View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18606_low_12 (Length: 293)

Name: NF18606_low_12
Description: NF18606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18606_low_12
NF18606_low_12
[»] chr1 (27 HSPs)
chr1 (77-271)||(8459771-8459963)
chr1 (104-271)||(22345467-22345633)
chr1 (104-271)||(23914038-23914203)
chr1 (117-271)||(36076273-36076425)
chr1 (109-271)||(37015101-37015261)
chr1 (104-271)||(50117474-50117639)
chr1 (110-203)||(3948168-3948260)
chr1 (110-271)||(20349639-20349798)
chr1 (110-203)||(38775832-38775924)
chr1 (109-186)||(6561882-6561959)
chr1 (131-271)||(29356419-29356557)
chr1 (117-271)||(46973411-46973565)
chr1 (137-271)||(13174046-13174179)
chr1 (137-226)||(4516260-4516349)
chr1 (104-186)||(13629685-13629767)
chr1 (110-203)||(3983362-3983454)
chr1 (109-186)||(22398086-22398163)
chr1 (104-271)||(44620816-44620980)
chr1 (109-271)||(41454019-41454177)
chr1 (137-226)||(7980872-7980962)
chr1 (137-271)||(19498845-19498975)
chr1 (109-271)||(21944081-21944241)
chr1 (130-271)||(15047490-15047629)
chr1 (122-183)||(44465852-44465913)
chr1 (236-271)||(5078125-5078160)
chr1 (236-271)||(6561990-6562025)
chr1 (238-271)||(1654954-1654987)
[»] chr4 (17 HSPs)
chr4 (109-271)||(4975974-4976135)
chr4 (109-271)||(44049307-44049467)
chr4 (131-271)||(21471111-21471250)
chr4 (117-271)||(11494752-11494906)
chr4 (110-269)||(4979631-4979785)
chr4 (137-271)||(3449810-3449943)
chr4 (110-271)||(3404008-3404167)
chr4 (109-271)||(9890204-9890366)
chr4 (110-203)||(49566181-49566273)
chr4 (109-271)||(17139813-17139974)
chr4 (109-271)||(13173441-13173601)
chr4 (130-271)||(4768861-4769000)
chr4 (144-271)||(38464507-38464633)
chr4 (117-271)||(19073366-19073518)
chr4 (137-271)||(51644230-51644363)
chr4 (149-271)||(18581074-18581196)
chr4 (236-271)||(41023594-41023629)
[»] chr2 (23 HSPs)
chr2 (108-271)||(43949947-43950108)
chr2 (100-271)||(9651375-9651547)
chr2 (117-271)||(41008639-41008791)
chr2 (117-271)||(435552-435703)
chr2 (138-271)||(24607311-24607442)
chr2 (104-224)||(41182918-41183038)
chr2 (139-223)||(34921504-34921587)
chr2 (104-271)||(27276075-27276240)
chr2 (110-271)||(38945945-38946104)
chr2 (110-203)||(5335136-5335228)
chr2 (110-203)||(10624171-10624263)
chr2 (137-270)||(19186954-19187085)
chr2 (117-203)||(213165-213250)
chr2 (104-186)||(24749933-24750015)
chr2 (135-271)||(1149670-1149804)
chr2 (132-271)||(1100805-1100943)
chr2 (116-271)||(3803279-3803432)
chr2 (137-275)||(12908157-12908297)
chr2 (109-186)||(7263310-7263387)
chr2 (193-271)||(41053355-41053432)
chr2 (109-186)||(39794255-39794332)
chr2 (137-271)||(45475622-45475755)
chr2 (236-271)||(24749859-24749894)
[»] scaffold0219 (1 HSPs)
scaffold0219 (104-271)||(15885-16050)
[»] chr6 (11 HSPs)
chr6 (104-271)||(2052328-2052493)
chr6 (117-271)||(7363028-7363180)
chr6 (117-271)||(7361371-7361523)
chr6 (109-271)||(31146585-31146744)
chr6 (110-271)||(18347224-18347383)
chr6 (149-271)||(26702027-26702147)
chr6 (130-226)||(13388442-13388537)
chr6 (176-271)||(18606254-18606347)
chr6 (138-226)||(28250136-28250223)
chr6 (133-203)||(1612476-1612545)
chr6 (151-226)||(23985750-23985824)
[»] scaffold0340 (1 HSPs)
scaffold0340 (101-271)||(877-1046)
[»] chr3 (22 HSPs)
chr3 (104-269)||(6505674-6505838)
chr3 (117-271)||(7837804-7837956)
chr3 (117-270)||(46992944-46993094)
chr3 (104-271)||(7842713-7842878)
chr3 (137-271)||(29929635-29929769)
chr3 (137-271)||(29978789-29978923)
chr3 (110-271)||(6741071-6741230)
chr3 (110-271)||(9429553-9429712)
chr3 (110-203)||(30947359-30947451)
chr3 (117-271)||(23442845-23442996)
chr3 (109-271)||(48250573-48250733)
chr3 (110-203)||(3949006-3949098)
chr3 (110-203)||(8160701-8160793)
chr3 (130-271)||(13747446-13747585)
chr3 (104-271)||(14398741-14398907)
chr3 (144-271)||(21955943-21956068)
chr3 (104-186)||(16444889-16444971)
chr3 (117-271)||(36817235-36817387)
chr3 (138-271)||(9582706-9582836)
chr3 (117-224)||(28610819-28610925)
chr3 (236-271)||(2745059-2745094)
chr3 (239-271)||(50953487-50953519)
[»] scaffold0360 (1 HSPs)
scaffold0360 (131-271)||(7041-7179)
[»] chr8 (19 HSPs)
chr8 (104-270)||(39752723-39752886)
chr8 (135-271)||(2146687-2146821)
chr8 (137-271)||(18205994-18206125)
chr8 (137-223)||(7168209-7168294)
chr8 (117-267)||(43369993-43370141)
chr8 (112-271)||(8423541-8423698)
chr8 (109-271)||(20546977-20547138)
chr8 (110-203)||(32378627-32378719)
chr8 (110-203)||(32432582-32432674)
chr8 (110-203)||(7340342-7340434)
chr8 (110-271)||(1114952-1115111)
chr8 (124-271)||(35966469-35966614)
chr8 (130-226)||(45454653-45454748)
chr8 (137-226)||(22577918-22578007)
chr8 (137-203)||(30305302-30305367)
chr8 (236-271)||(4866643-4866678)
chr8 (236-271)||(31958016-31958051)
chr8 (236-271)||(43689830-43689865)
chr8 (239-271)||(22577872-22577904)
[»] chr5 (20 HSPs)
chr5 (104-271)||(28387477-28387642)
chr5 (117-271)||(4203922-4204074)
chr5 (101-224)||(31098630-31098752)
chr5 (117-271)||(33993488-33993640)
chr5 (109-271)||(34123625-34123785)
chr5 (110-271)||(37820587-37820746)
chr5 (104-271)||(27867546-27867711)
chr5 (109-271)||(13567806-13567966)
chr5 (104-271)||(34077975-34078140)
chr5 (109-271)||(7021589-7021749)
chr5 (133-271)||(25896811-25896945)
chr5 (110-271)||(28886125-28886284)
chr5 (117-271)||(7800699-7800851)
chr5 (109-186)||(11033167-11033244)
chr5 (109-186)||(38859906-38859983)
chr5 (149-267)||(18538075-18538194)
chr5 (137-223)||(30354129-30354213)
chr5 (236-271)||(1035392-1035427)
chr5 (236-271)||(21999262-21999297)
chr5 (236-271)||(34944048-34944083)
[»] scaffold0794 (1 HSPs)
scaffold0794 (104-224)||(5530-5650)
[»] chr7 (11 HSPs)
chr7 (144-271)||(47061136-47061261)
chr7 (117-203)||(45763655-45763740)
chr7 (110-203)||(43623852-43623944)
chr7 (111-271)||(18105582-18105740)
chr7 (172-271)||(47741946-47742043)
chr7 (109-271)||(618455-618615)
chr7 (109-186)||(15059896-15059973)
chr7 (139-203)||(30786800-30786863)
chr7 (236-271)||(10708110-10708145)
chr7 (236-271)||(29593184-29593219)
chr7 (236-271)||(36186003-36186038)
[»] scaffold0388 (1 HSPs)
scaffold0388 (109-271)||(11447-11607)
[»] scaffold0147 (1 HSPs)
scaffold0147 (137-271)||(591-724)
[»] scaffold0361 (1 HSPs)
scaffold0361 (104-271)||(4100-4265)
[»] scaffold0341 (2 HSPs)
scaffold0341 (109-186)||(17072-17149)
scaffold0341 (236-271)||(17180-17215)
[»] scaffold0494 (1 HSPs)
scaffold0494 (117-271)||(1067-1219)
[»] scaffold0744 (1 HSPs)
scaffold0744 (109-186)||(126-203)
[»] scaffold0116 (1 HSPs)
scaffold0116 (139-271)||(11482-11612)
[»] scaffold0038 (1 HSPs)
scaffold0038 (138-226)||(50298-50385)
[»] scaffold0057 (1 HSPs)
scaffold0057 (137-271)||(22976-23107)
[»] scaffold0101 (1 HSPs)
scaffold0101 (104-186)||(33078-33160)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 77 - 271
Target Start/End: Original strand, 8459771 - 8459963
Alignment:
Q  77 gtattgcaaaagtgttctacgtaacattacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtag 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8459771 gtattgcaaaagtgttctacgtaacattacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagaattctacgtaacagacgtag 8459870  T
Q  177 atacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||||||||    
T  8459871 atacccataacaaaa-ccaaaaaatgaacggattaaaatgctcaatacctc-tttttttacctcaaaagtgtgttgatacctcttatgcttgatg 8459963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 104 - 271
Target Start/End: Complemental strand, 22345633 - 22345467
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| ||||||| |||||||||||| |||||||| || |||| | |||||||||||||||||||| |||||| |||||||||||||||  ||||||||||    
T  22345633 tacactaccgaagttttcctcggcagttaactgctgaagttttccatgacagagttctacgtaactgacgtaaatacccataacaaaa-tcaaaaaatga 22345535  T
Q  204 acggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||| |||||||||||||||||||         |||| ||||||||||||||||||| |||||||||||    
T  22345534 acgaattaaaatgctcaatacctgttttttttacgtaaaaagtgtgttgatacctcctatgcttgatg 22345467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 271
Target Start/End: Complemental strand, 23914203 - 23914038
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| ||||||| |||||||||||| ||||||||||||||| || ||||||| |||||||||||| ||||||||||||||||| || ||||||||||| |    
T  23914203 tacactaccgaagttttcctcggcagttaactgccgaggttccc-atgacagggttctacgtaactgacgtagatacccataa-aatacccaaaaaatca 23914106  T
Q  204 acggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |  || |||||||| ||||||||         | |||||||||||||||||||||| |||||||||||    
T  23914105 atcgaataaaatgcacaatacctgttttttttatgtcaaaagtgtgttgatacctcctatgcttgatg 23914038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 36076273 - 36076425
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    |||||||||||| | |||| | ||||||| | |||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||||||    
T  36076273 ttttcctcggcagtaaactactgaggttttccatgacagagttctacgtaactgacgtagatacccataacaaaa-tcaaaaaatgaatggattaaaatg 36076371  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
     | |||||||         |||||||||||||||||||| ||  |||||||||||    
T  36076372 tttaatacct-gtttttttacgtcaaaagtgtgttgatatcttctatgcttgatg 36076425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 109 - 271
Target Start/End: Complemental strand, 37015261 - 37015101
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    ||||||| |||||||||||| ||||||||||||| |||| |||||||  ||||||||||| |||||||| |||||||||| || ||||||||| ||  ||    
T  37015261 taccgaagttttcctcggcagttaactgccgaggattcccatgacaggattctacgtaactgacgtagaaacccataacataa-ccaaaaaatcaatcga 37015163  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
     |||||||| ||||| ||         |||||||||||||||||||||||| |||||||||||    
T  37015162 ataaaatgcacaata-cttgtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 37015101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 50117474 - 50117639
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| ||||||| |||||||||| | ||||||| ||||| || | ||||||| |||||||||||| |||||||| |||||||||| || ||||||||| |    
T  50117474 tacactaccgaagttttcctcggtagttaactgtcgaggatttccatgacagggttctacgtaactgacgtagaaacccataacataa-ccaaaaaatca 50117572  T
Q  204 acggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |  || |||||||| ||||||||         |||||||||||||||||||||||| |||||||||||    
T  50117573 atcgaataaaatgcacaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 50117639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 3948168 - 3948260
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  3948168 accgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 3948260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 271
