View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18605_low_9 (Length: 391)

Name: NF18605_low_9
Description: NF18605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18605_low_9
NF18605_low_9
[»] chr6 (4 HSPs)
chr6 (119-318)||(1697992-1698191)
chr6 (119-280)||(1689899-1690057)
chr6 (124-190)||(1316906-1316972)
chr6 (328-362)||(1697942-1697976)
[»] chr4 (2 HSPs)
chr4 (142-204)||(18094125-18094187)
chr4 (123-191)||(37014501-37014570)
[»] chr2 (4 HSPs)
chr2 (142-204)||(37851730-37851792)
chr2 (124-184)||(25724918-25724979)
chr2 (131-187)||(39819583-39819638)
chr2 (131-183)||(41298043-41298095)
[»] chr5 (2 HSPs)
chr5 (124-185)||(35348642-35348703)
chr5 (124-177)||(6930541-6930594)
[»] chr1 (3 HSPs)
chr1 (125-190)||(37436739-37436804)
chr1 (131-190)||(13653739-13653798)
chr1 (131-185)||(30240903-30240957)
[»] chr7 (2 HSPs)
chr7 (136-204)||(43446013-43446081)
chr7 (142-185)||(38528841-38528884)
[»] scaffold0006 (1 HSPs)
scaffold0006 (131-190)||(143500-143559)
[»] chr8 (3 HSPs)
chr8 (124-190)||(6805740-6805807)
chr8 (125-187)||(15226855-15226917)
chr8 (124-185)||(29421606-29421668)
[»] chr3 (2 HSPs)
chr3 (130-191)||(27823160-27823221)
chr3 (126-182)||(28770329-28770386)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 119 - 318
Target Start/End: Complemental strand, 1698191 - 1697992
Alignment:
Q  119 gaggaggaatagaaaaatttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaaatcatgattaactacctataaacttttttgtgt 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||     
T  1698191 gaggaggaatagaaaaatttccgaaagaaaatggtgagggtaaatttctcataaagatgagaataaaatcatgattaaccacctataaacttttttgtgc 1698092  T
Q  219 ggtgaaaatacggaaccaaaaactcaaaacataatagaaagacctatgaataacattttcagtataatcactcaaaagagtgtgcgagattcttcttctt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1698091 ggtgaaaatacggaaccaaaaactcaaaacataatagaaagacctatgaataacattttcagtataatcactcaaaagagtgtgcgagattcttcttctt 1697992  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 280
Target Start/End: Complemental strand, 1690057 - 1689899
Alignment:
Q  119 gaggaggaatagaaaaatttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaaatcatgattaactacctataaacttttttgtgt 218  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||  |||| | | | |||||||||||      
T  1690057 gaggaagaatagaaaaatttccgaaagaaaatggtgagggtaaatttct---gaagatgagaataaaatcatgagcaactccttgttaacttttttgtta 1689961  T
Q  219 ggtgaaaatacggaaccaaaaactcaaaacataatagaaagacctatgaataacattttcag 280  Q
    |||| ||||||| ||||||| |||||||||||| ||| ||||  ||||||||||||||||||    
T  1689960 ggtggaaatacgaaaccaaagactcaaaacatagtaggaagatatatgaataacattttcag 1689899  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 1316972 - 1316906
Alignment:
Q  124 ggaatagaaaaatttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaaatcat 190  Q
    ||||||||||||||||| || ||||| |||| || |||| ||| |||||||||| ||||||| ||||    
T  1316972 ggaatagaaaaatttcccaaggaaaagggtgggaataaagttcccatgaagatgggaataaattcat 1316906  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 362
Target Start/End: Complemental strand, 1697976 - 1697942
Alignment:
Q  328 gagtgcgagataaagtcactggaggaagaagctga 362  Q
    |||||||||||||||||||| ||||||||||||||    
T  1697976 gagtgcgagataaagtcactagaggaagaagctga 1697942  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 18094187 - 18094125
Alignment:
Q  142 aaagaaaatggtgagagtaaatttctcatgaagatgagaataaaatcatgattaactacctat 204  Q
    |||||||||||||||| |||| ||| |||||||||||||||||| |||||  |||||||||||    
T  18094187 aaagaaaatggtgagaataaagttcccatgaagatgagaataaattcatgtgtaactacctat 18094125  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 37014501 - 37014570
Alignment:
Q  123 aggaatagaaaaa-tttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaaatcatg 191  Q
    ||||||||||||| ||||| ||||||||  |||  | |||| |||||||||||||||||||||| |||||    
T  37014501 aggaatagaaaaaatttcccaaagaaaagagtggaaataaagttctcatgaagatgagaataaattcatg 37014570  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 37851792 - 37851730
Alignment:
Q  142 aaagaaaatggtgagagtaaatttctcatgaagatgagaataaaatcatgattaactacctat 204  Q
    |||||||||||||||| |||| ||| |||||||||||||||||| |||||  |||||||||||    
T  37851792 aaagaaaatggtgagaataaagttcccatgaagatgagaataaattcatgtgtaactacctat 37851730  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 25724979 - 25724918
Alignment:
Q  124 ggaatagaaaaa-tttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataa 184  Q
    |||||||||||| ||||| |||||||| |||| || |||| |||||||||||||||||||||    
T  25724979 ggaatagaaaaagtttcccaaagaaaagggtgggaataaagttctcatgaagatgagaataa 25724918  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 39819638 - 39819583
Alignment:
Q  131 aaaaatttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaaat 187  Q
