View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18606_high_15 (Length: 252)

Name: NF18606_high_15
Description: NF18606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18606_high_15
NF18606_high_15
[»] chr5 (10 HSPs)
chr5 (1-243)||(13373112-13373354)
chr5 (1-244)||(13378908-13379151)
chr5 (1-166)||(13385391-13385556)
chr5 (3-222)||(13419372-13419591)
chr5 (1-233)||(13446921-13447153)
chr5 (3-89)||(13413027-13413113)
chr5 (1-166)||(13389212-13389377)
chr5 (1-233)||(13393552-13393784)
chr5 (3-233)||(13453876-13454106)
chr5 (1-222)||(13426261-13426482)
[»] chr8 (1 HSPs)
chr8 (1-244)||(28430517-28430760)
[»] chr4 (1 HSPs)
chr4 (1-151)||(47601192-47601342)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 13373112 - 13373354
Alignment:
Q  1 caaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagg 100  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13373112 caaaagctttggtaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagg 13373211  T
Q  101 gctatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcaagaagtgttcgtcggcaaccatggta 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  13373212 gctatatactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcacgaagtgttcgtgggcaaccatggta 13373311  T
Q  201 tcagagtagcctccatatgtgattgttccatcaatattcttgg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13373312 tcagagtagcctccatatgtgattgttccatcaatattcttgg 13373354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 13378908 - 13379151
Alignment:
Q  1 caaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagg 100  Q
    |||| |||||| | || ||||||||||||||||||||||||||||||||||||||||| | ||| |  ||||| |||| || |||||||| |||||  ||    
T  13378908 caaaggctttggcgaacttcacagccatatgacctaatccaccaagaccaaccacacctatatgcagtccaggtttgtcaaatccaaaatgtttcattgg 13379007  T
Q  101 gctatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcaagaagtgttcgtcggcaaccatggta 200  Q
    |||||||||||||||||| |||||||| |||||||| || |||||||||| ||||||||| ||||||||||  |  |||||||||||| ||||||||||     
T  13379008 gctatacactgtgatcccagcacaaaggagaggagcggcagcatcaagtgataaggcatcgggaatacggacaataaagtgttcgtcgacaaccatggtg 13379107  T
Q  201 tcagagtagcctccatatgtgattgttccatcaatattcttgga 244  Q
    ||||||||||||||||||||||| || ||||||| |||||||||    
T  13379108 tcagagtagcctccatatgtgatagtgccatcaacattcttgga 13379151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 13385556 - 13385391
Alignment:
Q  1 caaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagg 100  Q
    ||||||||||| |||||||||||||||| ||||| |  |||||||||||||| ||||| ||||| | |||||| ||||  |||||||| ||| | | |||    
T  13385556 caaaagctttggcaaatttcacagccatgtgaccaagcccaccaagaccaacaacaccgacatgaagaccaggtttgtcgagtccaaagtatctaagagg 13385457  T
Q  101 gctatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaat 166  Q
     || ||||| |||||||| |||||||| ||||| ||||| || |||||||||||  ||||||||||    
T  13385456 actgtacacagtgatcccagcacaaaggagaggtgcagcagcttcaagtggtaatccatcaggaat 13385391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 13419372 - 13419591
Alignment:
Q  3 aaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagggc 102  Q
    ||||||||  ||||||||||||||||||| || | ||||||||||||||| ||||| | ||  | |||||||||||  ||| |||||| |   | ||| |    
T  13419372 aaagcttttgcaaatttcacagccatatggccaagtccaccaagaccaacaacacctatattcataccaggcttgtcgagttcaaaatgtcgaagaggac 13419471  T
Q  103 tatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcaagaagtgttcgtcggcaaccatggtatc 202  Q
    ||||||||||||| || || |||||||||||| | || |||||||| ||||||  ||||||||| || ||||  ||||| ||||| |||||||| |  ||    
T  13419472 tatacactgtgattccagcgcaaagaagaggaccggcagcatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtc 13419571  T
Q  203 agagtagcctccatatgtga 222  Q
     ||||| |||||||||||||    
T  13419572 ggagtaacctccatatgtga 13419591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 13446921 - 13447153
Alignment:
Q  1 caaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagg 100  Q
    ||||||||||  |||||||||||||||||||||| | ||||||||||||||| || || | ||  | |||||||||||  |||||||||| |   | |||    
T  13446921 caaaagctttagcaaatttcacagccatatgaccaagtccaccaagaccaacaactcctatattcataccaggcttgtcgagtccaaaatgtcgaagagg 13447020  T
Q  101 gctatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcaagaagtgttcgtcggcaaccatggta 200  Q
     |||||||||||||  || || |||||||||||| | ||  ||||||| ||||||  ||||||||| || ||||  ||||| ||||| |||||||| |      
T  13447021 actatacactgtgactccagcgcaaagaagaggaccggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgag 13447120  T
Q  201 tcagagtagcctccatatgtgattgttccatca 233  Q
    || ||| | |||||||| ||||| || ||||||    
T  13447121 tcggagaaacctccataggtgatagtgccatca 13447153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 13413027 - 13413113
Alignment:
Q  3 aaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaa 89  Q
    ||||||||| ||||||||||||||||||| || | ||||||||||||||| ||||| | ||||||||||||||| |  |||||||||    
