View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18606_low_17 (Length: 240)
Name: NF18606_low_17
Description: NF18606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18606_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 13372943 - 13372735
Alignment:
| Q |
1 |
aacactgttcattatgttataggctgtaatggacacccttgatggtattattgacactgtttcagcactccatccactaatgcccttgatgggtttattg |
100 |
Q |
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| T |
13372943 |
aacactgttcattatgttataggctgtaatgggcacctttgatggtattattgacactgtttcagcactccatccactaatgcccttgatgggtttattg |
13372844 |
T |
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| Q |
101 |
aagaatcatggtaaacttgttatggttggagctccagaaaagcctttggagcttcctgcattttctttaattggaggtaagcatatagaaaacaatgtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13372843 |
aagaatcatggtaaacttgttatggttggagctccagagaagcctttggagcttcctgcattttctttaattggaggtaagcatatagaaaacaatgtca |
13372744 |
T |
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| Q |
201 |
ttataccct |
209 |
Q |
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||||||||| |
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| T |
13372743 |
ttataccct |
13372735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 13378693 - 13378513
Alignment:
| Q |
6 |
tgttcattatgttataggctgtaatggacacccttgatggtattattgacactgtttcagcactccatccactaatgcccttgatgggtttattgaagaa |
105 |
Q |
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|||||| |||||||||||||||||||| || ||||||| || || ||||||||||||||||||||||| |||||||| ||| | ||| |||||||||| |
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| T |
13378693 |
tgttcaatatgttataggctgtaatgggaacgtttgatggaatcatcgacactgtttcagcactccatcctctaatgcctttgcttggtctattgaagaa |
13378594 |
T |
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| Q |
106 |
tcatggtaaacttgttatggttggagctccagaaaagcctttggagcttcctgcattttctttaattggaggtaagcatat |
186 |
Q |
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| T |
13378593 |
taatggtaaacttgttatggttggagctccagagaagcctttggagtttccagtattttctttgattgtgggtaagcatat |
13378513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 13419055 - 13419008
Alignment:
| Q |
139 |
aaagcctttggagcttcctgcattttctttaattggaggtaagcatat |
186 |
Q |
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||||||| | |||||||||| |||||||||| |||||||||||||||| |
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| T |
13419055 |
aaagcctctagagcttcctgtattttctttacttggaggtaagcatat |
13419008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 13425945 - 13425898
Alignment:
| Q |
139 |
aaagcctttggagcttcctgcattttctttaattggaggtaagcatat |
186 |
Q |
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||||||| | |||||||||| |||||||||| |||||||||||||||| |
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| T |
13425945 |
aaagcctctagagcttcctgtattttctttacttggaggtaagcatat |
13425898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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