Target Start/End: Complemental strand, 20349798 - 20349639
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggat 209  Q
    |||||||| |||||||||| |||||| |||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    |     
T  20349798 accgaaatattcctcggcagttaactaccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatgactcaaa 20349700  T
Q  210 taaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||| ||||||||         ||||||| |||||||||||||||| |||||||||||    
T  20349699 taaaatgcacaatacct-gtttttttacgtcaatagtgtgttgatacctcctatgcttgatg 20349639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 38775832 - 38775924
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  38775832 accgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 38775924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 6561882 - 6561959
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataa 186  Q
    |||||| ||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||  ||||||||||||||||    
T  6561882 taccgagattttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactcacgtagatacccataa 6561959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 29356419 - 29356557
Alignment:
Q  131 taactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnn 230  Q
    |||||||||||| |||| ||||||| |||||||| ||| ||||||||||||||||| || ||||||||||| ||  || |||||||| ||||||||        
T  29356419 taactgccgaggattcccatgacagggttctacgcaactgacgtagatacccataa-aacacccaaaaaatcaatcgaataaaatgcacaatacct-gtt 29356516  T
Q  231 nnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
         ||||||| |||||||||||||||| |||||||||||    
T  29356517 tttttacgtcaatagtgtgttgatacctcctatgcttgatg 29356557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 271
Target Start/End: Complemental strand, 46973565 - 46973411
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacaga-gttctacgtaa-cagacgtagatacccataacaaaacccaaaaaatgaacggattaaaa 214  Q
    |||||||||||| | |||| ||||||||| | |||||||| ||||||||||| | |||||| | || ||||||||| || |||||||||||| |||||||    
T  46973565 ttttcctcggcagtcaactaccgaggttttccatgacagaagttctacgtaaactgacgtaaaaactcataacaaagcc-aaaaaatgaacgaattaaaa 46973467  T
Q  215 tgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||| ||         |||||||||||||||||||||||| |||||||||||    
T  46973466 tgctcaata-cttgtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 46973411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 271
Target Start/End: Complemental strand, 13174179 - 13174046
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaa-cagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnn 235  Q
    |||||| |||| |||| |||||||||||||| | |||||| | |||||||||||| || |||||||||||||||||||||||| |||| ||             
T  13174179 ccgaggattcccatgatagagttctacgtaaactgacgtaaaaacccataacaaagcc-aaaaaatgaacggattaaaatgctaaatatct-gttttttt 13174082  T
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  13174081 acgtcaaaagtgtgttgatacctcatatgcttgatg 13174046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 4516349 - 4516260
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaa-cagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacct 226  Q
    ||||||||| | ||||||||||||||||||| |  ||||| | |||||||||||| || ||||||||||||||||||||||||||||||||    
T  4516349 ccgaggttttccatgacagagttctacgtaaactaacgtaaaaacccataacaaagcc-aaaaaatgaacggattaaaatgctcaatacct 4516260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 13629767 - 13629685
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataa 186  Q
    |||| ||||||| ||| |||||||| ||||||||||||| |||| ||||||| ||||||||||||  ||||||||||||||||    
T  13629767 tacactaccgaagtttccctcggcagttaactgccgaggattcccatgacagggttctacgtaactcacgtagatacccataa 13629685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 3983454 - 3983362
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||| |||||||||||| ||||||||||||| || | ||||||| |||||||||||| |||||| |||||| |||| | |||||||||||||    
T  3983454 accgaagttttcctcggcagttaactgccgaggatttccatgacagggttctacgtaactgacgtaaatacccctaac-acacccaaaaaatga 3983362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 22398163 - 22398086
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataa 186  Q
    ||||||| ||| |||||||| ||||||||||||| |||| ||||||| ||||||||||||  ||||||||||||||||    
T  22398163 taccgaagtttccctcggcagttaactgccgaggattcccatgacagggttctacgtaactcacgtagatacccataa 22398086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 44620816 - 44620980
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| ||||||| ||| |||||||| ||||||||||||| |||| ||||||| ||||||||||||  ||||||| |||||||| | ||   ||||||| |    
T  44620816 tacactaccgaagtttccctcggcacttaactgccgaggattcccatgacagggttctacgtaactcacgtagaaacccataaaataa--taaaaaatca 44620913  T
Q  204 acggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |  || |||||||| ||||||||         |||||||| ||||||||||||||| |||||||||||    
T  44620914 atcgaataaaatgcacaatacct-gtttttttacgtcaaatgtgtgttgatacctcctatgcttgatg 44620980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 271
Target Start/End: Complemental strand, 41454177 - 41454019
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    ||||||| ||||||||||||   ||||||||||| |||  ||||||| |||||||||||  ||| ||||||||||||| || ||||||||||| ||  ||    
T  41454177 taccgaagttttcctcggcag--aactgccgaggattctcatgacagggttctacgtaattgacatagatacccataa-aacacccaaaaaatcaatcga 41454081  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
     |||||||| ||||||||         ||||||| |||||||||||||||| |||||||||||    
T  41454080 ataaaatgcacaatacct-gtttttttacgtcaatagtgtgttgatacctcctatgcttgatg 41454019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 7980872 - 7980962
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaa-cagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacct 226  Q
    |||| |||||| ||||||||||| ||||||| | |||||| | | | |||||||| || ||||||||||||||||||||||||||||||||    
T  7980872 ccgaagtttcccatgacagagttatacgtaaactgacgtaaaaatcgataacaaagccaaaaaaatgaacggattaaaatgctcaatacct 7980962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 271
Target Start/End: Original strand, 19498845 - 19498975
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnna 236  Q
    |||| |||||| |||||| |||||| |||||| |||||||| | ||||||| ||||  ||||||| ||| ||||||||||||||||||||         |    
T  19498845 ccgaagtttcccatgacatagttctgcgtaactgacgtaga-atccataaccaaaca-aaaaaataaaccgattaaaatgctcaatacct--gtttttta 19498940  T
Q  237 cgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||||||||||||||| |||||||||||    
T  19498941 cgtcaaaagtgtgttgatacctcctatgcttgatg 19498975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 271
Target Start/End: Original strand, 21944081 - 21944241
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    ||||||||||| | |||||| | | || |||| | |||| |||| || |||||||||||| |||||||| || |||||| ||| ||||||||| ||| ||    
T  21944081 taccgaaatttacttcggcagtaagctaccgatgattcccatgatagggttctacgtaactgacgtagaaacgcataac-aaatccaaaaaataaaccga 21944179  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||||||||||         |||| ||||||||||||||||||| |||| ||||||    
T  21944180 ttaaaatgctcaatacct-gtttatttacgttaaaagtgtgttgatacctcctatgtttgatg 21944241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 271
Target Start/End: Complemental strand, 15047629 - 15047490
Alignment:
Q  130 ttaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnn 229  Q
    ||||||||||||| |||| ||||||| |||||||||||| ||| ||||||||| ||| || ||||||||||||||   | |||||||| ||||||||       
T  15047629 ttaactgccgaggattcccatgacagggttctacgtaactgacatagatacccctaa-aacacccaaaaaatgaatcaaataaaatgcacaatacct-gt 15047532  T
Q  230 nnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
          || |||| |||||||||||||||| |||||||||||    
T  15047531 ttttttacatcaatagtgtgttgatacctcctatgcttgatg 15047490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 44465913 - 44465852
Alignment:
Q  122 ctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagataccca 183  Q
    ||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||||    
T  44465913 ctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagataccca 44465852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 5078160 - 5078125
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||| |||||||||||||||||||||||||||    
T  5078160 acgtcaaatgtgtgttgatacctcttatgcttgatg 5078125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 6561990 - 6562025
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  6561990 acgtcaaaagtgtgttgatacctcctatgcttgatg 6562025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 1654987 - 1654954
Alignment:
Q  238 gtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||| |||||||||||    
T  1654987 gtcaaaagtgtgttgatacctcctatgcttgatg 1654954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 109 - 271
Target Start/End: Complemental strand, 4976135 - 4975974
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    ||||||| |||||||| ||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||    
T  4976135 taccgaagttttcctctgcagttaactgccgaggtttcccatgacagagttctacgtaactgacgtagatacccataacgaaa-ccaaaaaatgaacgga 4976037  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||||||||||         |||||||||||||||||||||||| |||||||||||    
T  4976036 ttaaaatgctcaatacctgttttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 4975974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 109 - 271
Target Start/End: Complemental strand, 44049467 - 44049307
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    ||||||| ||||| |||||| |||||||| ||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||  |||||||||||||||    
T  44049467 taccgaatttttcttcggcagttaactgctgaggtttcccatggcagagttctacgtaactgacgtagatacccgtaacaaaa-tcaaaaaatgaacgga 44049369  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||||||||||         |||||||||||||||||||||||| |||||||||||    
T  44049368 ttaaaatgctcaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 44049307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 131 - 271
Target Start/End: Complemental strand, 21471250 - 21471111
Alignment:
Q  131 taactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnn 230  Q
    |||||||||||| |||| |||||||||||||||||||| || ||||| ||||||||||||||  ||||||||||||||||||||||||||||||||        
T  21471250 taactgccgaggattcccatgacagagttctacgtaactgatgtagacacccataacaaaacaaaaaaaatgaacggattaaaatgctcaatacct-gtt 21471152  T
Q  231 nnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
         |||||||||||||||||||||||| |||||||||||    
