 acaccaagagattgttcacccagttcggtccaaccatgacctactctggagga 42298015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 3189502 - 3189464
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactct 201  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  3189502 agattgttcacccagttcggtccaaacttgacctactct 3189464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 3198319 - 3198281
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactct 201  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  3198319 agattgttcacccagttcggtccaaacttgacctactct 3198281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 3207158 - 3207120
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactct 201  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  3207158 agattgttcacccagttcggtccaaacttgacctactct 3207120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 20762844 - 20762806
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactct 201  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  20762844 agattggtcacctagttcggtccaaacttgacctactct 20762806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 29136412 - 29136375
Alignment:
Q  170 tcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  29136412 tcacctagttcggtccaaacttgacctactctggagga 29136375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 25421624 - 25421434
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25421624 gagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 25421525  T
Q  116 atcacaagataaacaaggagagggaaaagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||| || | |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  25421524 atcacaagataaacaaggag-ggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 25421434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 13154233 - 13154043
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||  ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13154233 gagagtggtaaccacctaacaaagcttattgagcaagcaagaaacaacaatacaccacctagatcgaatctaggaaccaagtgtgaaacacaaagcaaca 13154134  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||  |||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  13154133 atcacaagat--acaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 13154043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 16578370 - 16578558
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| ||||||||||||   |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  16578370 gagagtggtaaccaccaaacaaagtgt---gtgcaagcaacaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagc-aca 16578465  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacacc-aagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  16578466 atcacaagataaacaaggagagggaagaagaaaac-aaatacaccaaagagattgttcacccagttcggtccaaacttgacctactctggagga 16578558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 16617010 - 16616822
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| ||||||||||||   |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  16617010 gagagtggtaaccaccaaacaaagtgt---gtgcaagcaacaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagc-aca 16616915  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacacc-aagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  16616914 atcacaagataaacaaggagagggaagaagaaaac-aaatacaccaaagagattgttcacccagttcggtccaaacttgacctactctggagga 16616822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 16653428 - 16653240
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| ||||||||||||   |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  16653428 gagagtggtaaccaccaaacaaagtgt---gtgcaagcaacaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagc-aca 16653333  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacacc-aagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  16653332 atcacaagataaacaaggagagggaagaagaaaac-aaatacaccaaagagattgttcacccagttcggtccaaacttgacctactctggagga 16653240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 33341953 - 33342145
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaac- 114  Q
    |||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||     
T  33341953 gagagtggtaaccaccaaacaaagcttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaa--acaaagcaact 33342050  T
Q  115 aatcacaagataaac-aaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    || |||||||||||| |||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  33342051 aaacacaagataaacaaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 33342145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 34167398 - 34167208
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| ||||||||   ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34167398 gagagtggtaaccaccaaacaaaaaatattgagcaagcaaaaaacaacaaaacaccacctagatcaaatctaggaaccaagtgtgaaacacaaagcaaca 34167299  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||  |||||||||||||| |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  34167298 atcacaagat--acaaggagagggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 34167208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 6027564 - 6027375
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    ||||| |||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6027564 gagaggggtaaccacctaacaaggtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 6027465  T
Q  116 atcacaagataaacaaggagagggaaaagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||||| | |||| || | |||||||||| | |||| ||||||||| ||||||||||||||||||||||||| |||||| |||||    
