View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18606_low_18 (Length: 240)
Name: NF18606_low_18
Description: NF18606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18606_low_18 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 3353 - 3560
Alignment:
| Q |
14 |
agacatgcgattgtgagctgannnnnnnaatgcatgcatataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttat |
113 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3353 |
agacatgcgattgtgagctgatttttttaatgcatgcatataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttat |
3452 |
T |
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| Q |
114 |
accttgtctgagctgaaggaacaaaaagactcacatttatttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3453 |
accttgtctgagctgaaggaacaaaaagactcacatttatttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttc |
3552 |
T |
|
| Q |
214 |
catgacag |
221 |
Q |
| |
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|||||||| |
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| T |
3553 |
catgacag |
3560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 3353 - 3560
Alignment:
| Q |
14 |
agacatgcgattgtgagctgannnnnnnaatgcatgcatataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttat |
113 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3353 |
agacatgcgattgtgagctgatttttttaatgcatgcatataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttat |
3452 |
T |
|
| Q |
114 |
accttgtctgagctgaaggaacaaaaagactcacatttatttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3453 |
accttgtctgagctgaaggaacaaaaagactcacatttatttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttc |
3552 |
T |
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| Q |
214 |
catgacag |
221 |
Q |
| |
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|||||||| |
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| T |
3553 |
catgacag |
3560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 44371499 - 44371292
Alignment:
| Q |
14 |
agacatgcgattgtgagctgannnnnnnaatgcatgcatataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttat |
113 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44371499 |
agacatgcgattgtgagctgatttttttaatgcatgcatataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttat |
44371400 |
T |
|
| Q |
114 |
accttgtctgagctgaaggaacaaaaagactcacatttatttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttc |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44371399 |
accttgtcttagctgaaggaacaaaaagactcacatttatttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttc |
44371300 |
T |
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| Q |
214 |
catgacag |
221 |
Q |
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|||||||| |
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| T |
44371299 |
catgacag |
44371292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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