T  21471151 tttttacgtcaaaagtgtgttgatacctcctatgcttgatg 21471111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 117 - 271
Target Start/End: Complemental strand, 11494906 - 11494752
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    |||||| ||||| |||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||| ||||||||||||||||||||||||    
T  11494906 ttttccacggcagttaactgccgaggtttcccatgacagagttctatgtaattgacgtagatacccataacaaaa-ccaaaaaatgaacggattaaaatg 11494808  T
Q  217 ctcaatacct-cnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
     |||||||||          ||||||||||||||| |||||||| |||||||||||    
T  11494807 ttcaatacctgtttttttttacgtcaaaagtgtgtggatacctcctatgcttgatg 11494752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 269
Target Start/End: Original strand, 4979631 - 4979785
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggat 209  Q
    |||||| |||||||||||| ||||||||| |||||||| |||||||||||||||  ||| || |||||||||||||||||||||  ||||||||||||||    
T  4979631 accgaagttttcctcggcagttaactgcctaggtttcccatgacagagttctac--aactgatgtagatacccataacaaaacc--aaaaatgaacggat 4979726  T
Q  210 taaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttga 269  Q
    |||||||||||||| ||         ||||||||||||| |||||||||| |||||||||    
T  4979727 taaaatgctcaatagct-atttttttacgtcaaaagtgtattgatacctcctatgcttga 4979785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 271
Target Start/End: Original strand, 3449810 - 3449943
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnna 236  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||||||||| ||| |||||||||  |||||||||         |    
T  3449810 ccgaggtttcccatgacaaagttctacgtaactgacgtagatacccataacaaaa-ccaaaaaataaaccgattaaaattttcaatacctgtttttttta 3449908  T
Q  237 cgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||| |||||||||||||||||||| |||||    
T  3449909 cgtcaaaaatgtgttgatacctcttatgcctgatg 3449943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 271
Target Start/End: Complemental strand, 3404167 - 3404008
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggat 209  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || ||||||||||| ||   |     
T  3404167 accgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatcaatcaaa 3404069  T
Q  210 taaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||| ||||||||         ||||||| |||||||||||||||| |||||||||||    
T  3404068 taaaatgcacaatacct-gtttttttacgtcaatagtgtgttgatacctcctatgcttgatg 3404008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 271
Target Start/End: Complemental strand, 9890366 - 9890204
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    |||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||  |||||||||||||||| | ||   |||||   ||  ||    
T  9890366 taccgagattttcctcggcagttaactgccgaggattcccatgacagagttctacgtaactcacgtagatacccataaaataataaaaaaatacaatcga 9890267  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
     |||||||| ||||| ||         |||||||| |||||||||||||||||||||||||||    
T  9890266 ataaaatgcacaatatctgttttttttacgtcaaatgtgtgttgatacctcttatgcttgatg 9890204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 49566181 - 49566273
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  49566181 accgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 49566273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 109 - 271
Target Start/End: Complemental strand, 17139974 - 17139813
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaa-cagacgtagatacccataacaaaacccaaaaaatgaacgg 207  Q
    ||||||||||| | |||| | | | ||||||||| |||| ||||||||||||||||||| | |||||| | ||||||||||||| | ||||| ||||| |    
T  17139974 taccgaaatttacttcggtagtaagctgccgaggattcccatgacagagttctacgtaaactgacgtaaaaacccataacaaaagctaaaaa-tgaaccg 17139876  T
Q  208 attaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||         |||||||||||||||||||||||| |||| ||||||    
T  17139875 attaaaatgctcaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatggttgatg 17139813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 271
Target Start/End: Complemental strand, 13173601 - 13173441
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    ||||||| ||| |||||||| ||||||||||||| |||| ||||||| ||||||||||||  |||||||||||||||| | ||  | |||||| ||   |    
T  13173601 taccgaagtttccctcggcagttaactgccgaggattcccatgacagggttctacgtaactcacgtagatacccataaaataatac-aaaaatcaatcaa 13173503  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||| ||||||||         |||||||| ||||||||||||||| |||||||||||    
T  13173502 ttaaaatgcacaatacct-gtttttttacgtcaaatgtgtgttgatacctcctatgcttgatg 13173441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 271
Target Start/End: Complemental strand, 4769000 - 4768861
Alignment:
Q  130 ttaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnn 229  Q
    ||||||||| | | |||| |||||||||||||||||||| |||  ||||| ||||||||||| | |||||||||||| |||||||||||  ||||||       
T  4769000 ttaactgccaatgattcccatgacagagttctacgtaactgacagagatatccataacaaaa-caaaaaaatgaacgaattaaaatgctatatacct-gt 4768903  T
Q  230 nnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
          |||||||||| ||||||||||||| |||||||||||    
T  4768902 ttttttacgtcaaaagggtgttgatacctcctatgcttgatg 4768861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 38464507 - 38464633
Alignment:
Q  144 ttcctatgacagagttctacgtaa-cagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnnacgtcaa 242  Q
    |||| |||||||||||||||| || | |||||| | |||||||||||| || |||||||||||| |||||||||||||||||||         |||||||    
T  38464507 ttcccatgacagagttctacgcaaactgacgtaaaaacccataacaaagcc-aaaaaatgaacgaattaaaatgctcaatacct-gtttttttacgtcaa 38464604  T
Q  243 aagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||| | |||||||||||||||||||    
T  38464605 aagtgtgctaatacctcttatgcttgatg 38464633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 19073366 - 19073518
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    |||||||||||| || |||||||||| |||| ||||||| ||||||||||||  | |||||||||||||| || |   ||||||| ||  || |||||||    
T  19073366 ttttcctcggcagtttactgccgaggattcccatgacagggttctacgtaactcaagtagatacccataa-aataataaaaaaatcaatcgaataaaatg 19073464  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    | ||||||||         |||||||||||||||||||||||| |||||||||||    
T  19073465 cacaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 19073518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 271
Target Start/End: Original strand, 51644230 - 51644363
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaa-cagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnn 235  Q
    |||||| |||| |||||||||||||| |||| |  ||||| | |||||||||||| || ||||||| |||| |||| | ||||||||||||             
T  51644230 ccgaggattcccatgacagagttctaagtaaactaacgtaaaaacccataacaaagcc-aaaaaataaacgaattatagtgctcaatacct-gttttttt 51644327  T
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  51644328 acgtcaaaagtgtgttgatacctcatatgcttgatg 51644363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 271
Target Start/End: Original strand, 18581074 - 18581196
Alignment:
Q  149 atgacagagttctacgt-aacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctc-aatacctcnnnnnnnnacgtcaaaagt 246  Q
    ||||||||||||||||| ||| |||||| | ||||||||| ||| || |||||||||||  ||||||||||| |||||||         |||||||||||    
T  18581074 atgacagagttctacgtaaactgacgtaaaaacccataac-aaagcctaaaaatgaacgacttaaaatgctcaaatacct-atttttttacgtcaaaagt 18581171  T
Q  247 gtgttgatacctcttatgcttgatg 271  Q
     |||||||||||| |||||||||||    
T  18581172 ctgttgatacctcctatgcttgatg 18581196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 41023629 - 41023594
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  41023629 acgtcaaaagtgtgttgatacctcctatgcttgatg 41023594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 108 - 271
Target Start/End: Original strand, 43949947 - 43950108
Alignment:
Q  108 ataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgg 207  Q
    |||||||  |||||||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||    
T  43949947 ataccgaggttttcctcggcagttaactgccgaggtttcccatgacagagttctacgtaactaacgtagatacccataacaaaa-ccaaaaaatgaacgg 43950045  T
Q  208 attaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||         |||||||||||||||||||||||| |||||||||||    
T  43950046 attaaaatgctcaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 43950108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 100 - 271
Target Start/End: Complemental strand, 9651547 - 9651375
Alignment:
Q  100 acattacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaa 199  Q
    |||||||| || |||| | |||||||||| ||||||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||    
T  9651547 acattacactatcgaagtattcctcggcagttaactgtcgaggtttcccatgacagagttctacgtaactgacgtagttacccataacaaaa-ccaaaaa 9651449  T
Q  200 atgaacggattaaaatgctcaatacc--tcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||| |||||  |         |||||||||||||||||||||||| |||||||||||    
T  9651448 atgaacggattaaaatgctcgatacctgttttttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 9651375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 41008639 - 41008791
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  41008639 ttttccttggcagttaactgccgaggtttcccatgacagagttctacgtaactgacatagatacccataacaaaa-ccaaaaaatgaacagattaaaatg 41008737  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    || |||||||         |||||||||||||||||||||||| |||||||||||    
T  41008738 cttaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 41008791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 117 - 271
Target Start/End: Complemental strand, 435703 - 435552
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  435703 ttttcctcggcagttaactgctgaggtttcccatgacagagttctacgtaagtgacgtaaatacccataacaaaa-ccaaaaaatgaacggattaaaatg 435605  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||| |||         |||||||||||||||||||||||| |||| ||||||    
T  435604 ctcaatccct--tttttttacgtcaaaagtgtgttgatacctcctatgtttgatg 435552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 138 - 271
Target Start/End: Original strand, 24607311 - 24607442
Alignment:
Q  138 cgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnnac 237  Q
    ||||| |||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||         ||    
T  24607311 cgaggattcccatgacagagttctacgtaactgacgtagatacccataacaaaa-ccaaaaaatgaacggattaaaatgctcaatacct-gtttttttac 24607408  T
Q  238 gtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||| |||||||||||    
T  24607409 gtcaaaagtgtgttgatacctcctatgcttgatg 24607442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 41182918 - 41183038