T  6027464 atcacaagataaa-atggag-ggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacatactctggagga 6027375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 16555185 - 16555005
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| ||||||||||||   |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  16555185 gagagtggtaaccaccaaacaaagtgt---gtgcaagcaacaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagc-aca 16555090  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacacc-aagagattggtcacccagttcggtccaaacttgacctact 199  Q
    |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  16555089 atcacaagataaacaaggagagggaagaagaaaac-aaatacaccaaagagattgttcacccagttcggtccaaacttgacctact 16555005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 16631741 - 16631561
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| ||||||||||||   |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  16631741 gagagtggtaaccaccaaacaaagtgt---gtgcaagcaacaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagc-aca 16631646  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacacc-aagagattggtcacccagttcggtccaaacttgacctact 199  Q
    |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  16631645 atcacaagataaacaaggagagggaagaagaaaac-aaatacaccaaagagattgttcacccagttcggtccaaacttgacctact 16631561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 34165176 - 34164986
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaac- 114  Q
    |||||||||||||| ||||| |||  ||||| ||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||  |||||||     
T  34165176 gagagtggtaaccaccaaaccaagcttattgagcaagcaagaaacaacaaa-caccacctagatccaatctaggaaacaagtgtgaaaca--aagcaact 34165080  T
Q  115 aatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    || |||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  34165079 aaacacaagataaacaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 34164986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 27648169 - 27647988
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||||| | |||||||||| || |||||||||||||||||||||||||||||||| |||||| ||||| ||       |    
T  27648169 gagagtggtaaccaccgaacaaagtgtgt-gtgcaagcaataatcaacaaaacaccacctagatctaatctaggaaacaagtgagaaactca-------a 27648078  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
      ||||||||||  |||||||||||| ||||||||||||  ||||||||||||| |||||||||||||||||||||||| ||||||| |||||    
T  27648077 tacacaagataa--aaggagagggaagaagaaaacaaaa-gcaccaagagattgttcacccagttcggtccaaacttgatctactctggagga 27647988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 412369 - 412230
Alignment:
Q  66 aacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaa-ga 163  Q
    |||| ||||||||||||||||||| | ||||||  ||||||||  || ||| |||||||||||  ||||||||||| ||||||||||| |||||||| ||    
T  412369 aacagcacctagatctaatctaggtaacaagtgaaaaacacaataca-caagcacaagataaa--aggagagggaagaagaaaacaaa-tacaccaaaga 412274  T
Q  164 gattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||| |||||||||||||||||||||||||||||||| |||||    
T  412273 gattgttcacccagttcggtccaaacttgacctactctggagga 412230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 45 - 207
Target Start/End: Original strand, 3072639 - 3072799
Alignment:
Q  45 tgtgcaagcaagaaacaacaaaac-accacctagatctaatctaggaaccaagtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaa 143  Q
    ||||||||||| || ||||||||  | ||| ||||||||||||||||| ||||||  || || ||| || ||| |||||||||||  ||||||||||| |    
T  3072639 tgtgcaagcaataatcaacaaaaatagcacatagatctaatctaggaaacaagtgaaaagcataaaaca-caagcacaagataaa--aggagagggaaga 3072735  T
Q  144 gaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    | |||  ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  3072736 ggaaaacaaagacaccaagagattgttcacccagttcggtccaaacttgacctactctggagga 3072799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 6136153 - 6136216
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagat 79  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6136153 gagagtggtaaccaccaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagat 6136216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 207
Target Start/End: Original strand, 6097349 - 6097491
Alignment:
Q  64 aaaacaccacctagatctaatctaggaaccaagtgtgaaa-cacaaagcaacaatcacaagataaacaaggagagggaaaagaaaacaaaatacaccaa- 161  Q
    |||||| ||||| ||||||||||||| | ||||||  ||| |||||  || |||||||||||||  ||||||||||||| || |||  ||| |||||||     
T  6097349 aaaacagcaccttgatctaatctaggtaacaagtggaaaaacacaataca-caatcacaagata--caaggagagggaagaggaaaacaaagacaccaaa 6097445  T
Q  162 gagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||    
T  6097446 gagattgttcacccagttcggtccaaacttgacctactctggagga 6097491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 2171516 - 2171572
Alignment:
Q  151 aaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  2171516 aaatacaccaagagattgttcacccagttcggtccaaacttgacctactctggagga 2171572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 16452325 - 16452369
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  16452325 agattgttcacccagttcggtccaaacttgacctactctggagga 16452369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 30834539 - 30834576
Alignment:
Q  170 tcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||||||||| |||||    
T  30834539 tcacccagttcggtccaaacttgacctactctggagga 30834576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 5406196 - 5406240
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||| ||||||||||||||||| |||||    
T  5406196 agattgttcacccagttcggttcaaacttgacctactctggagga 5406240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 5410521 - 5410565
