View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18606_low_11 (Length: 313)

Name: NF18606_low_11
Description: NF18606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18606_low_11
NF18606_low_11
[»] chr7 (8 HSPs)
chr7 (13-298)||(6091173-6091456)
chr7 (170-205)||(31377001-31377036)
chr7 (172-210)||(41099759-41099797)
chr7 (176-213)||(2144554-2144591)
chr7 (176-213)||(5937436-5937473)
chr7 (176-213)||(9037732-9037769)
chr7 (176-213)||(35238199-35238236)
chr7 (181-213)||(18678160-18678192)
[»] chr8 (2 HSPs)
chr8 (176-213)||(27733854-27733891)
chr8 (169-213)||(22600529-22600573)
[»] chr6 (7 HSPs)
chr6 (181-213)||(33135595-33135627)
chr6 (176-214)||(5635902-5635940)
chr6 (176-213)||(6751897-6751934)
chr6 (176-213)||(10031577-10031614)
chr6 (176-213)||(19369824-19369861)
chr6 (173-213)||(14514792-14514832)
chr6 (179-211)||(32297993-32298025)
[»] chr1 (2 HSPs)
chr1 (170-213)||(40686773-40686816)
chr1 (169-213)||(3921667-3921711)
[»] scaffold0314 (1 HSPs)
scaffold0314 (168-205)||(8947-8984)
[»] chr5 (3 HSPs)
chr5 (176-209)||(18106651-18106684)
chr5 (176-213)||(21319960-21319997)
chr5 (176-213)||(30080516-30080553)
[»] chr4 (1 HSPs)
chr4 (176-213)||(13307884-13307921)
[»] chr3 (1 HSPs)
chr3 (176-213)||(15864252-15864289)
[»] chr2 (2 HSPs)
chr2 (176-213)||(18512157-18512194)
chr2 (176-213)||(43586020-43586057)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 6091173 - 6091456
Alignment:
Q  13 aatatatgcgaagtgtctaaggggtgtaaaagtgtgtcaaagnnnnnnnntaagaaaaattgggacgcttgtctggcaagcgtcgtacatgtgtcagaca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6091173 aatatatgcgaagtgtctaaggggtgtaaaagtgtgtcaaagaaaaaa--taagaaaaattgggacgcttgtctggcaagcgtcgtacatgtgtcacaca 6091270  T
Q  113 t-gacaacttcaaactagaggtgtccatgcttcagagacgagggacaaaacacacataacatcaataaaattttgagaaaatgatataattcaatataat 211  Q
    | ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6091271 tcgacaacttcaaactagaggcg-ccatgcttcagagacgagggacaaaacacacataacatcaataaaattttgagaaaatgatataattcaatataat 6091369  T
Q  212 caatatgtatgtgctggaaacttacacaggtccaactttgagacacaccttctaccaaaagcattggtgttaggaagatcaatgatc 298  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  6091370 caatatgtatgtgctggaaacttacacaggtccaacttcgagacacaccttctaccaaaaacgttggtgttaggaagatcaatgatc 6091456  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 31377001 - 31377036
Alignment:
Q  170 acatcaataaaattttgagaaaatgatataattcaa 205  Q
    |||||||||||||||||||||||||| |||||||||    
T  31377001 acatcaataaaattttgagaaaatgacataattcaa 31377036  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 41099797 - 41099759
Alignment:
Q  172 atcaataaaattttgagaaaatgatataattcaatataa 210  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  41099797 atcaataataatttgagaaaatgatataattcaatataa 41099759  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 2144591 - 2144554
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatca 213  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  2144591 ataaaattttgagaaaatgacataattcaatgtaatca 2144554  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 5937473 - 5937436
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatca 213  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  5937473 ataaaattttgagaaaatgacataattcaatgtaatca 5937436  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 9037769 - 9037732
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatca 213  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  9037769 ataaaattttgaaaaaatgatatagttcaatataatca 9037732  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 35238236 - 35238199
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatca 213  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  35238236 ataatattttgagaaaatgacataattcaatataatca 35238199  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 18678160 - 18678192
Alignment:
Q  181 attttgagaaaatgatataattcaatataatca 213  Q
    ||||||||||||||| |||||||||||||||||    
T  18678160 attttgagaaaatgacataattcaatataatca 18678192  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 27733854 - 27733891
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatca 213  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27733854 ataaaattttgagaaaatgatataattcaatgtaatca 27733891  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 22600529 - 22600573
Alignment:
Q  169 aacatcaataaaattttgagaaaatgatataattcaatataatca 213  Q
    |||| |||||||||||  ||||||||| |||||||||||||||||    
T  22600529 aacaccaataaaatttaaagaaaatgacataattcaatataatca 22600573  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 33135595 - 33135627
Alignment:
Q  181 attttgagaaaatgatataattcaatataatca 213  Q
    |||||||||||||||||||||||||||||||||    
T  33135595 attttgagaaaatgatataattcaatataatca 33135627  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 5635940 - 5635902
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatcaa 214  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  5635940 ataaaattttaagaaaatgacataattcaatataatcaa 5635902  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 6751934 - 6751897
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatca 213  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  6751934 ataaaattttgagaaaatgacataattcaatgtaatca 6751897  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 10031577 - 10031614
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatca 213  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  10031577 ataaaattttgagaaaatgacataattcaatgtaatca 10031614  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 19369824 - 19369861
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatca 213  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  19369824 ataaaattttgagaaaatgacataattcaatgtaatca 19369861  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 14514792 - 14514832
Alignment:
Q  173 tcaataaaattttgagaaaatgatataattcaatataatca 213  Q
    ||||||||||||| | |||||||||||||||||| ||||||    
T  14514792 tcaataaaattttaaaaaaatgatataattcaatgtaatca 14514832  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 32297993 - 32298025
Alignment:
Q  179 aaattttgagaaaatgatataattcaatataat 211  Q
    |||||||||||||||||||||||||| ||||||    
T  32297993 aaattttgagaaaatgatataattcattataat 32298025  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 40686816 - 40686773
Alignment:
Q  170 acatcaataaaattttgagaaaatgatataattcaatataatca 213  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||    
T  40686816 acatcgataaaattttgataaaatgatataattcaatgtaatca 40686773  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 3921667 - 3921711
Alignment:
Q  169 aacatcaataaaattttgagaaaatgatataattcaatataatca 213  Q
    ||||||||||| | ||||||||||||| |||||||||| ||||||    
T  3921667 aacatcaataataatttgagaaaatgacataattcaatgtaatca 3921711  T