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| ||||||  |||||||||||| ||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  41182918 tacactaccgatgttttcctcggcagttaactgtcgaggtttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaaatga 41183017  T
Q  204 acggattaaaatgctcaatac 224  Q
    ||  ||||||||| |||||||    
T  41183018 acatattaaaatgttcaatac 41183038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 34921504 - 34921587
Alignment:
Q  139 gaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaata 223  Q
    |||| |||| |||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34921504 gaggattcccatgacagagtcctacgtaactgacgtagatacccataacaaaa-ccaaaaaatgaacggattaaaatgctcaata 34921587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 27276075 - 27276240
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| |||||||||||||||||||| ||||||||||| | |||| ||||||| |||||||||||  ||||||||||||||||| || | ||||||||| |    
T  27276075 tacactaccgaaattttcctcggcagttaactgccgaagattcccatgacagggttctacgtaattgacgtagatacccataa-aatagccaaaaaatca 27276173  T
Q  204 acggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |  || |||||||| ||||| ||         |||||||||||||||||||||||| |||||||||||    
T  27276174 atcgaataaaatgcacaata-cttgtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 27276240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 271
Target Start/End: Complemental strand, 38946104 - 38945945
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggat 209  Q
    |||||| |||||||||| | ||||||||||||| || | |||||||||||||||||||||||||||||||||| ||| || || |||||||||||   |     
T  38946104 accgaagttttcctcggtagttaactgccgaggatttccatgacagagttctacgtaacagacgtagatacccctaa-aacacgcaaaaaatgaatcaaa 38946006  T
Q  210 taaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||| ||||||||         ||||||| |||||||||||||||| |||||||||||    
T  38946005 taaaatgcacaatacct-gtttttttacgtcaatagtgtgttgatacctcctatgcttgatg 38945945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 5335228 - 5335136
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  5335228 accgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 5335136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 10624171 - 10624263
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  10624171 accgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 10624263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 137 - 270
Target Start/End: Original strand, 19186954 - 19187085
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnna 236  Q
    |||||| |||| |||| || |||||||||||| |||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||         |    
T  19186954 ccgaggattcccatgatagggttctacgtaactgacgtagaaacccataacaaaa-ccaaaaaataaaccgattaaaatgctcaatacct-gttttttta 19187051  T
Q  237 cgtcaaaagtgtgttgatacctcttatgcttgat 270  Q
    ||||||| ||||||||||||||| ||||||||||    
T  19187052 cgtcaaatgtgtgttgatacctcctatgcttgat 19187085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 213165 - 213250
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  213165 ttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 213250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 24750015 - 24749933
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataa 186  Q
    |||| ||||||| |||||||||| | ||||||||||||| |||| ||||||| |||||||||||| |||||||||||||||||    
T  24750015 tacactaccgaagttttcctcggtagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccataa 24749933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 135 - 271
Target Start/End: Complemental strand, 1149804 - 1149670
Alignment:
Q  135 tgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnn 234  Q
    |||||||| |||| ||||||| |||||||||||| |||||||| |||||||||| || ||||||||| ||  || |||||||| ||||||||            
T  1149804 tgccgaggattcccatgacagggttctacgtaactgacgtagaaacccataacataa-ccaaaaaatcaatcgaataaaatgcacaatacct-gtttttt 1149707  T
Q  235 nacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
     |||||||||||||||||||||||| |||||||||||    
T  1149706 tacgtcaaaagtgtgttgatacctcctatgcttgatg 1149670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 271
Target Start/End: Original strand, 1100805 - 1100943
Alignment:
Q  132 aactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnn 231  Q
    ||||||||||| || | |||||||||||||||||||| |||||||| ||||||||| | | ||||||||| ||  || |||||||| ||||||||         
T  1100805 aactgccgaggatttccatgacagagttctacgtaactgacgtagaaacccataac-atatccaaaaaatcaatcgaataaaatgcacaatacctgtttt 1100903  T
Q  232 nnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
        |||||||||||||||||||||||| ||| |||||||    
T  1100904 tattacgtcaaaagtgtgttgatacctcctatacttgatg 1100943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 271
Target Start/End: Original strand, 3803279 - 3803432
Alignment:
Q  116 attttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaat 215  Q
    ||||||||||||| ||||||| ||||| |||| ||||||| ||||||||||||  |||||||||||||||| || |   ||||||| ||  || ||||||    
T  3803279 attttcctcggcagttaactgtcgaggattcccatgacagggttctacgtaactcacgtagatacccataa-aataataaaaaaatcaatcgaataaaat 3803377  T
Q  216 gctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    || ||||||||         |||||||||||||||||||||||| |||||||||||    
T  3803378 gcacaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 3803432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 275
Target Start/End: Original strand, 12908157 - 12908297
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaa-cagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnn 235  Q
    |||||| |||| ||||||||||||||||||| |  ||||| | ||||||||||||  | |||||||||||||||||||||| |||||||||             
T  12908157 ccgaggattcccatgacagagttctacgtaaactaacgtaaaaacccataacaaagtc-aaaaaatgaacggattaaaatgttcaatacctgtttttttt 12908255  T
Q  236 acgtcaaaagtgtgttgatacctc--ttatgcttgatgtttg 275  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  12908256 acgtcaaaagtgtgttgatacctcctatatgcttgatgtttg 12908297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 7263387 - 7263310
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataa 186  Q
    |||||| ||||| ||||||| ||||||||||||| |||| ||||||| ||||||||||||  ||||||||||||||||    
T  7263387 taccgagatttttctcggcagttaactgccgaggattcccatgacagggttctacgtaactcacgtagatacccataa 7263310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 271
Target Start/End: Original strand, 41053355 - 41053432
Alignment:
Q  193 ccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||| |||||||||||    
T  41053355 ccaaaaaatgaacggattaaaatgctcaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 41053432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 39794332 - 39794255
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataa 186  Q
    ||||||| ||| |||||||| ||||||||||||| |||| ||||||| ||||| ||||||  ||||||||||||||||    
T  39794332 taccgaagtttccctcggcagttaactgccgaggattcccatgacagggttctgcgtaactcacgtagatacccataa 39794255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 271
Target Start/End: Complemental strand, 45475755 - 45475622
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgt-aacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnn 235  Q
    ||||||||||| |||||||| |||||||| ||| |||||| | |||||||||  ||   ||||||||||||||||||||||||||||||||             
T  45475755 ccgaggtttcccatgacagaattctacgtaaactgacgtaaaaacccataac-gaaggaaaaaaatgaacggattaaaatgctcaatacct-gttttctt 45475658  T
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
     |||||||||||||||| |||||| |||||||||||    
T  45475657 tcgtcaaaagtgtgttggtacctcctatgcttgatg 45475622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 24749894 - 24749859
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||||||||||||||||||||||||||||    
T  24749894 acgtcaaaagtgtgttgatacctcttatgcttgatg 24749859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 104 - 271
Target Start/End: Complemental strand, 16050 - 15885
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| ||||||| |||||||||||| ||||||||||| |||||| |||||| ||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  16050 tacactaccgaagttttcctcggcagttaactgccgaagtttcccatgacatagttctacgtaactgacgtagatacccataacaaaa-tcaaaaaatga 15952  T
Q  204 acggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||| ||||||||         ||||||||||||||||||||||||||||||||||||    
T  15951 acggattaaaatgcacaatacct-gtttttttacgtcaaaagtgtgttgatacctcttatgcttgatg 15885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 2052328 - 2052493
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| ||||||  ||||||||| || |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  2052328 tacactaccgatgttttcctcgacagttaactgccgaggtttcccatgacagagttctacgtaactgacgtagatacccataacaaaa-ccaaaaaatga 2052426  T
Q  204 acggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||| |||||||||||||||||         |||||||||||||||||||||||| |||||||||||    
T  2052427 acggactaaaatgctcaatacct-gttttttgacgtcaaaagtgtgttgatacctcctatgcttgatg 2052493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 7363028 - 7363180
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  7363028 ttttcctcggcagttaacagccgaggtttcccatgacagagttctacgtaactgacgtagatacccataacaaaa-ccaaaaaataaacggattaaaatg 7363126  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||         |||||||||||||||||||||||| |||||||||||    
T  7363127 ctcaatacct-atttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 7363180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 117 - 271
Target Start/End: Complemental strand, 7361523 - 7361371
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  7361523 ttttcctgggcagttaactgccgaggtttcccatgacagagttctacgtaactgacgtagatacccataacaaaa-ccaaaaaatgaacggattaaaatg 7361425  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||         | |||||||||||||||||||||| |||| ||||||    
T  7361424 ctcaatacct-gtttttttatgtcaaaagtgtgttgatacctcctatgtttgatg 7361371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 109 - 271
Target Start/End: Complemental strand, 31146744 - 31146585
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    ||||||| |||||||||||| ||||| ||||||| |||  |||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  31146744 taccgaagttttcctcggcagttaaccgccgaggattctcatgacagagttctacgtaactgacgtagatacccataac-aaactcaaaaaatgaacgga 31146646  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||  ||        |||||||||||||||||||||||| |||||||||||    
T  31146645 ttaaaatgctcaata--tcttttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 31146585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 271