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||| ||||||||||||||||| |||||    
T  5410521 agattgttcacccagttcggttcaaacttgacctactctggagga 5410565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 31404671 - 31404715
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||    
T  31404671 agattgttcacccagttcggtccaaacttggcctactctggagga 31404715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 3808699 - 3808748
Alignment:
Q  158 ccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||| ||||| |||||||||||| | ||||||||||| |||||    
T  3808699 ccaagagattgttcacctagttcggtccaatcatgacctactctggagga 3808748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 5409076 - 5409109
Alignment:
Q  174 ccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||||| |||||    
T  5409076 ccagttcggtccaaacttgacctactctggagga 5409109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 5413401 - 5413434
Alignment:
Q  174 ccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||||| |||||    
T  5413401 ccagttcggtccaaacttgacctactctggagga 5413434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 3576 - 3766
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3576 gagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagcaaca 3675  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||  |||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  3676 atcacaagat--acaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 3766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 25637748 - 25637555
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagc-aac 114  Q
    |||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  25637748 gagagtggtaaccacctaacaaagtgtattgtgcaagcaggaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagcaaac 25637649  T
Q  115 aatcacaagataaacaaggagagggaa-aagaaaacaaaatacacc-aagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||||||||||||||||||| ||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  25637648 aatcacaagataaacaaggagagggaagaagaaaacaaaa-gcaccaaagagattggtcacccagttcggtccaaacttgacctactctggagga 25637555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 3617768 - 3617578
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3617768 gagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagcaaca 3617669  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||  |||||||||||||| |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  3617668 atcacaagat--acaaggagagggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 3617578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 4598373 - 4598563
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| |||||||||  ||||| ||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||  |||||||||||    
T  4598373 gagagtggtaaccaccaaacaaagcttattgagcaagcaagaaacaataaaacaccacctagatccaatctaggaaacaagtgtgaa--acaaagcaaca 4598470  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  4598471 atcacaagataaacaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 4598563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 4600594 - 4600784
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| |||||||||  ||||| |||||| |||||||||||||||||||||||||| |||||||||| ||||||||||  ||||| |||||    
T  4600594 gagagtggtaaccaccaaacaaagcttattgagcaagccagaaacaacaaaacaccacctagatccaatctaggaaacaagtgtgaa--acaaatcaaca 4600691  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  4600692 atcacaagataaacaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctagagga 4600784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 10211713 - 10211523
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| ||| |||||  ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  |||||||||||    
T  10211713 gagagtggtaaccaccaatcaaagcttattgagcaagcaagaaacaacaaaacaccacctagatccaatctaggaaacaagtgtgaa--acaaagcaaca 10211616  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||| | |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  10211615 atcacaagataaacaaggagagggaagatgaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 10211523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 10209493 - 10209303
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| ||| |||||  ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  |||||||||||    
T  10209493 gagagtggtaaccaccaatcaaagcttattgagcaagcaagaaacaacaaaacaccacctagatccaatctaggaaacaagtgtgaa--acaaagcaaca 10209396  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||| | |||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  10209395 atcacaagataaacaaggagagggaagatgaaaacaataaacacaaagagattggtcacccagtttggtccaaacttgacctactctggagga 10209303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 10056537 - 10056347
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaac- 114  Q
    |||||||||||||| ||||| |||  ||||| ||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||  |||||||     
T  10056537 gagagtggtaaccaccaaaccaagcttattgagcaagcaagaaacaacaaa-caccacctagatccaatctaggaaacaagtgtgaaaca--aagcaact 10056441  T
Q  115 aatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    || |||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  10056440 aaacacaagataaacaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 10056347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 10058759 - 10058569
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaac- 114  Q
    |||||||||||||| ||||| |||  ||||| ||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||  |||||||     
T  10058759 gagagtggtaaccaccaaaccaagcttattgagcaagcaagaaacaacaaa-caccacctagatccaatctaggaaacaagtgtgaaaca--aagcaact 10058663  T