T  13413027 aaagctttggcaaatttcacagccatatggccaagtccaccaagaccaacaacacctatatgtaaaccaggcttatcgagtccaaaa 13413113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 13389377 - 13389212
Alignment:
Q  1 caaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagg 100  Q
    |||| |||||| |||||||||||||||| ||||| |  |||||||||||||| ||||| | | | | |||||| || |  |||||| ||||| | | |||    
T  13389377 caaatgctttggcaaatttcacagccatgtgaccaagcccaccaagaccaacaacacctatacgaagaccaggtttatcgagtccataatatctaagagg 13389278  T
Q  101 gctatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaat 166  Q
     || ||||| |||||||| |||||||| ||||| ||||| || |||||||||||  ||||||||||    
T  13389277 actgtacacagtgatcccagcacaaaggagaggtgcagcagcttcaagtggtaatccatcaggaat 13389212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 13393784 - 13393552
Alignment:
Q  1 caaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagg 100  Q
    ||||||||||  |||| |||||| |||  ||||| | ||||||||||||||| | ||| | ||  | |||||||||||  ||||||||||||   | |||    
T  13393784 caaaagcttttgcaaacttcacacccaagtgaccaagtccaccaagaccaacaatacctatattcataccaggcttgtcgagtccaaaatatcgaagagg 13393685  T
Q  101 gctatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcaagaagtgttcgtcggcaaccatggta 200  Q
     |||||||| || || || |||||||| ||||||||||| |  |||||||||||| ||||||||||  | |  |  ||||| || || |||||||| |      
T  13393684 actatacacagtaataccggcacaaaggagaggagcagcagattcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgag 13393585  T
Q  201 tcagagtagcctccatatgtgattgttccatca 233  Q
    |||||||| ||||||||||||||  ||||||||    
T  13393584 tcagagtaccctccatatgtgatgcttccatca 13393552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 13453876 - 13454106
Alignment:
Q  3 aaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagggc 102  Q
    ||||||||| | |||||||| |||||||| || | ||||||||||||||| ||||| | ||  | | |||||||||  |||||||||| |   | ||| |    
T  13453876 aaagctttggcgaatttcacggccatatggccaagtccaccaagaccaacaacacctatattcatatcaggcttgtcgagtccaaaatgtcgaagaggac 13453975  T
Q  103 tatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcaagaagtgttcgtcggcaaccatggtatc 202  Q
    |||| || || ||||| |||||||| ||||||||||| |||||||| |||||   ||| ||||| || | ||  ||||| ||||||| |||||| |  ||    
T  13453976 tatatacggttatcccagcacaaaggagaggagcagctgcatcaagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaaaccattgagtc 13454075  T
Q  203 agagtagcctccatatgtgattgttccatca 233  Q
    |||| |||||||||  ||| | |||||||||    
T  13454076 agagaagcctccatgagtgctggttccatca 13454106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13426261 - 13426482
Alignment:
Q  1 caaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagg 100  Q
    ||||||||||| | |||||||||||||||||||| | ||||||||||||||| || || | ||  | |||||||||||  |||  |||||     | |||    
T  13426261 caaaagctttggcgaatttcacagccatatgaccaagtccaccaagaccaacaacgcctatattcataccaggcttgtcgagttgaaaatgacgaagagg 13426360  T
Q  101 gctatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcaagaagtgttcgtcggcaaccatggta 200  Q
     |||||||||||||  || || |||||||||||| | ||  ||||||| ||||||  ||||||||| || ||||  ||||| || || |||||||| |      
T  13426361 actatacactgtgactccagcgcaaagaagaggaccggcaacatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattgag 13426460  T
Q  201 tcagagtagcctccatatgtga 222  Q
    || || || |||||||||||||    
T  13426461 tcggaataacctccatatgtga 13426482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 28430760 - 28430517
Alignment:
Q  1 caaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagg 100  Q
    ||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| |  || ||   ||| || | |||||||||||||||||||||    
T  28430760 caaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaatatttcaaagg 28430661  T
Q  101 gctatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcaagaagtgttcgtcggcaaccatggta 200  Q
    ||||||||| |||||||| || || || |||||||| || |||||||| |||| |  ||  ||||| | |||||  |||  ||||||||  ||||| ||     
T  28430660 gctatacaccgtgatcccggcgcagaggagaggagctgcagcatcaagaggtaggctatttggaatgctgatcacaaagctttcgtcggtgaccattgtg 28430561  T
Q  201 tcagagtagcctccatatgtgattgttccatcaatattcttgga 244  Q
    || |||||||||||||||||||| || ||||||| |||||||||    
T  28430560 tcggagtagcctccatatgtgatggtgccatcaagattcttgga 28430517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 47601192 - 47601342
Alignment:
Q  1 caaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatatttcaaagg 100  Q
    ||||||||||  |||| || |||||||| ||||| | ||||||||||||||| ||||| | ||| | |||||| || |  ||||||||||||   | |||    
T  47601192 caaaagctttagcaaacttaacagccatgtgaccaagtccaccaagaccaacaacacctatatgcataccaggtttatcgagtccaaaatatcgaagagg 47601291  T
Q  101 gctatacactgtgatccccgcacaaagaagaggagcagcggcatcaagtgg 151  Q
     |||||||||||||| || |||||||||||||||||||  || ||||||||    
T  47601292 actatacactgtgataccggcacaaagaagaggagcagtagcttcaagtgg 47601342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University