Target Start/End: Complemental strand, 18347383 - 18347224
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggat 209  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||| |||||||||   |     
T  18347383 accgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacaccccaaaaatgaatcaaa 18347285  T
Q  210 taaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||| ||||||||         ||||||| |||||||||||||||| |||||||||||    
T  18347284 taaaatgcacaatacct-gtttttttacgtcaatagtgtgttgatacctcctatgcttgatg 18347224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 26702147 - 26702027
Alignment:
Q  149 atgacagagttctacgtaaca-gacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtg 247  Q
    |||||||||||||||||||   |||||| | |||||||||||| || ||||||||||| ||||||||||||||||||||         ||||||||||||    
T  26702147 atgacagagttctacgtaaattgacgtaaaaacccataacaaagcc-aaaaaatgaacagattaaaatgctcaatacct--gttttttacgtcaaaagtg 26702051  T
Q  248 tgttgatacctcttatgcttgatg 271  Q
    |||||||||||| |||||||||||    
T  26702050 tgttgatacctcctatgcttgatg 26702027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 13388442 - 13388537
Alignment:
Q  130 ttaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacct 226  Q
    ||||||||||||| |||| ||||||| |||||||||||| ||||||| ||||||||| || ||||||||||| ||  || |||||||| ||||||||    
T  13388442 ttaactgccgaggattcccatgacagggttctacgtaactgacgtagttacccataa-aacacccaaaaaatcaatcgaataaaatgcacaatacct 13388537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 18606347 - 18606254
Alignment:
Q  176 gatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||| ||         |||||||||||||||||||||||| |||||||||||    
T  18606347 gatacccataacaaaacc-aaaaaatgaacgtattaaaatgctcaata-cttgtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 18606254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 28250223 - 28250136
Alignment:
Q  138 cgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacct 226  Q
    ||||| |||| ||||||| |||||||||||| ||||||||||||||||| || ||||||||||| ||  || |||||||| ||||||||    
T  28250223 cgaggattcccatgacagggttctacgtaactgacgtagatacccataa-aacacccaaaaaatcaatcgaataaaatgcacaatacct 28250136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 1612476 - 1612545
Alignment:
Q  133 actgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||||||| |||| ||||||| ||||||||||||  |||||||||||| ||| || |||||||||||||    
T  1612476 actgccgaggattcccatgacagggttctacgtaactaacgtagatacccctaa-aacacccaaaaaatga 1612545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 23985750 - 23985824
Alignment:
Q  151 gacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacct 226  Q
    ||||| |||||||||||| ||||| || ||||||||| |||  | |||||| ||||||||||||| ||||||||||    
T  23985750 gacagggttctacgtaactgacgttgaaacccataac-aaatgctaaaaataaacggattaaaatactcaatacct 23985824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 101 - 271
Target Start/End: Original strand, 877 - 1046
Alignment:
Q  101 cattacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaa 200  Q
    ||||||| ||| ||| |||||||||| | |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  877 cattacattacggaagttttcctcggtagttaactgccgaggtttcccatgacagagttctacgtaactgacgtagatacccataacaaaa-ccaaaaaa 975  T
Q  201 tgaacggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||| |||         |||||||||||||||||||||| | ||| |||||||    
T  976 tgaacggattaaaatgctcaatccctgttttttttacgtcaaaagtgtgttgataccacctatacttgatg 1046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 104 - 269
Target Start/End: Original strand, 6505674 - 6505838
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| |||| || |||||||||| | |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  6505674 tacactaccaaagttttcctcggtagttaactgccgaggtttcccatgacagagttctacgtaactgacgtagatacccataacaaaa-tcaaaaaatga 6505772  T
Q  204 acggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttga 269  Q
    |||||||||||||||||||||||         |||||||| ||||||||||||||| |||||||||    
T  6505773 acggattaaaatgctcaataccttttttttttacgtcaaatgtgtgttgatacctcctatgcttga 6505838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 117 - 271
Target Start/End: Complemental strand, 7837956 - 7837804
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    |||||||||||| ||||||| |||||||||| |||||||||| ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||    
T  7837956 ttttcctcggcagttaactgtcgaggtttcccatgacagagtactacgtaactgacgtagatacccataacaaaa-ctaaaaaatgaacggattaaaatg 7837858  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||         || ||||||||||||||||||||| |||||||||||    
T  7837857 ctcaatacct-gtttttttacttcaaaagtgtgttgatacctcctatgcttgatg 7837804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 117 - 270
Target Start/End: Original strand, 46992944 - 46993094
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    |||||||||||| ||||||||||| | |||| ||||||| |||||| ||||  || |||||||||||||| |||  ||||||||||||||||||||||||    
T  46992944 ttttcctcggcagttaactgccgatgattcccatgacagtgttctatgtaattgatgtagatacccataaaaaa--ccaaaaaatgaacggattaaaatg 46993041  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgat 270  Q
    ||||||||||         |||||||||||||||||||||||| ||||||||||    
T  46993042 ctcaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatgcttgat 46993094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 7842713 - 7842878
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| ||||||| |||||||||||| ||||||||||||| |||| |||| || |||||||||||| |||||||| ||||||||| | | ||||||||| |    
T  7842713 tacactaccgaagttttcctcggcagttaactgccgaggattcccatgatagggttctacgtaactgacgtagaaacccataac-atagccaaaaaatca 7842811  T
Q  204 acggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |  || |||||||| ||||||||         |||||||||||||||||||||||| |||||||||||    
T  7842812 atcgaataaaatgcacaatacct-atttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 7842878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 137 - 271
Target Start/End: Complemental strand, 29929769 - 29929635
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacc---tcnnnnnn 233  Q
    |||||| |||| ||||||| |||  ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |           
T  29929769 ccgaggattcccatgacagtgtt--acgtaactgacgtagatacccataacaaaacc-aaaaaatgaacggattaaaatgctcaatacctgatttttttt 29929673  T
Q  234 nnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
      |||||||||||||||||||||||| |||||||||||    
T  29929672 ttacgtcaaaagtgtgttgatacctcctatgcttgatg 29929635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 137 - 271
Target Start/End: Complemental strand, 29978923 - 29978789
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacc---tcnnnnnn 233  Q
    |||||| |||| ||||||| |||  ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |           
T  29978923 ccgaggattcccatgacagtgtt--acgtaactgacgtagatacccataacaaaacc-aaaaaatgaacggattaaaatgctcaatacctgatttttttt 29978827  T
Q  234 nnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
      |||||||||||||||||||||||| |||||||||||    
T  29978826 ttacgtcaaaagtgtgttgatacctcctatgcttgatg 29978789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 271
Target Start/End: Complemental strand, 6741230 - 6741071
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggat 209  Q
    |||||| ||| |||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    |     
T  6741230 accgaagtttccctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatgactcaaa 6741132  T
Q  210 taaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||| ||||||||         ||||||| |||||||||||||||| |||||||||||    
T  6741131 taaaatgcacaatacct-gtttttttacgtcaatagtgtgttgatacctcctatgcttgatg 6741071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 271
Target Start/End: Original strand, 9429553 - 9429712
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggat 209  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || ||||||||||| ||   |     
T  9429553 accgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatcaatcaaa 9429651  T
Q  210 taaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||| ||||||||         ||||||| |||||||||||||||| ||| |||||||    
T  9429652 taaaatgcacaatacct-gtttttttacgtcaatagtgtgttgatacctcctatacttgatg 9429712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 30947359 - 30947451
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  30947359 accgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 30947451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 23442845 - 23442996
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    |||||||||||||||||||||||||| |||| ||||||  |||||| ||||| ||||||||||||||||| || | || |||||| ||  || |||||||    
T  23442845 ttttcctcggcaattaactgccgaggattcccatgacaaggttctatgtaactgacgtagatacccataa-aatagcccaaaaatcaatcgaataaaatg 23442943  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    | ||||||||         ||||||||| |||||||||||||| |||||||||||    
T  23442944 cacaatacct--attttttacgtcaaaactgtgttgatacctcctatgcttgatg 23442996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 271
Target Start/End: Original strand, 48250573 - 48250733
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    ||||||| ||| ||||| || ||||||| ||||| |||| ||||||| |||||||||||| |||||||| |||||||| || ||||||||||| ||  ||    
T  48250573 taccgaagtttgcctcgacagttaactgtcgaggattcccatgacagggttctacgtaactgacgtagaaacccataa-aatacccaaaaaatcaatcga 48250671  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
     |||||||| ||||||||         ||||||||||| |||||||||||| |||||||||||    
T  48250672 ataaaatgcccaatacct-gtttttttacgtcaaaagtatgttgatacctcctatgcttgatg 48250733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 3949098 - 3949006
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||| |||||||||||| ||||||||||||| || | ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  3949098 accgaagttttcctcggcagttaactgccgaggatttccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 3949006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 8160701 - 8160793
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| | | || |||||||||||||    
T  8160701 accgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccct-ataacacccaaaaaatga 8160793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 271
Target Start/End: Original strand, 13747446 - 13747585
Alignment:
Q  130 ttaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnn 229  Q
    ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||||||| || ||||||||||| ||  || |||||||| ||||||||       