Q  115 aatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    || |||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  10058662 aaacacaagataaacaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 10058569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 10060981 - 10060791
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaac- 114  Q
    |||||||||||||| ||||| |||  ||||| ||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||  |||||||     
T  10060981 gagagtggtaaccaccaaaccaagcttattgagcaagcaagaaacaacaaa-caccacctagatccaatctaggaaacaagtgtgaaaca--aagcaact 10060885  T
Q  115 aatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    || |||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  10060884 aaacacaagataaacaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 10060791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 10063203 - 10063013
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaac- 114  Q
    |||||||||||||| ||||| |||  ||||| ||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||  |||||||     
T  10063203 gagagtggtaaccaccaaaccaagcttattgagcaagcaagaaacaacaaa-caccacctagatccaatctaggaaacaagtgtgaaaca--aagcaact 10063107  T
Q  115 aatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    || |||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  10063106 aaacacaagataaacaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 10063013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 10065425 - 10065235
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaac- 114  Q
    |||||||||||||| ||||| |||  ||||| ||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||  |||||||     
T  10065425 gagagtggtaaccaccaaaccaagcttattgagcaagcaagaaacaacaaa-caccacctagatccaatctaggaaacaagtgtgaaaca--aagcaact 10065329  T
Q  115 aatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    || |||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  10065328 aaacacaagataaacaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 10065235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 10067624 - 10067435
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaac- 114  Q
    |||||||||||||| ||||| |||  ||||| ||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||  |||||||     
T  10067624 gagagtggtaaccaccaaaccaagcttattgagcaagcaagaaacaacaaa-caccacctagatccaatctaggaaacaagtgtgaaaca--aagcaact 10067528  T
Q  115 aatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagg 206  Q
    || |||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  10067527 aaacacaagataaacaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagg 10067435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 45283303 - 45283114
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    ||||| |||||||| |||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||| | |||| |||||||||  | |||    
T  45283303 gagagcggtaaccaccaaacaaagtgt-ttgtgcaagcaataatcaacaaaacaccacctagatctaatctaggaaactagtgagaaacacaatac-aca 45283206  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||| ||||||||||||  ||||||||||||| |||| ||||||||||||||||||||||||||| |||||    
T  45283205 atcacaagataaacaaggagagggaagaagaaaacaaaa-gcaccaagagattgttcactcagttcggtccaaacttgacctactctggagga 45283114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 54635440 - 54635252
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| |||||||||||| | |||||||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||  | |||    
T  54635440 gagagtggtaaccaccaaacaaagtgtgt-gtgcaagcaataatcaacaaaacaccacctagatctaatctaggaaacaagtgagaaacacaatac-aca 54635343  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacacc-aagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||||  |||||||||||| ||||||||||||  |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  54635342 atcacaagataa--aaggagagggaagaagaaaacaaaa-gcaccaaagagattgttcacccagttcggtccaaacttgacctactctggagga 54635252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 6716811 - 6716627
Alignment:
Q  22 ggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaac-aaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaacaatcac 120  Q
    |||||||| |||||||||||| | |||||||||| || |||| |||||||||||||||||||||||||||| |||||||||||| ||||   ||||||||    
T  6716811 ggtaaccaccaaacaaagtgtgt-gtgcaagcaataatcaaccaaaacaccacctagatctaatctaggaaacaagtgtgaaactcaaaaatacaatcac 6716713  T
Q  121 aagataaacaaggagagggaa-aagaaaacaaaatacacc-aagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||  |||| ||||||| ||||||||||||  |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  6716712 aagataa--aaggggagggaagaagaaaacaaaa-gcaccaaagagattgttcacccagttcggtccaaacttgacctactctggagga 6716627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 7779858 - 7780044
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaa-caccacctagatctaatctaggaaccaagtgtgaaa-cacaaagcaa 113  Q
    |||||||||||||| ||| ||||||||   |||||||||| || |||||||| || ||||||||||||||||||||| ||||||  ||| |||||  ||     
T  7779858 gagagtggtaaccaccaa-caaagtgt---gtgcaagcaataatcaacaaaaacagcacctagatctaatctaggaaacaagtgaaaaaacacaataca- 7779952  T
Q  114 caatcacaagataaacaaggagagggaaaagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||| |||||||||||  ||||||||||| || |||  ||| |||||||||||||| ||||||| || ||||||||||||||||||||| |||||    
T  7779953 caagcacaagataaa--aggagagggaagaggaaaacaaagacaccaagagattgttcacccactttggtccaaacttgacctactctggagga 7780044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 801376 - 801220
Alignment:
