View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18606_low_10 (Length: 370)
Name: NF18606_low_10
Description: NF18606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18606_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 355
Target Start/End: Original strand, 1660999 - 1661342
Alignment:
| Q |
12 |
catcatcaatcgtttgttcttaatatcaacaaaacaagttcaaatgtatggtattcaattacatatacctgttgggcgtggagtctgactcgtctcttaa |
111 |
Q |
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| T |
1660999 |
catcatcaatcgtttgttcttaatatcaacaaaacaagttcaaatgtatggtattcaattacatatacctgttgggcgtggagtctgactcgtctattaa |
1661098 |
T |
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| Q |
112 |
aaagtagatattttttaaaagaattaattccttgatagaatcaataaatttacattcattattgaaattgtttgaatatttctttgaataaaaattgttc |
211 |
Q |
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| T |
1661099 |
aaagtagatattttttaaaagaattaattccttgatagaatcaataaatttacattcattattgaaattgtttgaatatttctttgaataaaaattgttc |
1661198 |
T |
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| Q |
212 |
accatttcataaagtagttgacatcggtgttgtaagtacaagtacaattcatataataataacatcaaaagacattggatatactcagatgcggaagtga |
311 |
Q |
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| T |
1661199 |
accatttcataaagtagttgacattggtgttgtaagtacaagtaccattcatataataataacatcaaaagacattggatatactcagatgcggaagtga |
1661298 |
T |
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| Q |
312 |
acgtgcaatttttcatttctcaacgttttgtcagggtaagtttc |
355 |
Q |
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| T |
1661299 |
acatgcaatttttcatttctcaacgttttgtcagggtaaatttc |
1661342 |
T |
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