T  13747446 ttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccataa-aacacccaaaaaatcaatcgaataaaatgcacaatacct-gt 13747543  T
Q  230 nnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
          ||||||| |||||||||||||||| ||| |||||||    
T  13747544 ttttttacgtcaatagtgtgttgatacctcctatacttgatg 13747585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 271
Target Start/End: Complemental strand, 14398907 - 14398741
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaact-gccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatg 202  Q
    |||| ||| ||| |||||||||||| |||||| ||||||| |||  ||||||| |||||||||||| ||||||||||||||||| || | |||||||||     
T  14398907 tacactactgaagttttcctcggcagttaacttgccgaggattctcatgacagggttctacgtaactgacgtagatacccataa-aatagccaaaaaatc 14398809  T
Q  203 aacggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||  || |||||||| ||||||||         |||||||||||||||||||||||| |||| ||||||    
T  14398808 aatcgaataaaatgcacaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatgtttgatg 14398741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 21955943 - 21956068
Alignment:
Q  144 ttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnnacgtcaaa 243  Q
    |||||||||||||||||||||||||  | |||||||||||| |||||| ||||||||| || || | |||||| |||||||||         ||||||||    
T  21955943 ttcctatgacagagttctacgtaactcaggtagatacccat-acaaaaaccaaaaaataaatgggtaaaaatgttcaatacct-gtttttttacgtcaaa 21956040  T
Q  244 agtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||| |||||||||||    
T  21956041 agtgtgttgatacctcctatgcttgatg 21956068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 16444971 - 16444889
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataa 186  Q
    |||| ||||||| ||| |||||||| ||||||||||||| |||| ||||||| ||||||||||||  ||||||||||||||||    
T  16444971 tacactaccgaagtttccctcggcagttaactgccgaggattcccatgacagggttctacgtaactcacgtagatacccataa 16444889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 36817235 - 36817387
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    ||||| |||||| ||||||||||||| |||  ||||||  ||||||| |||| |||||| |||||||||| || ||||||||||| ||   | |||||||    
T  36817235 ttttcgtcggcagttaactgccgaggattctcatgacaaggttctacctaactgacgtaaatacccataa-aatacccaaaaaatcaatcaaataaaatg 36817333  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    | ||||||||         |||||||||||||||||||||||| |||||||||||    
T  36817334 cacaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 36817387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 138 - 271
Target Start/End: Complemental strand, 9582836 - 9582706
Alignment:
Q  138 cgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnnac 237  Q
    ||||| |||| ||||||||||| |||||||  |||||| | |||||||||||||  | ||| || ||| ||||||||||||||||||||         ||    
T  9582836 cgaggattcccatgacagagttatacgtaattgacgtaaaaacccataacaaaa-gctaaatatcaaccgattaaaatgctcaatacct--gttttttac 9582740  T
Q  238 gtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||| |||||||||||    
T  9582739 gtcaaaagtgtgttgatacctcctatgcttgatg 9582706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 28610819 - 28610925
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaaca-gacgtagatacccataacaaaacccaaaaaatgaacggattaaaat 215  Q
    |||||||||||| | |||| |||| |||| |||||||| ||||||||||||   |||||| | ||| |||||||| || |||||||||||||||||||||    
T  28610819 ttttcctcggcagtaaactaccgacgttttctatgacatagttctacgtaaattgacgtaaaaacc-ataacaaagcc-aaaaaatgaacggattaaaat 28610916  T
Q  216 gctcaatac 224  Q
    |||||||||    
T  28610917 gctcaatac 28610925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 2745059 - 2745094
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  2745059 acgtcaaaagtgtgttgatacctcctatgcttgatg 2745094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 50953519 - 50953487
Alignment:
Q  239 tcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||||||||||||| |||||||||||    
T  50953519 tcaaaagtgtgttgatacctcctatgcttgatg 50953487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 7041 - 7179
Alignment:
Q  131 taactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnn 230  Q
    |||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        
T  7041 taactgccgaggattcccatgacagagttctacgtaactgacgtagatacccataacaaaa-ccaaaaaatgaacggattaaaatgctcaatacct-gtt 7138  T
Q  231 nnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
         |||||||||||||||||||||||| |||||||||||    
T  7139 tttttacgtcaaaagtgtgttgatacctcctatgcttgatg 7179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 104 - 270
Target Start/End: Original strand, 39752723 - 39752886
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| ||||||  |||| |||| || |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  39752723 tacactaccgatgtttttctcgacagttaactgccgaggtttcccatgacagagttctacgtaactgacgtagatacccataacaaaa-ccaaaaaatga 39752821  T
Q  204 acggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgat 270  Q
    | |||||||||||||||||||||         | |||||||||||||||||||||| ||||||||||    
T  39752822 atggattaaaatgctcaatacct--gttttttatgtcaaaagtgtgttgatacctcctatgcttgat 39752886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 135 - 271
Target Start/End: Original strand, 2146687 - 2146821
Alignment:
Q  135 tgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnn 234  Q
    ||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||            
T  2146687 tgccgaggtttcccatgacagagttctacgtaacggacatagatacccataacaaaa-ccaaaaaatgaacggattaaaatgctcaatacct-gtttttt 2146784  T
Q  235 nacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
     |||||||||||||||||||||||| |||||||||||    
T  2146785 gacgtcaaaagtgtgttgatacctcctatgcttgatg 2146821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 137 - 271
Target Start/End: Complemental strand, 18206125 - 18205994
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnna 236  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||  ||        |    
T  18206125 ccgaggtttcccatgacagagttctacgtaactgacgtagatacccataacaaaa-ccaaaaaatgaatggattaaaatgctcaata--tctgtttttta 18206029  T
Q  237 cgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||||||| ||||||| |||||||||||    
T  18206028 cgtcaaaagtgtgttaatacctcctatgcttgatg 18205994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 7168294 - 7168209
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaata 223  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| ||||||||| ||| |||||||||||||||||    
T  7168294 ccgaggtttcccatgacagagttctacgtaactgacgtagatactcataacaaaa-ccaaaaaataaaccgattaaaatgctcaata 7168209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 117 - 267
Target Start/End: Complemental strand, 43370141 - 43369993
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    |||||||||||| |  ||| |||| |||| | ||||||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||||||||    
T  43370141 ttttcctcggcactacactaccgaagttttccatgacagagttctacgtaactaacgtagatactcataacaaaa-ccaaaaaatgaacggattaaaatg 43370043  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgctt 267  Q
     |||||||||         | |||||||||||||||||||||| |||||||    
T  43370042 ttcaatacct-gtttttttaggtcaaaagtgtgttgatacctcctatgctt 43369993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 271
Target Start/End: Original strand, 8423541 - 8423698
Alignment:
Q  112 cgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggatta 211  Q
    |||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    | ||    
T  8423541 cgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatgactcaaata 8423639  T
Q  212 aaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||| ||||||||         ||||||| |||||||||||||||| |||||||||||    
T  8423640 aaatgcacaatacct-gtttttttacgtcaatagtgtgttgatacctcctatgcttgatg 8423698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 271
Target Start/End: Complemental strand, 20547138 - 20546977
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    ||||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| | | || ||||||| ||  ||    
T  20547138 taccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccgtaaaatacccaaaaaaatcaatcga 20547039  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
     |||||||| | ||||||         ||||||||||||| |||||||||| |||||||||||    
T  20547038 ataaaatgcactatacct-gtttttttacgtcaaaagtgtattgatacctcctatgcttgatg 20546977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 32378627 - 32378719
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  32378627 accgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 32378719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 32432582 - 32432674
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  32432582 accgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 32432674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 7340434 - 7340342
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||| |||||||||||| ||||||||||||| || | ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  7340434 accgaagttttcctcggcagttaactgccgaggatttccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 7340342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 271
Target Start/End: Complemental strand, 1115111 - 1114952
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggat 209  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||||| ||||||||||||  | |||||||||||||| || |   ||||||| ||  ||     
T  1115111 accgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactcatgtagatacccataa-aataataaaaaaatcaatcgaa 1115013  T
Q  210 taaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||| ||||||||         |||||||| ||||||||||||||| |||||||||||    
T  1115012 taaaatgcacaatacct-gtttttttacgtcaaatgtgtgttgatacctcctatgcttgatg 1114952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 271
Target Start/End: Original strand, 35966469 - 35966614
Alignment:
Q  124 cggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaata 223  Q
    ||||| ||||||||||||| ||   ||||||| |||||||||||| |||||||| |||||||||| || ||||||||| ||  || |||||||| |||||    
T  35966469 cggcagttaactgccgaggattttcatgacagggttctacgtaactgacgtagaaacccataacataa-ccaaaaaatcaatcgaataaaatgcacaata 35966567  T
Q  224 cctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||         |||| ||||||||||||||||||| |||||||||||    
T  35966568 cct-gtttttttacgttaaaagtgtgttgatacctcctatgcttgatg 35966614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 45454748 - 45454653
Alignment:
Q  130 ttaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacct 226  Q
    |||||| |||||| |||| ||||||| |||||||||||| |||||||| |||||||||| || ||||||||| ||  || |||||||| ||||||||    