Q  45 tgtgcaagcaagaaacaacaaaacac--cacctagatctaatctaggaaccaagtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaa- 141  Q
    ||||||||||| || |||||||| ||  ||||||||||||||||||||| |||||| |||| |||   ||| |  |||||||||||  |||||||||||     
T  801376 tgtgcaagcaataatcaacaaaaaacagcacctagatctaatctaggaaacaagtg-gaaaaaca---caata--cacaagataaa--aggagagggaag 801285  T
Q  142 aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  801284 aagaaaacaaag-acaccaagagattgttcacccagttcggtccaaacttgacctactctggagga 801220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 46 - 207
Target Start/End: Original strand, 23200020 - 23200178
Alignment:
Q  46 gtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaag-tgtgaaacacaaagcaacaatcacaagataaacaaggagagggaa-aa 143  Q
    |||||||||| || |||||| | | ||||||||||||||||||||| |||  ||  ||||||||| || ||| || ||||||||  ||||||||||| ||    
T  23200020 gtgcaagcaataatcaacaataaaacacctagatctaatctaggaaacaaaatgaaaaacacaaacca-caagcataagataaa--aggagagggaagaa 23200116  T
Q  144 gaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  23200117 gaaaacaaag-acaccaa-agattgttcacccagttcggtccaaacttgacctactctggagga 23200178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 23197823 - 23197979
Alignment:
Q  48 gcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaag-tgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaagaa 146  Q
    |||||||| || |||||| | | ||| ||||||||||||||||| |||  ||  ||||||||| || ||| |||||||||||  ||||||| ||| || |    
T  23197823 gcaagcaataatcaacaataaaacacatagatctaatctaggaaacaaaatgaaaaacacaaacca-caagcacaagataaa--aggagagagaagagga 23197919  T
Q  147 aacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||  ||| ||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  23197920 aaacaaagacaccaa-agattgttcacccagttcggtccaaacttgacctactctggagga 23197979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 19683774 - 19683921
Alignment:
Q  49 caagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaagaa 146  Q
    ||||||| || |||||| |||| |||||||||||||||||||||  || |||  ||||||||| | |||| || ||||||||  |||||||  || |||     
T  19683774 caagcaataatcaacaataacagcacctagatctaatctaggaataaaagtgaaaaacacaaaaccacaagcaaaagataaa--aggagag--aagagag 19683869  T
Q  147 aacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctact 199  Q
    ||  ||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  19683870 aaacaaacacaccaa-agattgttcacccagttcggtccaaacttgacctact 19683921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 7762437 - 7762393
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  7762437 agattgttcacccagttcggtccaaacttgacctactctggagga 7762393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 9581454 - 9581410
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  9581454 agattgttcacccagttcggtccaaacttgacctactctggagga 9581410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 9636114 - 9636158
Alignment:
Q  155 acaccaagagattggtcacccagttcggtccaaacttgacctact 199  Q
    |||||||||||||| |||||||||||||| |||||||||||||||    
T  9636114 acaccaagagattgttcacccagttcggttcaaacttgacctact 9636158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 43401789 - 43401841
Alignment:
Q  155 acaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||| |||||||||||||||||| | ||||||||||| |||||    
T  43401789 acaccaagagattgttcacccagttcggtccaaccatgacctactctggagga 43401841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 45095335 - 45095291
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  45095335 agattgttcacccagttcggtccaaacttgacctactctagagga 45095291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 37408630 - 37408586
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||    
T  37408630 agattgttcacccagttcgatccaaacttgacctactctggagga 37408586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 43403736 - 43403784
Alignment:
Q  159 caagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||| |||||||||||||||||| | ||||||||||| |||||    
T  43403736 caagagattgttcacccagttcggtccaaccatgacctactctggagga 43403784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 49199457 - 49199509
Alignment:
Q  155 acaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||| |||||||||||||||||| | ||||||| ||| |||||    
T  49199457 acaccaagagattgttcacccagttcggtccaaccatgacctagtctggagga 49199509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 5258140 - 5258178
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactct 201  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  5258140 agattgttcaccaagttcggtccaaacttgacctactct 5258178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 207
Target Start/End: Complemental strand, 7764747 - 7764592
Alignment:
Q  49 caagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaagaa 146  Q
    ||||||| || |||||| |||| |||||||||||||||| |||| ||| |||  || |||||| | |||| || ||||||||  |||||||  || |||     
T  7764747 caagcaataatcaacaataacagcacctagatctaatcttggaatcaaagtgaaaagcacaaaaccacaaacaaaagataaa--aggagag--aagagag 7764652  T
Q  147 aacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||  ||| ||||||| |||||| ||||||||||||||| ||| |||||||||||| |||||    
T  7764651 aaacaaacacaccaa-agattgttcacccagttcggtctaaatttgacctactctggagga 7764592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 5260319 - 5260355
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctact 199  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  5260319 agattgttcaccaagttcggtccaaacttgacctact 5260355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 34491383 - 34491340
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||    
