View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18606_high_4 (Length: 461)
Name: NF18606_high_4
Description: NF18606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18606_high_4 |
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| [»] chr8 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold1157 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 17 - 461
Target Start/End: Original strand, 26368397 - 26368841
Alignment:
| Q |
17 |
attaactattaacgaagtcaatgcaatacattttgaaactgcatcactaatgattggttaaataaacaaaacataataaacttacacttagaagattctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26368397 |
attaactattaacgaagtcaatgcaatacattttgaaactgcatcactaatgattggttaaataaacaaaacataataaacttacacttagaagattctt |
26368496 |
T |
|
| Q |
117 |
cagaagagaagcaatattaatcactaggtataatgtgattccagaaagcattgctatgaaggggtaactttgcaaaagaggaatggataacacctatata |
216 |
Q |
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| T |
26368497 |
cagaagagaagcaatattaatcactaggtataatgtgattccagaaagcattgctatgaaggggtaactttgcaaaagaggaatggataacacctatata |
26368596 |
T |
|
| Q |
217 |
aaggtgacaaaatagcaagacaatttcagaacaagaaacaatgtaatattgagttgcattaaccactatgaatggtgaaatattaccccggagatgcgag |
316 |
Q |
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| T |
26368597 |
aaggtgacaaaatagcaagacaatttcagaacaagaaacaatgtaatattgagttgcattaaccactatgaatggtgaaatattaccccggagatgcgag |
26368696 |
T |
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| Q |
317 |
caaatcttacaggtccaaaagttttttctaatgatgggtacaaggaaagttggtagacaataagaccaatacctgaccattgatcattggagaagagctc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26368697 |
caaatcttacaggtccaaaagttttttctaatgatgggtacaaggaaagttggtagacaataagaccaatacctgaccattgatcattggagaagagctc |
26368796 |
T |
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| Q |
417 |
aataattaagcattatatcttgtgaaatgaatgcacaaaataaag |
461 |
Q |
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| T |
26368797 |
aataattaagcattatatcttgtgaaatgaatgcacaaaataaag |
26368841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 16587367 - 16587446
Alignment:
| Q |
124 |
gaagcaatattaatcactaggtataatgtgattccagaaagcattgctatgaaggggtaactttgcaaaagaggaatgga |
203 |
Q |
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| T |
16587367 |
gaagcaatactaatcacaatgtataaggttattcctgataacattgctatgaaggggtaactttgcaaaagtggtatgga |
16587446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 16568653 - 16568723
Alignment:
| Q |
124 |
gaagcaatattaatcactaggtataatgtgattccagaaagcattgctatgaaggggtaactttgcaaaag |
194 |
Q |
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| T |
16568653 |
gaagcaatactaatcacaatgtataaggttatgccagacaacattgctatgaaggggtaactttgcaaaag |
16568723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 16527060 - 16527128
Alignment:
| Q |
123 |
agaagcaatattaatcactaggtataatgtgattccagaaagcattgctatgaaggggtaactttgcaa |
191 |
Q |
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| T |
16527060 |
agaagcaatactaatcactatatataaggttatgcctgacaacattgctatgaaggggtaactttgcaa |
16527128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 25 - 461
Target Start/End: Complemental strand, 2609346 - 2608911
Alignment:
| Q |
25 |
ttaacgaagtcaatgcaatacattttgaaactgcatcactaatgattggttaaataaacaaaacataataaacttacacttagaagattcttcagaagag |
124 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| |
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| T |
2609346 |
ttaatgaagtcaatgcaatacatttagaaactgcatcactaatgattggttaaataaacaaaacacaataaacttacactgagaatattcttcagaagag |
2609247 |
T |
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| Q |
125 |
aagcaatattaatcactaggtataatgtgattccagaaagcattgctatgaaggggtaactttgcaaaagaggaatggataacacctatataaaggtgac |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |||| |||||| |
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| T |
2609246 |
aagcaatattaatcactaggtataatgtgattccagaaagcattgctatgaaggggtaactttgcaaaataggtatggctaacacctacataa-ggtgac |
2609148 |
T |
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| Q |
225 |
aaaatagcaagacaatttcagaacaagaaacaatgtaatattgagttgcattaaccactatgaatggtgaaatattaccccggagatgcgagcaaatctt |
324 |
Q |
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|||| | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2609147 |
aaaacatcaagacaattttagaacaagaaataatgtaatgctgagttgcattaaccactatgaatggtgaaaacttaccccggagatgcgagcaaatctt |
2609048 |
T |
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| Q |
325 |
acaggtccaaaagttttttctaatgatgggtacaaggaaagttggtagacaataagaccaatacctgaccattgatcattggagaagagctcaataatta |
424 |
Q |
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|||||||||||| |||||||||||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |
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| T |
2609047 |
gcaggtccaaaagatttttctaatgatgggtatagggaaagctggtagacaataagaccaatacctgatcattgatcatttcagaagagctgaataatta |
2608948 |
T |
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| Q |
425 |
agcattatatcttgtgaaatgaatgcacaaaataaag |
461 |
Q |
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|||| |||||||||||||| ||| ||||||||||||| |
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| T |
2608947 |
agcagtatatcttgtgaaaagaaagcacaaaataaag |
2608911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1157 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 482 - 412
Alignment:
| Q |
124 |
gaagcaatattaatcactaggtataatgtgattccagaaagcattgctatgaaggggtaactttgcaaaag |
194 |
Q |
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||||||||| ||||||| | |||||| || || ||||| | |||||||||||||||||||||||||||||| |
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| T |
482 |
gaagcaatactaatcacaatgtataaggttatgccagacaacattgctatgaaggggtaactttgcaaaag |
412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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