View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18605_low_8 (Length: 403)
Name: NF18605_low_8
Description: NF18605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18605_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 203 - 394
Target Start/End: Complemental strand, 1426677 - 1426486
Alignment:
| Q |
203 |
tagaagaacattgaagtgttgcaaatctagactaacctgaacaataccagagtattgggaaataactatagtaatgttaggaagagttatatgaataggc |
302 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1426677 |
tagaagaacattgaagagttgaaaatctagactaacctgaacaataccagagtattgggaaataactatagtaatgttaggaagagttatatgaataggc |
1426578 |
T |
|
| Q |
303 |
ttaatataatgaaaacttgtaatagtattcttggtgcaagtgaaatggtgtgtggtgctagtgtcaaggatccaaatattcgaattgatatt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1426577 |
ttaatataatgaaaacttgtaatagtattcttggtgcaagtgaaatggtgtgtggtgctagtgtcaaggatccaaatattcgaattgatatt |
1426486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 1426879 - 1426708
Alignment:
| Q |
17 |
atttccaagaaagttacgtttgcattaagatcctaagaattggccaattattttcagttacttgtgacagcaggttgtatattatgactatcaattttac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1426879 |
atttccaagaaagttacgtttgcattaagatcctaagaattggccaattattttcagttacttgtgacagcaggttgtatattatgactatcaattttac |
1426780 |
T |
|
| Q |
117 |
gtattatcatcttccatatgcataggggtgacactgacataacattatgtctctatataactcatggaagttag |
190 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1426779 |
gtattatcatcttcc--atgcataggggtgacactgacataacattatgtccctatataactcatggaagttag |
1426708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University