T  34491383 agattgttcacccagttcggtcc-aacttgacctactctggagga 34491340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1808 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold1808
Description:

Target: scaffold1808; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 183 - 1
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  183 gagagtggtaaccacctaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagcaaca 84  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctact 199  Q
    ||||||||||  |||||||||||||| |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||    
T  83 atcacaagat--acaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctact 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 2454 - 2644
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2454 gagagtggtaaccaccaaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagtgtgaaacacaaagcaaca 2553  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||  |||||||||||||| |||||||||| | |||| || |||||| |||||||||||||||||||||||||||||||| |||||    
T  2554 atcacaagat--acaaggagagggaagaagaaaacaataaacacaaaaagattgttcacccagttcggtccaaacttgacctactctggagga 2644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 8393713 - 8393522
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8393713 gagagtggtaaccaccaaacgaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 8393614  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||| | | |||||||||| |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  8393613 atcacaagataca-atggagagggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 8393522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 8395922 - 8395731
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8395922 gagagtggtaaccaccaaacaaagtttattgtgcaagcaaaaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 8395823  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||| | | |||||||||| |||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  8395822 atcacaagataca-atggagagggaagaagaaaacaataaacacaaagagattgttcacccagttcggtccaaacttgacctactctggagga 8395731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 7125220 - 7125030
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7125220 gagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 7125121  T
Q  116 atcacaagataaacaaggagagggaaaagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||| || | |||||||||| | |||| ||||||||| |||||||||||||||    ||||||||||||| |||||    
T  7125120 atcacaagataaacaaggag-ggaagaagaaaacaataaacacaaagagattgttcacccagttcggtctttgcttgacctactctggagga 7125030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 7123001 - 7122834
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7123001 gagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 7122902  T
Q  116 atcacaagataaacaaggagagggaaaagaaaacaaaatacaccaagagattggtcacccagttcggtc 184  Q
    |||||||||||||||||||| || | |||||||||| | |||| |||| |||| |||||||||||||||    
T  7122901 atcacaagataaacaaggag-ggaagaagaaaacaataaacacaaagaaattgttcacccagttcggtc 7122834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 5136384 - 5136193
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaac- 114  Q
    |||||||||||||| |||||||||  ||||| |||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||  |||||||     
T  5136384 gagagtggtaaccaccaaacaaagcttattgagcaagcaagagacaacaaaacatcac-tagatctaatctaggaaccaagtgtgaaaca--aagcaacc 5136288  T
Q  115 -aatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
     || |||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  5136287 aaaacacaagataaacaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 5136193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 5138609 - 5138418
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaac- 114  Q
    |||||||||||||| |||||||||  ||||| |||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||  |||||||     
T  5138609 gagagtggtaaccaccaaacaaagcttattgagcaagcaagagacaacaaaacatcac-tagatctaatctaggaaccaagtgtgaaaca--aagcaacc 5138513  T
Q  115 -aatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
     || |||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  5138512 aaaacacaagataaacaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 5138418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 31495168 - 31495356
Alignment:
Q  23 gtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcaca 121  Q
    ||||||||||| |||||||| | |||||||||| || |||||||||| ||||||||||||||||||||| ||| |||  || || ||| || ||| ||||    
T  31495168 gtaaccatcaa-caaagtgtgt-gtgcaagcaataatcaacaaaacagcacctagatctaatctaggaaacaaagtgaaaagcataaaaca-caagcaca 31495264  T
Q  122 agataaac------aaggagagggaaaagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||       |||||||||||| || |||  ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  31495265 agataaaaggataaaaggagagggaagaggaaaacaaagacaccaagagattgttcacccagttcggtccaaacttgacctactctggagga 31495356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 2209894 - 2209842
Alignment:
Q  155 acaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||| |||||||||||||||||| | ||||||||||| |||||    
T  2209894 acaccaagagattgttcacccagttcggtccaaccatgacctactctggagga 2209842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 56178633 - 56178677
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  56178633 agattgttcacccagttcggtccaaacttgacctactctggagga 56178677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 5369968 - 5370123
Alignment:
Q  49 caagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaagaa 146  Q
    ||||||| || |||||| |||| ||||||||||||||||||||| ||| |||  || |||||| | |||| || ||||||||  |||||||  || |||     
