View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18606_low_14 (Length: 270)
Name: NF18606_low_14
Description: NF18606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18606_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 27820432 - 27820183
Alignment:
| Q |
6 |
agcagcacagagaccagaatgagcaagagcaaagacaatattcttagcagcaacgatctcaacaaccttagttcttttcatcaaaaaaggcaaaaagggt |
105 |
Q |
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| T |
27820432 |
agcagcacaaagaccagaatgagcaagagcaaagacaatattcttagcagcaacgatctcaacaaccttagttcttttcatcaaaaaaggcaaaaagggt |
27820333 |
T |
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| Q |
106 |
gaaggagaagaatgatgtttaggatcatgagtatcaaattgatgagttaaacgcatgttctggaatctatgtggtgaagtagcagcaacaaaggaacgat |
205 |
Q |
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| T |
27820332 |
gaaggagaagaatgatgtttaggatcatgagtatcaaattgatgagtcaaacgcatgttctggaatctatgtggtgaagtagcagcaacaaaggaacgat |
27820233 |
T |
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| Q |
206 |
gaggtttaggagaaatctcgcgagtttgaagcttcttgatgatgtttttg |
255 |
Q |
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| T |
27820232 |
gaggtttaggagaaatctcgcgagtttgaagcttcttgatgatgtttttg |
27820183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 251
Target Start/End: Complemental strand, 42534937 - 42534806
Alignment:
| Q |
120 |
atgtttaggatcatgagtatcaaattgatgagttaaacgcatgttctggaatctatgtggtgaagtagcagcaacaaaggaacgatgaggtttaggagaa |
219 |
Q |
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| T |
42534937 |
atgtttagaatgatgagtgtcaagttcatgactgaaacgcatgttttggaatctatgtggagtagtagcagtaacaaaagcacgatgatgtttacaagat |
42534838 |
T |
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| Q |
220 |
atctcgcgagtttgaagcttcttgatgatgtt |
251 |
Q |
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| T |
42534837 |
aactcgcggtcttgaaggttcttgatgatgtt |
42534806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 42528315 - 42528234
Alignment:
| Q |
170 |
atctatgtggtgaagtagcagcaacaaaggaacgatgaggtttaggagaaatctcgcgagtttgaagcttcttgatgatgtt |
251 |
Q |
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|||||||||| | |||| |||||||||| | |||||||||||||| ||| | |||||| |||||| |||||||||||||| |
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| T |
42528315 |
atctatgtggggcagtaacagcaacaaaagcacgatgaggtttagaagataactcgcggtcttgaaggttcttgatgatgtt |
42528234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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