T  45454748 ttaactaccgaggattcccatgacagggttctacgtaactgacgtagaaacccataacataa-ccaaaaaatcaatcgaataaaatgcacaatacct 45454653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 22578007 - 22577918
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaa-cagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacct 226  Q
    |||||| |||| |||| |||||||||||||| | |||||| | |||||||||||| || ||||| |||||||||||||||| |||||||||    
T  22578007 ccgaggattcccatgatagagttctacgtaaactgacgtaaaaacccataacaaagcctaaaaa-tgaacggattaaaatgttcaatacct 22577918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 30305302 - 30305367
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  30305302 ccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 30305367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 4866678 - 4866643
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||| |||||||||||||||    
T  4866678 acgtcaaaagtgtgttgatatctcttatgcttgatg 4866643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 31958051 - 31958016
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  31958051 acgtcaaaagtgtgttgatacctcctatgcttgatg 31958016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 43689830 - 43689865
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  43689830 acgtcaaaagtgtgttgatacctcctatgcttgatg 43689865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 22577904 - 22577872
Alignment:
Q  239 tcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||||||||||||| |||||||||||    
T  22577904 tcaaaagtgtgttgatacctcctatgcttgatg 22577872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 104 - 271
Target Start/End: Complemental strand, 28387642 - 28387477
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| ||||||| ||||||| |||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||||||| || | |||||||||||    
T  28387642 tacactaccgaagttttccttggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccataa-aataaccaaaaaatga 28387544  T
Q  204 acggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||         | |||||||||||||||||||||| |||||||||||    
T  28387543 acggattaaaatgctcaatacct-gtttttttatgtcaaaagtgtgttgatacctcctatgcttgatg 28387477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 4203922 - 4204074
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    |||||||||||| ||||||| ||||||||||  |||||  |||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  4203922 ttttcctcggcagttaactgtcgaggtttcccttgacatggttctatgtaactgacgtagatacccataacaaaa-ccaaaaaatgaacggattaaaatg 4204020  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||         |||||||||||||||||||||||| |||||||||||    
T  4204021 ctcaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 4204074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 31098630 - 31098752
Alignment:
Q  101 cattacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaa 200  Q
    ||||||| ||| ||| ||||||||| || |||||||||||||||||  || ||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  31098630 cattacactactgaagttttcctcgacagttaactgccgaggtttcgcataacagagttctacgtaactgacgtagatacccataacaaaa-tcaaaaaa 31098728  T
Q  201 tgaacggattaaaatgctcaatac 224  Q
    | ||| ||||||||||||||||||    
T  31098729 ttaacagattaaaatgctcaatac 31098752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 117 - 271
Target Start/End: Complemental strand, 33993640 - 33993488
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    |||||||| ||| | |||| |||||||||||  ||||| |||||||| |||| |||||||||||||||||||| | |||||||||| |||||||||||||    
T  33993640 ttttcctctgcagtaaactaccgaggtttcccgtgacaaagttctacataactgacgtagatacccataacaaga-ccaaaaaatgtacggattaaaatg 33993542  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||         |||||||||||||||||||||||| |||||||||||    
T  33993541 ctcaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 33993488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 109 - 271
Target Start/End: Original strand, 34123625 - 34123785
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    ||||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| |||||||| |||||||||| || ||||||||| ||  ||    
T  34123625 taccgaagttttcctcggcatttaactgccgaggattcccatgacagtgttctacgtaactgacgtagaaacccataacataa-ccaaaaaatcaatcga 34123723  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
     |||||||| ||||||||         |||||||||||||||||||||||| |||||||||||    
T  34123724 ataaaatgcacaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 34123785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 271
Target Start/End: Original strand, 37820587 - 37820746
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggat 209  Q
    |||||| |||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || ||||||||||||||   |     
T  37820587 accgaagttttcctcggcaattaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatgaatcaaa 37820685  T
Q  210 taaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||| ||||||||         ||||||| |||||||||||||||| |||||||||||    
T  37820686 taaaatgcacaatacct-gtttttttacgtcaatagtgtgttgatacctcctatgcttgatg 37820746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 27867546 - 27867711
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| ||||||| ||| |||||||| ||||||||||||| |||| |||| || |||||||||||| ||||||||||||||||| || ||||||||||| |    
T  27867546 tacactaccgaagtttccctcggcagttaactgccgaggattcccatgatagggttctacgtaactgacgtagatacccataa-aacacccaaaaaatca 27867644  T
Q  204 acggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |  || |||||||||||||||||         ||||||| |||||||||||||||| |||||||||||    
T  27867645 atcgaataaaatgctcaatacct-gtttttttacgtcaatagtgtgttgatacctcctatgcttgatg 27867711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 271
Target Start/End: Original strand, 13567806 - 13567966
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    ||||||| |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||||||| || ||||||||||| ||  ||    
T  13567806 taccgaagttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccataa-aacacccaaaaaatcaatcga 13567904  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
     |||||||| ||||||||         ||||||| |||||||||||||||  |||||||||||    
T  13567905 ataaaatgcacaatacct-gtttttttacgtcaatagtgtgttgataccttctatgcttgatg 13567966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 271
Target Start/End: Complemental strand, 34078140 - 34077975
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| ||||||| ||| |||||||| ||||||||||||| |||| ||||||| |||||||||||| ||| ||||||||||||| || | ||||||||| |    
T  34078140 tacactaccgaagtttccctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacatagatacccataa-aacatccaaaaaatca 34078042  T
Q  204 acggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |  || |||||||| ||||||||         ||||||| |||||||||||||||| |||||||||||    
T  34078041 atcgaataaaatgcacaatacct-gtctttttacgtcaatagtgtgttgatacctcctatgcttgatg 34077975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 271
Target Start/End: Original strand, 7021589 - 7021749
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    ||||||| |||||||||||| ||||||| ||||| |||| ||||||| |||||||||||| ||||||||||||||||| || ||||||||||| ||  ||    
T  7021589 taccgaagttttcctcggcagttaactgtcgaggattcccatgacagggttctacgtaactgacgtagatacccataa-aacacccaaaaaatcaatcga 7021687  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
     |||||||  ||||||||         ||||||| |||||||||||||||| |||| ||||||    
T  7021688 ataaaatgaacaatacct-gtttttttacgtcaatagtgtgttgatacctcctatgtttgatg 7021749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 271
Target Start/End: Original strand, 25896811 - 25896945
Alignment:
Q  133 actgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnn 232  Q
    |||||||||| |||| ||||||| |||||||||||| ||||||||||||||||| || ||||||||||| ||  || |||||||| ||||||||          
T  25896811 actgccgaggattcccatgacagggttctacgtaactgacgtagatacccataa-aatacccaaaaaatcaatcgaataaaatgcacaatacct---gtt 25896906  T
Q  233 nnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
       |||||||||||||||||||||||| |||||||||||    
T  25896907 tttacgtcaaaagtgtgttgatacctcctatgcttgatg 25896945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 271
Target Start/End: Original strand, 28886125 - 28886284
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggat 209  Q
    |||||| ||| |||||||| ||||||||||||| |||| ||||| | |||||||||||| ||||||||||||| ||| || ||||||||||| ||   |     
T  28886125 accgaagtttccctcggcagttaactgccgaggattcccatgaccgggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatcaatcaaa 28886223  T
Q  210 taaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||| ||||||||         ||||||| |||||||||||||||| |||||||||||    
T  28886224 taaaatgcacaatacct-gtttttttacgtcaatagtgtgttgatacctcctatgcttgatg 28886284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 271
Target Start/End: Original strand, 7800699 - 7800851
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    |||||||||||| |  ||| |||| |||| |||||| ||||||  ||||||| |||||| | || |||||||||| |||||||||||| || ||||||||    
T  7800699 ttttcctcggcactacactaccgaagttttctatgatagagtttgacgtaactgacgtaaagactcataacaaaa-ccaaaaaatgaaagggttaaaatg 7800797  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||         |||||||||||||||||||||||| |||| ||||||    
T  7800798 ctcaatacct-gtttttttacgtcaaaagtgtgttgatacctcctatgtttgatg 7800851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 11033167 - 11033244
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataa 186  Q
    ||||||| ||| |||||||| ||||||||||||| |||| ||||||| ||||||||||||  ||||||||||||||||    
T  11033167 taccgaagtttccctcggcagttaactgccgaggattcccatgacagggttctacgtaactcacgtagatacccataa 11033244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 38859906 - 38859983
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataa 186  Q
    ||||||| ||| |||||||| ||||||||||||| |||| ||||||| ||||||||||||  ||||||||||||||||    
T  38859906 taccgaagtttccctcggcagttaactgccgaggattcccatgacagggttctacgtaactcacgtagatacccataa 38859983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 267
Target Start/End: Original strand, 18538075 - 18538194
Alignment:
Q  149 atgacagagttctacgtaa-cagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacct-cnnnnnnnnacgtcaaaagt 246  Q
    ||||||||||||||||||| | |||||| | |||||||||||| || |||||||||| |||||||||||||||||||||          |||||||||||    
T  18538075 atgacagagttctacgtaaactgacgtaaaaacccataacaaagcc-aaaaaatgaatggattaaaatgctcaatacctgtttttttttacgtcaaaagt 18538173  T
Q  247 gtgttgatacctcttatgctt 267  Q
    ||||||||||||| |||||||    