T  5369968 caagcaataatcaacaataacagcacctagatctaatctaggaatcaaagtgaaaagcacaaaaccacaagcaaaagataaa--aggagag--aagagat 5370063  T
Q  147 aacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||  ||| ||| ||| |||||| |||| ||||||||||||||||||||||||||| |||||    
T  5370064 aaacaaacacatcaa-agattgttcactcagttcggtccaaacttgacctactctggagga 5370123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 29999809 - 29999846
Alignment:
Q  170 tcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||||||||||||||||| |||||    
T  29999809 tcacccagttcggtccaaacttgacctactctggagga 29999846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 13992289 - 13992333
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| ||||| |||||||||||||||||||||||||| |||||    
T  13992289 agattgttcacctagttcggtccaaacttgacctactctggagga 13992333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 48143215 - 48143171
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||    
T  48143215 agattgttcacccagtttggtccaaacttgacctactctggagga 48143171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 50262689 - 50262741
Alignment:
Q  155 acaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||| ||||||||||||||||||   ||||||||||| |||||    
T  50262689 acaccaagagattgttcacccagttcggtccaacaatgacctactctggagga 50262741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 6593 - 6401
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||    
T  6593 gagagtggtaaccaccaaacaaagtttattgtgcaagcaagaaacaacaatacaccacctagatccaatctaggaaacaagtgtgaaacacaaagcaaca 6494  T
Q  116 atcacaagat-aaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||| |||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  6493 atcacaagataaaacaaggagagggaagaagaaaacaata-acacaaagagattggtcacccagttcggtccaaacttaacctactctggagga 6401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 15290842 - 15290652
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||  ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15290842 gagagtggtaaccacctaacaaagcttattgagcaagcaagaaacaacaatacaccacctagatcgaatctaggaaccaagtgtgaaacacaaagcaaca 15290743  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||  |||||||||||||| |||||||||| | |||| |||||||||| ||||||||||||||||||||||||||||||| |||||    
T  15290742 atcacaagat--acaaggagagggaagaagaaaacaataaacacaaagagattggacacccagttcggtccaaacttgacctactctggagga 15290652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 15471211 - 15471021
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| | |||||||  ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15471211 gagagtggtaaccacctaacaaagcttattgagcaagcaagaaacaacaatacaccacctagatcgaatctaggaaccaagtgtgaaacacaaagcaaca 15471112  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||  |||||||||||||| |||||||||| | |||| |||||||||| ||||||||||||||||||||||||||||||| |||||    
T  15471111 atcacaagat--acaaggagagggaagaagaaaacaataaacacaaagagattggacacccagttcggtccaaacttgacctactctggagga 15471021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 42575175 - 42575364
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaa-c 114  Q
    |||||||||||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  ||||||||| |    
T  42575175 gagagtggtaaccaccaaacaaagcttattgagcaagcaagaaacaacaaaacaccacctagatccaatctaggaaacaagtgtgaa--acaaagcaacc 42575272  T
Q  115 aatcacaagataaacaaggagagggaa-aagaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    || ||||||||  |||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  42575273 aaacacaagat--acaaggagagggaagaagaaaacaataaacacaaagagattggtcacccagttcggtccaaacttgacctactctggagga 42575364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 25690271 - 25690082
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    |||||||||||||| |||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| | |||    
T  25690271 gagagtggtaaccaccaaacaaagtgtgt-gtgcaagcaagaatcaacaaaacaccacctagatctaatctaggaaacaagtgagaaacacaaaac-aca 25690174  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacacc-aagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
     |||||||||||  |||| ||||||| |||||||||| | ||||| ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  25690173 ctcacaagataa--aaggggagggaagaagaaaacaacaaacaccaaagagattgttcacccagttcggtccaaacttgacctactctggagga 25690082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 3439817 - 3439631
Alignment:
Q  16 gagagtggtaaccatcaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaaca 115  Q
    ||||| |||||||| ||||||||||||   |||||||||| || |||||||||||||||||||||||||||||||| |||||| ||||| |||| | |||    
T  3439817 gagagcggtaaccaccaaacaaagtgt---gtgcaagcaacaatcaacaaaacaccacctagatctaatctaggaaacaagtgagaaactcaaaac-aca 3439722  T
Q  116 atcacaagataaacaaggagagggaa-aagaaaacaaaatacacc-aagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    ||||||||||||  |||||||||||| ||||||||||||  |||| ||||||||| ||| |||||||||||||||||||||||||||| |||||    
T  3439721 atcacaagataa--aaggagagggaagaagaaaacaaaa-gcaccaaagagattgttcatccagttcggtccaaacttgacctactctggagga 3439631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 2628024 - 2627864
Alignment:
Q  46 gtgcaagcaagaaa-caacaa-aacaccacctagatctaatctaggaaccaagtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaa 143  Q
    |||||||||| ||| |||||| |||| ||||||||||||||||||||| ||||||  || || ||| || ||| |||||||||||  ||||||||||| |    
T  2628024 gtgcaagcaaaaaatcaacaataacaacacctagatctaatctaggaaacaagtgaaaagcataaaaca-caagcacaagataaa--aggagagggaaga 2627928  T
Q  144 gaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    | |||  ||| |||||||||||||  |||||||||||||||||||||||||||||||| |||||    
