View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18606_low_15 (Length: 269)
Name: NF18606_low_15
Description: NF18606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18606_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 180187 - 179936
Alignment:
| Q |
1 |
ggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtattcaggattgggagcatagaca |
100 |
Q |
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| T |
180187 |
ggagatgatgtcagcctttgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtattcaggattgggagcatagaca |
180088 |
T |
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| Q |
101 |
ccattgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccat-acttcgataccagcaagcagggtagtgacttgacgtttccaag |
199 |
Q |
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| T |
180087 |
ccgttgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccataacttcgataccagcaagcagggtagtgacttgacgtttccaag |
179988 |
T |
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| Q |
200 |
cacgaaaatttttgcgagacaatttgaacttgattgaggcatttagaataag |
251 |
Q |
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| T |
179987 |
cacgaaaatttttgctagacaatttgaacgtgattgaggcatttagaataag |
179936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 1700571 - 1700313
Alignment:
| Q |
1 |
ggagatgatgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtattcaggattgggagcatagaca |
100 |
Q |
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| T |
1700571 |
ggagatgctgtcagcctctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtaatcaggattgggagcagagaca |
1700472 |
T |
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| Q |
101 |
ccattgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccat-acttcgataccagcaagcagggtagtgacttgacgtttccaag |
199 |
Q |
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| T |
1700471 |
ccgttgttgataatagtttctgtttgaattggtgtggttccgtctatgtgacccataacttcgataccagcaagcagggtagtgacttgacgtttccaag |
1700372 |
T |
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| Q |
200 |
cacgaaaatttttgcgagacaatttgaacttgattgaggcatttagaataagtgatgat |
258 |
Q |
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| T |
1700371 |
cacggaaatttttgcgagacagtttgaacgtgattgaggcatttagaataagagatgat |
1700313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 5399324 - 5399261
Alignment:
| Q |
17 |
tctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtatt |
80 |
Q |
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| T |
5399324 |
tctgtcatagaggagataagaagattgatgatgagttgatcaatagtgaaccaatttgtgtatt |
5399261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 3540321 - 3540258
Alignment:
| Q |
17 |
tctgtcatggaggagagaagaagattgatgattagctgatcaagagtgaaccactttgtgtatt |
80 |
Q |
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| T |
3540321 |
tctgtcataaaggagataagaagattgatgatgagttggtcaatagtgaaccaatttgtgtatt |
3540258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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