    |||||||||| ||||||||||||| || |||| ||||||||||||||||| ||||||    
T  39819638 aaaaatttcc-aaagaaaatggtgggaataaagttctcatgaagatgagagtaaaat 39819583  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 41298043 - 41298095
Alignment:
Q  131 aaaaatttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaata 183  Q
    |||||||||| |||| ||| |||| || |||| ||||||||||||||||||||    
T  41298043 aaaaatttcccaaagcaaagggtgtgaataaagttctcatgaagatgagaata 41298095  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 35348642 - 35348703
Alignment:
Q  124 ggaatagaaaaatttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaa 185  Q
    ||||||||||| ||||| |||||||| |||| || |||| ||| ||||||||||||||||||    
T  35348642 ggaatagaaaattttcccaaagaaaagggtgggaataaagttcccatgaagatgagaataaa 35348703  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 6930594 - 6930541
Alignment:
Q  124 ggaatagaaaaatttccgaaagaaaatggtgagagtaaatttctcatgaagatg 177  Q
    ||||||||||||||||| ||||||||| ||| || |||| ||| ||||||||||    
T  6930594 ggaatagaaaaatttcccaaagaaaattgtgggaataaagttcccatgaagatg 6930541  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 37436739 - 37436804
Alignment:
Q  125 gaatagaaaaatttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaaatcat 190  Q
    |||||||||| ||||| |||||||| ||||||| |||| ||| |||| ||||||||||||| ||||    
T  37436739 gaatagaaaattttcccaaagaaaagggtgagaataaagttcccatggagatgagaataaattcat 37436804  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 13653798 - 13653739
Alignment:
Q  131 aaaaatttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaaatcat 190  Q
    |||||||||| ||||||||||||| || |||| ||| |||| ||||||||||||| ||||    
T  13653798 aaaaatttcccaaagaaaatggtgggaataaagttcccatggagatgagaataaattcat 13653739  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 30240957 - 30240903
Alignment:
Q  131 aaaaatttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaa 185  Q
    ||||| |||| ||||||||  |||||| |||| ||||||||||||||||||||||    
T  30240957 aaaaaattcccaaagaaaagagtgagaataaagttctcatgaagatgagaataaa 30240903  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 43446013 - 43446081
Alignment:
Q  136 tttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaaatcatgattaactacctat 204  Q
    ||||| ||||||||||||| || |||| |||||||| ||||||||||||||| |||  ||| |||||||    
T  43446013 tttcccaaagaaaatggtgggaataaagttctcatggagatgagaataaaattatgtgtaattacctat 43446081  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 38528841 - 38528884
Alignment:
Q  142 aaagaaaatggtgagagtaaatttctcatgaagatgagaataaa 185  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||    
T  38528841 aaagaaaaaggtgagaataaagttctcatgaagatgagaataaa 38528884  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 143559 - 143500
Alignment:
Q  131 aaaaatttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaaatcat 190  Q
    |||||||||| ||||||||||||| || |||| ||| |||| ||||||||||||| ||||    
T  143559 aaaaatttcccaaagaaaatggtgggaataaagttcccatggagatgagaataaattcat 143500  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 6805740 - 6805807
Alignment:
Q  124 ggaatagaaaaattt-ccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaaatcat 190  Q
    ||||||||||| ||| || |||||||| ||||||| |||| |||||||| ||||||||||||| ||||    
T  6805740 ggaatagaaaatttttcctaaagaaaagggtgagaataaagttctcatggagatgagaataaattcat 6805807  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 15226917 - 15226855
Alignment:
Q  125 gaatagaaaaatttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaaat 187  Q
    ||||||||||  |||| |||||||| |||| || |||| ||| ||||||||||||||||||||    
T  15226917 gaatagaaaagattcccaaagaaaagggtgggaataaagttcccatgaagatgagaataaaat 15226855  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 29421606 - 29421668
Alignment:
Q  124 ggaatagaaaaattt-ccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaa 185  Q
    ||||||||||||||| || ||||||||||||| || |||| ||| |||| |||||||||||||    
T  29421606 ggaatagaaaaattttcccaaagaaaatggtgggaataaagttcccatggagatgagaataaa 29421668  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 27823221 - 27823160
Alignment:
Q  130 gaaaaatttccgaaagaaaatggtgagagtaaatttctcatgaagatgagaataaaatcatg 191  Q
    ||||| ||||| |||||||| |||| || |||| |||||||||||||||||| ||| |||||    
T  27823221 gaaaattttcccaaagaaaagggtgggaataaaattctcatgaagatgagaacaaattcatg 27823160  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 28770329 - 28770386
Alignment:
Q  126 aatagaaaaattt-ccgaaagaaaatggtgagagtaaatttctcatgaagatgagaat 182  Q
    ||||||||||||| || ||||||||||||| || |||| |||||||||||||| ||||    
T  28770329 aatagaaaaattttcccaaagaaaatggtgggaataaagttctcatgaagatgggaat 28770386  T

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