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Target: scaffold0314 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 8947 - 8984
Alignment:
Q  168 taacatcaataaaattttgagaaaatgatataattcaa 205  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  8947 taacatcgataaaattttgagaaaatgacataattcaa 8984  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 18106684 - 18106651
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatata 209  Q
    |||||||||||| |||||||||||||||||||||    
T  18106684 ataaaattttgaaaaaatgatataattcaatata 18106651  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 21319997 - 21319960
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatca 213  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  21319997 ataaaattttgaaaaaatgatataattcaatgtaatca 21319960  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 30080553 - 30080516
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatca 213  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  30080553 ataaaattttgagaaaatgacataattcaatgtaatca 30080516  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 13307884 - 13307921
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatca 213  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  13307884 ataaaattttgagaaaatgacataattcaatgtaatca 13307921  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 15864252 - 15864289
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatca 213  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  15864252 ataaagttttgagaaaatgacataattcaatataatca 15864289  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 18512194 - 18512157
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatca 213  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  18512194 ataaaattttgagaaaataatataattcaatgtaatca 18512157  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 43586057 - 43586020
Alignment:
Q  176 ataaaattttgagaaaatgatataattcaatataatca 213  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  43586057 ataaaattttgagaaaatgacataattcaatgtaatca 43586020  T

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