T  2627927 ggaaaacaaagacaccaagagattattcacccagttcggtccaaacttgacctactctggagga 2627864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 207
Target Start/End: Complemental strand, 31218541 - 31218385
Alignment:
Q  47 tgcaagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaag 144  Q
    ||||||||| || |||||| |||| ||||||||||||||||||||| ||| |||  || |||||| ||  || |||||||||||  |||||||  || ||    
T  31218541 tgcaagcaataatcaacaataacagcacctagatctaatctaggaaacaaagtgaaaagcacaaaacat-aagcacaagataaa--aggagag--aagag 31218447  T
Q  145 aaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    | ||  ||| ||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  31218446 agaaacaaacacaccaa-agattgttcacccagttcggtccaaacttgacctactctggagga 31218385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 42498459 - 42498322
Alignment:
Q  66 aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaagaaaacaaaatacaccaagag 164  Q
    |||| ||||||||||||||||||||| ||| |||  ||||||||| | |||| || ||||||||  |||||||  || ||  ||  ||| ||||||| ||    
T  42498459 aacaacacctagatctaatctaggaatcaaagtgaaaaacacaaaaccacaagcaaaagataaa--aggagag--aagagggaaacaaacacaccaa-ag 42498365  T
Q  165 attggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||| |||||||||||||||||||||||||||||||| |||||    
T  42498364 attgttcacccagttcggtccaaacttgacctactctggagga 42498322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 17982825 - 17982781
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  17982825 agattgttcacccagttcggtccaaacttgacctactctggagga 17982781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 19945355 - 19945399
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||| |||||||||||||||||||||||    
T  19945355 agattgttcacccagttcggttcaaacttgacctactctcgagga 19945399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 34254327 - 34254371
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  34254327 agattgttcacccagttcggtccaaacttgacctactctagagga 34254371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 34256503 - 34256547
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  34256503 agattgttcacccagttcggtccaaacttgacctactctagagga 34256547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 1746216 - 1746251
Alignment:
Q  164 gattggtcacccagttcggtccaaacttgacctact 199  Q
    ||||| ||||||||||||||||||||||||||||||    
T  1746216 gattgttcacccagttcggtccaaacttgacctact 1746251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 32902096 - 32902133
Alignment:
Q  72 acctagatctaatctaggaaccaagtgtgaaacacaaa 109  Q
    |||||||||||||||||||||||||||  |||||||||    
T  32902096 acctagatctaatctaggaaccaagtgaaaaacacaaa 32902133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 44304027 - 44303983
Alignment:
Q  163 agattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||| ||||| |||||| ||||||||||||||||||| |||||    
T  44304027 agattgttcacctagttcgatccaaacttgacctactctggagga 44303983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 46 - 207
Target Start/End: Original strand, 11042 - 11201
Alignment:
Q  46 gtgcaagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaa 143  Q
    |||||||||| || |||||| |||| ||||||||||||||||||||| ||| |||  ||||||||| || ||| |||||||||||  ||||||||||| |    
T  11042 gtgcaagcaataatcaacaataacaacacctagatctaatctaggaaacaaagtgaaaaacacaaacca-caagcacaagataaa--aggagagggaaga 11138  T
Q  144 gaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    | |||  ||| ||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  11139 ggaaaacaaagacaccaa-agattgttcacccagttcggtccaaacttgacctactctggagga 11201  T

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Target: scaffold0491; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 46 - 207
Target Start/End: Original strand, 8616 - 8775
Alignment:
Q  46 gtgcaagcaagaaacaacaa-aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaa 143  Q
    |||||||||| || |||||| |||| ||||||||||||||||||||| ||| |||  || |||||| || ||| |||||||||||  || |||||||| |    
T  8616 gtgcaagcaataatcaacaataacaacacctagatctaatctaggaaacaaagtgaaaagcacaaacca-caagcacaagataaa--agaagagggaaga 8712  T
Q  144 gaaaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    | |||  ||| ||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  8713 ggaaaacaaagacaccaa-agattgttcacccagttcggtccaaacttgacctactctggagga 8775  T

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Target: scaffold0286 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 11741 - 11685
Alignment:
Q  151 aaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  11741 aaatacaccaagagattgttcacccagttcggtccaaacttgacctactctggagga 11685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 1103 - 1043
Alignment:
Q  146 aaacaaaatacaccaagagattggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  1103 aaacaaaacacaccaa-agattgttcacccagttcggtccaaacttgacctactctggagga 1043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 434798 - 434661
Alignment:
Q  66 aacaccacctagatctaatctaggaaccaa-gtgtgaaacacaaagcaacaatcacaagataaacaaggagagggaaaagaaaacaaaatacaccaagag 164  Q
    |||| ||||||||||||||||||||| ||| |||  || |||||| || ||| |||||||||||  ||| ||| ||| ||| ||  ||| ||||||| |     
T  434798 aacagcacctagatctaatctaggaatcaaagtgaaaagcacaaaaca-caagcacaagataaa--agg-gagagaagagagaaacaaacacaccaa-at 434704  T
Q  165 attggtcacccagttcggtccaaacttgacctactctcgagga 207  Q
    |||| |||||||||||||||||||||||||||||||| |||||    
T  434703 attgttcacccagttcggtccaaacttgacctactctggagga 434661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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