View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18605_low_7 (Length: 435)
Name: NF18605_low_7
Description: NF18605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18605_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 2176124 - 2176388
Alignment:
| Q |
18 |
agttgatatatatcttcttaccttgccattnnnnnnnn-gccttacgaacctctgataaaaactttctaccacataactgaaaattatctatgtataaaa |
116 |
Q |
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| T |
2176124 |
agttgatatatatcttcttaccttgccattaaaaaaaaagccttgcgaacctctgataaaaactttctaccacataactgaaaattatctatgtataaaa |
2176223 |
T |
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| Q |
117 |
cgctcaagaagggaagccttccctaaaaaataacatgcttttgtcaaaccaaatcattcagatcatcataaatagaaagttggccaattccattgcccag |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176224 |
cgctcaagaagggaagccttccctaaaaaataacaggcttttgtcaaaccaaatcattcagatcatcataaatagaaagttggccaattccattgcccag |
2176323 |
T |
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| Q |
217 |
ttccaatgtcaagaaaatcaataattaactgattgactcgaataaattgttcttagaagtaaaac |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176324 |
ttccaatgtcaagaaaatcaataattaactgattgactcgaataaattgttcttagaagtaaaac |
2176388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 346 - 435
Target Start/End: Original strand, 2176453 - 2176542
Alignment:
| Q |
346 |
agttagatgttgaaaatacaaattatcagtcannnnnnnatgttgctaaaactactttcatattgaaattgataagatatcaaattagca |
435 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176453 |
agttagatgttgaaaagacaaattatcagtcatttttttatgttgctaaaactactttcatattgaaattgataagatatcaaattagca |
2176542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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