T  18538174 gtgttgatacctcctatgctt 18538194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 30354129 - 30354213
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaata 223  Q
    |||||| |||| ||||||| |||||||||||| |||||||| ||||||||||||  ||||||||| ||| |||||||||| ||||||    
T  30354129 ccgaggattccgatgacagggttctacgtaactgacgtagaaacccataacaaa--ccaaaaaataaactgattaaaatgttcaata 30354213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 1035427 - 1035392
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  1035427 acgtcaaaagtgtgttgatacctcctatgcttgatg 1035392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 21999297 - 21999262
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  21999297 acgtcaaaagtgtgttgatacctcctatgcttgatg 21999262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 34944083 - 34944048
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  34944083 acgtcaaaagtgtgttgatacctcctatgcttgatg 34944048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 5650 - 5530
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| ||||||  |||||||||||| ||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  5650 tacactaccgatgttttcctcggcagttaactgtcgaggtttcccatgacagagttctacgtaactgacgtagatacccataacaaaaccaaaaaaatga 5551  T
Q  204 acggattaaaatgctcaatac 224  Q
    ||  ||||||||| |||||||    
T  5550 acatattaaaatgttcaatac 5530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 47061261 - 47061136
Alignment:
Q  144 ttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnnacgtcaaa 243  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||         ||||||||    
T  47061261 ttcccatgacagagttctacgtaactgacgtagatacccataacaaaa-ccaaaaaatgaacggattaaaatgctcaatacct-gtttttttacgtcaaa 47061164  T
Q  244 agtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||| |||||||||||    
T  47061163 agtgtgttgatacctcctatgcttgatg 47061136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 45763740 - 45763655
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||||||||| ||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  45763740 ttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 45763655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 43623852 - 43623944
Alignment:
Q  110 accgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||||| |||||||||||| ||||||||||||| |||| ||| ||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  43623852 accgaagttttcctcggcagttaactgccgaggattcccatgccagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 43623944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 111 - 271
Target Start/End: Complemental strand, 18105740 - 18105582
Alignment:
Q  111 ccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggatt 210  Q
    ||||| |||||||||||| |||||||| |||| |||| ||||||| |||||| ||||| ||||||||||||| ||| || ||||||||||| ||   | |    
T  18105740 ccgaagttttcctcggcagttaactgctgaggattcccatgacagggttctatgtaactgacgtagatacccctaa-aacacccaaaaaatcaatcaaat 18105642  T
Q  211 aaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||| ||||||||         ||||||| |||||||||||||||| |||||||||||    
T  18105641 aaaatgcacaatacct-gtttttttacgtcaatagtgtgttgatacctcctatgcttgatg 18105582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 47742043 - 47741946
Alignment:
Q  172 cgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||         ||||||||||||| |||||||||| |||||||||||    
T  47742043 cgtagatacccataaaaaaacc-aaaaaatgaacggattaaaatgctcaatacct-gtttttttacgtcaaaagtgtcttgatacctcctatgcttgatg 47741946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 271
Target Start/End: Original strand, 618455 - 618615
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    ||||||| |||||||||||| ||||||||| ||| |||| ||||||| ||||||||||||  |||||||||||| ||| |  ||||||||||||||   |    
T  618455 taccgaagttttcctcggcagttaactgccaaggattcccatgacagggttctacgtaactaacgtagatacccctaa-agcacccaaaaaatgaatcaa 618553  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
     |||||||| ||||| ||         ||||||| |||||||||||||||| |||||||||||    
T  618554 ataaaatgcacaatatct-gtttttttacgtcaatagtgtgttgatacctcctatgcttgatg 618615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 15059973 - 15059896
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataa 186  Q
    ||||||| |||||||||||| ||||||||||||| |||| ||||||  ||||||||||||  ||||||||||||||||    
T  15059973 taccgaagttttcctcggcagttaactgccgaggattcccatgacatggttctacgtaactcacgtagatacccataa 15059896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 30786863 - 30786800
Alignment:
Q  139 gaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| |||| ||||||| |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  30786863 gaggattcccatgacagggttctacgtaactgacgtagatacccctaa-aacacccaaaaaatga 30786800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 10708110 - 10708145
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  10708110 acgtcaaaagtgtgttgatacctcctatgcttgatg 10708145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 29593184 - 29593219
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  29593184 acgtcaaaagtgtgttgatacctcctatgcttgatg 29593219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 36186038 - 36186003
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  36186038 acgtcaaaagtgtgttgatacctcctatgcttgatg 36186003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 271
Target Start/End: Original strand, 11447 - 11607
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacgga 208  Q
    ||||||||||| | |||| | | | || |||||| |||| |||||||||||||||||||| |||||||||||| ||||||||| ||||||||| ||| ||    
T  11447 taccgaaatttacttcggtagtaatctaccgaggattcccatgacagagttctacgtaactgacgtagatacctataacaaaa-ccaaaaaataaaccga 11545  T
Q  209 ttaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||||||||||         | |||||||||||||||||||||| |||||||||||    
T  11546 ttaaaatgctcaatacct-gtttttttatgtcaaaagtgtgttgatacctcgtatgcttgatg 11607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 271
Target Start/End: Original strand, 591 - 724
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnna 236  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||||||||| ||| |||||||||  |||||||||         |    
T  591 ccgaggtttcccatgacaaagttctacgtaactgacgtagatacccataacaaaa-ccaaaaaataaaccgattaaaattttcaatacctgtttttttta 689  T
Q  237 cgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||| |||||||||||||||||||| |||||    
T  690 cgtcaaaaatgtgttgatacctcttatgcctgatg 724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 4100 - 4265
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatga 203  Q
    |||| ||||||| |||||||||||| ||||||||||||| |||| |||||||  ||||||||||| |||||||| |||||||| || | ||||||||| |    
T  4100 tacactaccgaagttttcctcggcagttaactgccgaggattcccatgacaggattctacgtaactgacgtagaaacccataa-aataaccaaaaaatca 4198  T
Q  204 acggattaaaatgctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |  || |||||||| |||||| |         |||||||||||||||||||||||| |||||||||||    
T  4199 aacgaataaaatgcacaatacat-gtttttttacgtcaaaagtgtgttgatacctcctatgcttgatg 4265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 17072 - 17149
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataa 186  Q
    |||||| ||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||  ||||||||||||||||    
T  17072 taccgagattttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactcacgtagatacccataa 17149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 17180 - 17215
Alignment:
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  17180 acgtcaaaagtgtgttgatacctcctatgcttgatg 17215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 271
Target Start/End: Complemental strand, 1219 - 1067
Alignment:
Q  117 ttttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatg 216  Q
    |||||||||||| ||||||||||||| |||| ||||||| ||||||||||||  |||||||||||||||| || |   ||||||| ||  || |||||||    
T  1219 ttttcctcggcagttaactgccgaggattcccatgacagggttctacgtaactcacgtagatacccataa-aataataaaaaaatcaatcgaataaaatg 1121  T
Q  217 ctcaatacctcnnnnnnnnacgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    | ||||||||         |||||||| ||||||||||||||| |||||||||||    
T  1120 cacaatacct-gtttttttacgtcaaatgtgtgttgatacctcctatgcttgatg 1067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 126 - 203
Alignment:
Q  109 taccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataa 186  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||||||| ||||||| ||||  ||||||||||||||||    
T  126 taccgaaactttcctcggcacttaactgccgaggattcccatgacagggttctacataactcacgtagatacccataa 203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 271
Target Start/End: Complemental strand, 11612 - 11482
Alignment:
Q  139 gaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnnacg 238  Q
    |||| |||| ||||||| |||||||||||| ||||||||||||||||| || | ||||||||| ||  || |||||||| ||||||||         |||    
T  11612 gaggattcccatgacagggttctacgtaactgacgtagatacccataa-aatagccaaaaaatcaatcgaataaaatgcacaatacct-gtttttgtacg 11515  T
Q  239 tcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    ||||||||||||||||||||| |||||||||||    
T  11514 tcaaaagtgtgttgatacctcctatgcttgatg 11482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 50385 - 50298
Alignment:
Q  138 cgaggtttcctatgacagagttctacgtaacagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacct 226  Q
    ||||| |||| ||||||| |||||||||||| ||||||||||||||||| || ||||||||||| ||  || |||||||| ||||||||    
T  50385 cgaggattcccatgacagggttctacgtaactgacgtagatacccataa-aacacccaaaaaatcaatcgaataaaatgcacaatacct 50298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 271
Target Start/End: Original strand, 22976 - 23107
Alignment:
Q  137 ccgaggtttcctatgacagagttctacgtaa-cagacgtagatacccataacaaaacccaaaaaatgaacggattaaaatgctcaatacctcnnnnnnnn 235  Q
    |||||| |||| ||||||||||||||||||| | |||||| | ||| |||||||| || ||||||||| || |||||||||||||||||||             
T  22976 ccgaggattcccatgacagagttctacgtaaactgacgtaaaaacc-ataacaaagcc-aaaaaatgagcg-attaaaatgctcaatacct-gttttttt 23071  T
Q  236 acgtcaaaagtgtgttgatacctcttatgcttgatg 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  23072 acgtcaaaagtgtgttgatacctcctatgcttgatg 23107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 33160 - 33078
Alignment:
Q  104 tacaataccgaaattttcctcggcaattaactgccgaggtttcctatgacagagttctacgtaacagacgtagatacccataa 186  Q
    |||| ||||||| ||| |||||||| ||||||||||||| |||| ||||||  ||||||||||||  ||||||| ||||||||    
T  33160 tacactaccgaagtttccctcggcagttaactgccgaggattcccatgacatggttctacgtaactcacgtagaaacccataa 33078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University